BP921671
Clone id YMU001_000152_G08
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGCTGCAGGCCAACAATGGCAGTCAAGTGTGTGCTAAGAATGCCATGTTCCATGCACGTA
CTAAACACATAGATGTTCGGTACCATGTCATACGACAGGTCTTGGGATGATGGTCTTGTC
ACACTGACTACGATCAAAACCCAAGATAATCCTGCAAATGTTCTCACCAAAAGTCTTGCA
AAGACTCAACATGAGCATTGCATACGATTAGTGGGAATTGGTTGGCTTAAAAATAGAAGT
CTTGGGTTACAAGCCCCTCAATCTTGCCAAATCGTTATGAGCGCGTCACTTTTGGAATAG
TCGCAACTAAACCAAAAGCCTAAAGGTAAAGCTTGACCGTGTATTTCTGGACCAGCTTAC
TCTTTACTTTCCTTTCCTTGCGTGGTAGAACCTGCTCAAGTATAAGAATCTACTCGGTTT
CTTTTGCCTATGGTTGATCCTTTGGTCCCTATCCTATTAGCACTTATCCCTTGAAAGGTC
GTGGTTGTGAAGTATGCATAATCCAAATAAATGG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 24
Score (bit) 43.1
E-value 9.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921671|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_G08.
(514 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 43 9e-08
sp|P87498|VIT1_CHICK Vitellogenin-1 OS=Gallus gallus GN=VTG1 PE=... 35 0.21
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 32 1.7
sp|A9NF61|RUVA_ACHLI Holliday junction ATP-dependent DNA helicas... 30 6.7
sp|P0ABN8|DCUA_SHIFL Anaerobic C4-dicarboxylate transporter dcuA... 30 8.7
sp|P0ABN5|DCUA_ECOLI Anaerobic C4-dicarboxylate transporter dcuA... 30 8.7
sp|P0ABN6|DCUA_ECOL6 Anaerobic C4-dicarboxylate transporter dcuA... 30 8.7
sp|P0ABN7|DCUA_ECO57 Anaerobic C4-dicarboxylate transporter dcuA... 30 8.7

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 43.1 bits (100), Expect(2) = 9e-08
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +3

Query: 33 AKNAMFHARTKHIDVRYHVIRQVL 104
+KN+M+HARTKHIDVRYH IR+++
Sbjct: 1264 SKNSMYHARTKHIDVRYHWIREMV 1287



Score = 33.1 bits (74), Expect(2) = 9e-08
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1

Query: 106 DDGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
DD + + I T +NPA++LTK + + + E C LVG+
Sbjct: 1288 DDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325


>sp|P87498|VIT1_CHICK Vitellogenin-1 OS=Gallus gallus GN=VTG1 PE=1
SV=1
Length = 1912

Score = 35.0 bits (79), Expect = 0.21
Identities = 27/92 (29%), Positives = 40/92 (43%)
Frame = +1

Query: 1 SCRPTMAVKCVLRMPCSMHVLNT*MFGTMSYDRSWDDGLVTLTTIKTQDNPANVLTKSLA 180
S + T A+ L +P N + M+ D DDGL I N+L SL
Sbjct: 92 SLKLTQALTGQLSIPIKFEYSNGHVGNLMAPDSVSDDGLNIYRGI------LNILELSLK 145

Query: 181 KTQHEHCIRLVGIGWLKNRSLGLQAPQSCQIV 276
K QH + I+ GIG + N + +Q + +V
Sbjct: 146 KMQHSYSIQEAGIGGICNTTYAIQENKKANLV 177


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
PE=1 SV=3
Length = 1409

Score = 32.0 bits (71), Expect = 1.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3

Query: 12 NNGSQVCAKNAMFHARTKHIDVRYHVIRQ 98
N G A N H R KHID++YH R+
Sbjct: 1332 NQGCISIANNPSCHKRAKHIDIKYHFARE 1360


>sp|A9NF61|RUVA_ACHLI Holliday junction ATP-dependent DNA helicase
ruvA OS=Acholeplasma laidlawii (strain PG-8A) GN=ruvA
PE=3 SV=1
Length = 186

Score = 30.0 bits (66), Expect = 6.7
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +2

Query: 128 LRSKPKIILQMFSPKVLQRLNMSIAYD*WELVGLKIEVLGYKPLNLAKSL*ARHFWNSRN 307
++S +IIL + V L+M + D + V +E LGY +AKSL +H ++
Sbjct: 115 MKSAQQIILDLKGKLVNDELDMQLLSDNSKDVAAALEALGYNKKEIAKSL--KHVNFDQD 172

Query: 308 *TKSLKVKL 334
K+LK L
Sbjct: 173 LNKALKEAL 181


>sp|P0ABN8|DCUA_SHIFL Anaerobic C4-dicarboxylate transporter dcuA
OS=Shigella flexneri GN=dcuA PE=3 SV=1
Length = 433

Score = 29.6 bits (65), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1

Query: 115 LVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGIGWL 228
+ TLTT+ + + N+L S K CI ++G+ WL
Sbjct: 269 VATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWL 306


>sp|P0ABN5|DCUA_ECOLI Anaerobic C4-dicarboxylate transporter dcuA
OS=Escherichia coli (strain K12) GN=dcuA PE=1 SV=1
Length = 433

Score = 29.6 bits (65), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1

Query: 115 LVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGIGWL 228
+ TLTT+ + + N+L S K CI ++G+ WL
Sbjct: 269 VATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWL 306


>sp|P0ABN6|DCUA_ECOL6 Anaerobic C4-dicarboxylate transporter dcuA
OS=Escherichia coli O6 GN=dcuA PE=3 SV=1
Length = 433

Score = 29.6 bits (65), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1

Query: 115 LVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGIGWL 228
+ TLTT+ + + N+L S K CI ++G+ WL
Sbjct: 269 VATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWL 306


>sp|P0ABN7|DCUA_ECO57 Anaerobic C4-dicarboxylate transporter dcuA
OS=Escherichia coli O157:H7 GN=dcuA PE=3 SV=1
Length = 433

Score = 29.6 bits (65), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1

Query: 115 LVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGIGWL 228
+ TLTT+ + + N+L S K CI ++G+ WL
Sbjct: 269 VATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWL 306


tr_hit_id A5AQ94
Definition tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 39
Score (bit) 43.5
E-value 4.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921671|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_G08.
(514 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis... 44 4e-08
tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol... 42 7e-08
tr|Q7G2K5|Q7G2K5_ORYSJ Retrotransposon protein, putative, Ty1-co... 43 2e-07
tr|Q8LNW7|Q8LNW7_ORYSJ Putative polyprotein OS=Oryza sativa subs... 43 2e-07
tr|Q2RAY7|Q2RAY7_ORYSJ Retrotransposon protein, putative, Ty1-co... 42 4e-07
tr|Q5JQU4|Q5JQU4_ORYSA OSJNBa0061C06.9 protein OS=Oryza sativa G... 42 4e-07
tr|Q6L4X8|Q6L4X8_ORYSJ Putative polyprotein OS=Oryza sativa subs... 41 7e-07
tr|Q7XTM9|Q7XTM9_ORYSJ OSJNBa0033G05.13 protein OS=Oryza sativa ... 41 7e-07
tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase ... 43 1e-06
tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarp... 40 1e-06
tr|A5BPC1|A5BPC1_VITVI Putative uncharacterized protein OS=Vitis... 39 2e-06
tr|A5BGA0|A5BGA0_VITVI Putative uncharacterized protein OS=Vitis... 39 2e-06
tr|Q53L15|Q53L15_ORYSJ Retrotransposon protein, putative, Ty1-co... 42 2e-06
tr|Q2QW17|Q2QW17_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 3e-06
tr|A5C944|A5C944_VITVI Putative uncharacterized protein OS=Vitis... 38 4e-06
tr|A5BUA9|A5BUA9_VITVI Putative uncharacterized protein OS=Vitis... 41 4e-06
tr|A5BCR7|A5BCR7_VITVI Putative uncharacterized protein OS=Vitis... 39 4e-06
tr|Q6AUC7|Q6AUC7_ORYSJ Putative polyprotein OS=Oryza sativa subs... 40 5e-06
tr|Q0J4E9|Q0J4E9_ORYSJ Os08g0518300 protein OS=Oryza sativa subs... 41 6e-06
tr|Q01N60|Q01N60_ORYSA OSIGBa0127D24.3 protein OS=Oryza sativa G... 43 6e-06
tr|B5DSH8|B5DSH8_DROPS GA27695 OS=Drosophila pseudoobscura pseud... 46 6e-06
tr|B5DSS0|B5DSS0_DROPS GA28119 OS=Drosophila pseudoobscura pseud... 46 7e-06
tr|Q0E1S6|Q0E1S6_ORYSJ Os02g0309000 protein OS=Oryza sativa subs... 41 1e-05
tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 1e-05
tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 1e-05
tr|Q7X670|Q7X670_ORYSJ OSJNBa0093P23.9 protein OS=Oryza sativa s... 39 1e-05
tr|Q01MJ3|Q01MJ3_ORYSA OSIGBa0105O19.1 protein OS=Oryza sativa G... 39 1e-05
tr|Q01MI4|Q01MI4_ORYSA H0515C11.7 protein OS=Oryza sativa GN=H05... 40 1e-05
tr|B5DSH7|B5DSH7_DROPS GA27696 OS=Drosophila pseudoobscura pseud... 46 1e-05
tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa G... 39 3e-05

>tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_017821 PE=4 SV=1
Length = 939

Score = 43.5 bits (101), Expect(2) = 4e-08
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +1

Query: 106 DDGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGIG 222
+ GLV ++ I T+DNPA++LTK ++K + + C+ L+ +G
Sbjct: 899 EQGLVNVSKISTKDNPADMLTKPISKVKFKQCLNLINVG 937



Score = 37.4 bits (85), Expect(2) = 4e-08
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQV 101
S +C KN FH RTKHIDVR+H IR +
Sbjct: 870 SALCLTKNQGFHERTKHIDVRFHFIRDI 897


>tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol
PE=4 SV=1
Length = 297

Score = 42.4 bits (98), Expect(2) = 7e-08
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3

Query: 12 NNGSQVCAKNAMFHARTKHIDVRYHVIRQVL 104
N + AKN +HARTKHIDV+YH +R+++
Sbjct: 225 NQSAIFLAKNQTYHARTKHIDVKYHYVREII 255



Score = 37.7 bits (86), Expect(2) = 7e-08
Identities = 15/38 (39%), Positives = 28/38 (73%)
Frame = +1

Query: 106 DDGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+ G V L I T+DNP+++LTK +++ + +HC++L+ I
Sbjct: 256 EGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLIQI 293


>tr|Q7G2K5|Q7G2K5_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g34120 PE=4 SV=1
Length = 1312

Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
S +C K+ MFH RTKHIDVRYH+IR V+
Sbjct: 1244 SAICLTKDQMFHERTKHIDVRYHIIRGVI 1272



Score = 36.2 bits (82), Expect(2) = 2e-07
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1

Query: 109 DGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+G V + I T DNPA+++TK ++ T+ E C LVG+
Sbjct: 1274 EGDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGV 1310


>tr|Q8LNW7|Q8LNW7_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNBa0012L23.31 PE=4 SV=1
Length = 1280

Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
S +C K+ MFH RTKHIDVRYH+IR V+
Sbjct: 1212 SAICLTKDQMFHERTKHIDVRYHIIRGVI 1240



Score = 36.2 bits (82), Expect(2) = 2e-07
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1

Query: 109 DGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+G V + I T DNPA+++TK ++ T+ E C LVG+
Sbjct: 1242 EGDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGV 1278


>tr|Q2RAY7|Q2RAY7_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g03830 PE=4 SV=1
Length = 1138

Score = 42.0 bits (97), Expect(2) = 4e-07
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
S +C K+ MFH RTKHIDVRYH IR V+
Sbjct: 1070 SAICLTKDQMFHERTKHIDVRYHFIRSVI 1098



Score = 35.4 bits (80), Expect(2) = 4e-07
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1

Query: 109 DGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+G V + I T DNPA+++TK + T+ E C LVG+
Sbjct: 1100 EGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1136


>tr|Q5JQU4|Q5JQU4_ORYSA OSJNBa0061C06.9 protein OS=Oryza sativa
GN=OSJNBa0061C06.9 PE=4 SV=1
Length = 1007

Score = 42.0 bits (97), Expect(2) = 4e-07
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
S +C KN MFH RTKHID+RYH IR V+
Sbjct: 939 SAICLTKNQMFHERTKHIDMRYHFIRGVI 967



Score = 35.4 bits (80), Expect(2) = 4e-07
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1

Query: 109 DGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+G V + I T DNPA+++TK + T+ E C LVG+
Sbjct: 969 EGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1005


>tr|Q6L4X8|Q6L4X8_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNBb0108E17.1 PE=4 SV=1
Length = 1211

Score = 41.2 bits (95), Expect(2) = 7e-07
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
S +C K+ MFH RTKHIDVRYH IR V+
Sbjct: 1143 SAICFTKDQMFHERTKHIDVRYHFIRGVI 1171



Score = 35.4 bits (80), Expect(2) = 7e-07
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1

Query: 109 DGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+G V + I T DNPA+++TK + T+ E C LVG+
Sbjct: 1173 EGDVKVCKISTHDNPADMMTKPVPTTKFELCSSLVGV 1209


>tr|Q7XTM9|Q7XTM9_ORYSJ OSJNBa0033G05.13 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0033G05.13 PE=4 SV=2
Length = 1181

Score = 41.2 bits (95), Expect(2) = 7e-07
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3

Query: 21 SQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
S +C K+ MFH RTKHIDVRYH IR V+
Sbjct: 1113 SAICLTKDQMFHERTKHIDVRYHFIRGVI 1141



Score = 35.4 bits (80), Expect(2) = 7e-07
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1

Query: 109 DGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
+G V + I T DNPA+++TK + T+ E C LVG+
Sbjct: 1143 EGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1179


>tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase
homolog (Fragment) OS=Arabidopsis thaliana PE=4 SV=1
Length = 112

Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +3

Query: 33 AKNAMFHARTKHIDVRYHVIRQVL 104
+KN+M+HARTKHIDVRYH IR+++
Sbjct: 48 SKNSMYHARTKHIDVRYHWIREMV 71



Score = 33.1 bits (74), Expect(2) = 1e-06
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1

Query: 106 DDGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRLVGI 219
DD + + I T +NPA++LTK + + + E C LVG+
Sbjct: 72 DDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 109


>tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarpa
PE=2 SV=1
Length = 353

Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 16/35 (45%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +3

Query: 3 LQANNGSQVC-AKNAMFHARTKHIDVRYHVIRQVL 104
+ ++ S +C AKN + H+RTKHIDVR+H +R+++
Sbjct: 29 VHCDSQSAICLAKNQVHHSRTKHIDVRFHFVREIV 63



Score = 35.4 bits (80), Expect(2) = 1e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1

Query: 106 DDGLVTLTTIKTQDNPANVLTKSLAKTQHEHCIRL 210
D+G + L I T DNPA++LTK ++ + +HC+ L
Sbjct: 64 DEGDILLQKIGTADNPADMLTKCVSGIKFQHCLDL 98