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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921678
Clone id YMU001_000152_H03
Library
Length 186
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCAATGGTGCAAGACCATATTATTCTCCATCCGAGAATATCGGATATGTTGTCCCTTAA
ATACAAGATAGTGCACAGCATATGCATACAACAAAAGAATGTGTTTCAAGAGCCAAAACT
CAAGTACTACAGCCCATTCGAGAGCAAAAGACTCAATATTACAAGTGGGAATTACTGTAT
GATCCT
■■Homology search results ■■ -
sp_hit_id Q6C8F7
Definition sp|Q6C8F7|EFR3_YARLI Protein EFR3 OS=Yarrowia lipolytica
Align length 28
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921678|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_H03.
         (186 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6C8F7|EFR3_YARLI Protein EFR3 OS=Yarrowia lipolytica GN=EFR3...    30   5.0  

>sp|Q6C8F7|EFR3_YARLI Protein EFR3 OS=Yarrowia lipolytica GN=EFR3
           PE=3 SV=1
          Length = 850

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 90  CMHMLCTILYLRDNISDILGWRIIWSCT 7
           CM  L T +Y  D ISD++G  ++W CT
Sbjct: 388 CMISLGTHIYYADQISDMVG-EVLWRCT 414
tr_hit_id B8BN56
Definition tr|B8BN56|B8BN56_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 44
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921678|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_H03.
         (186 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BN56|B8BN56_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.4  

>tr|B8BN56|B8BN56_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39228 PE=4 SV=1
          Length = 743

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 38  ISDMLSLKYKIVHSICIQQKNVFQEPKLKYYSPFESKRLNITSG 169
           + + +S K   +  +C++ K   QE KLK   P  SK+ +I +G
Sbjct: 371 LDNKISTKLISIEGVCLENKRDIQEMKLKICKPSRSKKTDIAAG 414