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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921680
Clone id YMU001_000152_H06
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACCAGTGAAAGCAAAACTTATCGGAACTCCTTGCACAACTTCATTTCACCCTAAGAGG
GGAGCAGGAGGCTCCTGATAATGAAGTGATACCTGAAGGGGACACATGATGAGGATACAA
TAGTCATGATCAGAAGGTCCCCCACGATATCTGGTGAAGACAAAATGATACACTACGACA
CACAAGAGAAACCACCATAATGTCTGCATCTAAAAACAGGCTTGAAATTTCCTCATTGAG
CAGTGGGATCACTTCCATGCATGAGTTCATGCAGCTACCTCTTACCAGCTGCTCTCATCA
CCTTCTTCTGGCCAGTCCTTTGGCTACCCTTTTGAGCCCCTGGCTTTGTACGAACTCCAC
CTTTAGAAACTCGTACTACGGGTGTCTTCTTTGTCTTAGAAAACACTACAGTGGTCCCTC
TGGAGGATGGCTTGCTACTTTGAGAAGCTGAAGGCTTCTTCATAGGTGACTTCTTCACAG
GTTTGAACCGCTGAGACATTGCCGGTCTACCCACTTTTCCTTTTTC
■■Homology search results ■■ -
sp_hit_id Q3JAF0
Definition sp|Q3JAF0|OSTA_NITOC LPS-assembly protein OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 28
Score (bit) 29.6
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921680|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_H06.
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3JAF0|OSTA_NITOC LPS-assembly protein OS=Nitrosococcus ocean...    30   9.1  

>sp|Q3JAF0|OSTA_NITOC LPS-assembly protein OS=Nitrosococcus oceani
           (strain ATCC 19707 / NCIMB 11848) GN=imp PE=3 SV=1
          Length = 738

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 306 FWPVLWLPF*APGFVRTPPLETRTTGVF 389
           FWP + LPF  PG   TP +  R T  F
Sbjct: 420 FWPTVSLPFRTPGTFFTPSIGVRDTRYF 447
tr_hit_id Q89T89
Definition tr|Q89T89|Q89T89_BRAJA Blr2157 protein OS=Bradyrhizobium japonicum
Align length 31
Score (bit) 34.7
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921680|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_H06.
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q89T89|Q89T89_BRAJA Blr2157 protein OS=Bradyrhizobium japonic...    35   3.0  

>tr|Q89T89|Q89T89_BRAJA Blr2157 protein OS=Bradyrhizobium japonicum
           GN=blr2157 PE=4 SV=1
          Length = 405

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 243 VGSLPCMSSCSYLLPAALI-TFFWPVLWLPF 332
           +G  P +   +Y LP  ++ TFFWP LW P+
Sbjct: 271 IGRQPLLPGAAYYLPLIMLATFFWPFLWKPY 301