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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921684
Clone id YMU001_000152_H10
Library
Length 437
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTCTTCACCTTCACCATCAATATCTCCATCATCATCATCCTCTTCATCGGACCCATCAC
TCTGTGATTGACCACTGCTCCCACCATCTCCATCTTCCAATTCTCTATATTCTGCTTCAC
TTCTCATTTCGACAGGTTGCTCACTTCCTGCCCAGTCCAAGACTCTTGGAGATGTGTTTA
TGGCATTAGAAATGTAAGAACTTCCATTAGCAAACCTCTGGCCTTCATCAACCAAGCCCT
CACTTTTATTAGTGGAGGTTAGCACTTGACTGTTGCCACTATTGAACTCTCTTACTGAGC
CTGCTAAAAAGTGATCCCTATCCAAAGTTCCATATCCCTGTCCATCAACACTGCCTACAG
TTTCTGGCCTGAAACTCCTTACTGGATCACCTCTTGATGGAACCCCTGGCGGGCCACCAT
GATACAAACGAGAAAAG
■■Homology search results ■■ -
sp_hit_id Q8CGW9
Definition sp|Q8CGW9|DMRTD_MOUSE Doublesex- and mab-3-related transcription factor C2 OS=Mus musculus
Align length 28
Score (bit) 30.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921684|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_H10.
         (437 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CGW9|DMRTD_MOUSE Doublesex- and mab-3-related transcription...    30   3.4  
sp|P58934|BCSB_PSEFL Cyclic di-GMP-binding protein OS=Pseudomona...    30   5.7  
sp|Q68XW1|Y044_RICTY Uncharacterized protein RT0044 OS=Rickettsi...    29   9.8  
sp|Q12256|TPO4_YEAST Polyamine transporter 4 OS=Saccharomyces ce...    29   9.8  

>sp|Q8CGW9|DMRTD_MOUSE Doublesex- and mab-3-related transcription
           factor C2 OS=Mus musculus GN=Dmrtc2 PE=2 SV=1
          Length = 370

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 PCPSTLPTVSGLKLLTGSPLDGTPGGPP 419
           P   TLPT  G + +  +PL G P GPP
Sbjct: 223 PTHGTLPTCPGSRSVLTAPLSGEPQGPP 250


>sp|P58934|BCSB_PSEFL Cyclic di-GMP-binding protein OS=Pseudomonas
           fluorescens GN=bcsB PE=3 SV=1
          Length = 689

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 388 DPVRSFRPETVGSVDGQGYGTLDRDHFLAGSVREFNSGNSQVLTSTNKSEGLVDEGQRFA 209
           DP  +  P   G      +  L    +LAG      SG S VL ++N+ +GL++      
Sbjct: 554 DPAANQHPANTGIT----FKGLSNSTWLAGFQSPLKSGRSVVLIASNQPQGLLEATNALI 609

Query: 208 NGSSY 194
            G  Y
Sbjct: 610 GGDDY 614


>sp|Q68XW1|Y044_RICTY Uncharacterized protein RT0044 OS=Rickettsia
           typhi GN=RT0044 PE=3 SV=1
          Length = 251

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 313 DPYPKFHIPVHQHCLQFLA*NSLLDHLLMEPLA 411
           DPY KF+  V        A NS+LDH+++ PLA
Sbjct: 44  DPYEKFNRKV-------FAFNSVLDHIILRPLA 69


>sp|Q12256|TPO4_YEAST Polyamine transporter 4 OS=Saccharomyces
           cerevisiae GN=TPO4 PE=1 SV=1
          Length = 659

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 283 NSGNSQVLTSTNKSEGLVDEGQRFANGSSYISNAIN---TSPRVLDWAGSEQP 134
           NSGN   L ST+ S G + E ++ +  ++  +N        PR LDW G + P
Sbjct: 31  NSGN---LDSTSSSTGSITEDEKRSEPNADSNNMTGGEPIDPRDLDWDGPDDP 80
tr_hit_id B3L977
Definition tr|B3L977|B3L977_PLAKH Putative uncharacterized protein OS=Plasmodium knowlesi (strain H)
Align length 83
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921684|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_H10.
         (437 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3L977|B3L977_PLAKH Putative uncharacterized protein OS=Plasm...    37   0.38 
tr|A5WCB6|A5WCB6_PSYWF RNA polymerase, sigma 54 subunit, RpoN OS...    36   0.84 
tr|A8NCJ5|A8NCJ5_COPC7 Putative uncharacterized protein OS=Copri...    36   0.84 
tr|A4EL25|A4EL25_9RHOB Putative uncharacterized protein OS=Roseo...    35   1.9  
tr|O85671|O85671_ENTAG Host specific virulence protein HsvG OS=P...    35   2.4  
tr|B2IVV7|B2IVV7_NOSP7 ABC transporter related OS=Nostoc punctif...    33   7.1  
tr|Q4P6Z8|Q4P6Z8_USTMA Putative uncharacterized protein OS=Ustil...    33   7.1  
tr|B8NCR5|B8NCR5_ASPFL LysM domain protein, putative OS=Aspergil...    33   9.2  

>tr|B3L977|B3L977_PLAKH Putative uncharacterized protein OS=Plasmodium
            knowlesi (strain H) GN=PKH_123730 PE=4 SV=1
          Length = 3010

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 26/83 (31%), Positives = 38/83 (45%)
 Frame = -2

Query: 418  GGPPGVPSRGDPVRSFRPETVGSVDGQGYGTLDRDHFLAGSVREFNSGNSQVLTSTNKSE 239
            GG  GVP+ G   R+F   T  S++G  Y  +D  H        FN+GN+Q   ST    
Sbjct: 1107 GGAGGVPTSGGACRNFIYNTSSSIEGPFYNNVDIMH-----ADSFNNGNAQAGGSTAIGV 1161

Query: 238  GLVDEGQRFANGSSYISNAINTS 170
            G     ++F   +   S +I+ S
Sbjct: 1162 GSDGINKQFYQNNLGTSQSIDKS 1184


>tr|A5WCB6|A5WCB6_PSYWF RNA polymerase, sigma 54 subunit, RpoN
           OS=Psychrobacter sp. (strain PRwf-1) GN=PsycPRwf_0352
           PE=4 SV=1
          Length = 581

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = -2

Query: 364 ETVGSVDGQGYGTLDRDHFLAGSVREFNSGNSQVLTSTNKSEGLVDEGQRFANGSSYISN 185
           +    +DG G G L       G + + N  N   L  TNK+EG +++ Q   + ++   N
Sbjct: 101 DVFSELDGDGLGNL-------GDLNDLNDLNENALDDTNKTEGDIEQNQALISITTTADN 153

Query: 184 AINTSPRVLDWAGSEQPVE 128
            +      LD +  E P++
Sbjct: 154 DLKAEASNLDTSLGELPID 172


>tr|A8NCJ5|A8NCJ5_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_03553 PE=4 SV=1
          Length = 871

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
 Frame = -2

Query: 433 SRLYHGGPPGVPSRGDPVRSFR------PETVGSVDGQGYGTLDRDHFLAGSVREFNSGN 272
           SRL H  PP VP++G   R+         E VGS + +G G    +      VRE+ S  
Sbjct: 105 SRLPHPLPPRVPTKGRIERAHMERAARGTEEVGS-EEEGKGRAVEEPRPMKRVREYKSAA 163

Query: 271 SQVLTSTNKSEGL-------VDEGQRFANGSSYISNAINTSPRVLDWA 149
            ++     K  GL       V EG R  + + ++    N  PR+ D A
Sbjct: 164 ERMTKEERKKAGLKRITAYCVAEGLRMKSLAGFLKREHNVQPRIFDEA 211


>tr|A4EL25|A4EL25_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. CCS2 GN=RCCS2_01508 PE=4 SV=1
          Length = 301

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +1

Query: 286 TLLLSLLKSDPYPKFHIPVHQHCLQFLA*NSLLDHLLMEPL 408
           T+ + +L    +PK  +PVH HCL     N L++++L+EPL
Sbjct: 231 TMAVEVLPGADFPKIQMPVHLHCLVDAGVN-LIENMLLEPL 270


>tr|O85671|O85671_ENTAG Host specific virulence protein HsvG
           OS=Pantoea agglomerans pv. betae GN=hsvG PE=4 SV=1
          Length = 671

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
 Frame = -2

Query: 415 GPPGVP--SRGDPVRSFRPETVGSVDG-----------QGYGTLDRDH--------FLAG 299
           GP G P  S  D V  FRP+ VG   G           QGY  + R H        +L G
Sbjct: 525 GPDGAPFVSMRDAVPPFRPDGVGFASGEGLSCLLDSILQGYHNIRRGHGAPRGLTDWLDG 584

Query: 298 SVREFNSGNSQVLTSTNKSEGLVDEGQRFANGSSYISNAINTSPRVLDWAGSEQP 134
            VR      S        + G +D    +    SY++ A+N   +V+     E+P
Sbjct: 585 EVRRVREALSAQGVDLVPARGEID---IYGGAGSYLAGAMNVRLQVIQAEFQEEP 636


>tr|B2IVV7|B2IVV7_NOSP7 ABC transporter related OS=Nostoc
           punctiforme (strain ATCC 29133 / PCC 73102)
           GN=Npun_F6130 PE=4 SV=1
          Length = 722

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 301 GSVREFNSGNSQVLTSTNKSEGLVDEGQRFANGSSYISNAINTSPRVLDWAGSEQP-VEM 125
           G +  FN+    VL   N   GLVDE  R     S +   I+ +P V+   GS++P V++
Sbjct: 425 GQMLAFNALQFNVLALINSLVGLVDEYFRSQTAISRLLEVIDATPEVV--GGSQKPVVQI 482

Query: 124 RSEAEYR 104
            S+A+ R
Sbjct: 483 SSDADIR 489


>tr|Q4P6Z8|Q4P6Z8_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM04115.1 PE=3 SV=1
          Length = 447

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -2

Query: 367 PETVGSVDGQGYGTLDRDHFLAGSVREFNSGNSQVLTSTNK---SEGLVDEGQRFAN 206
           P T GSV   G   + RD+  AGSV+ FNS  S  L++ +     E  + EG++FAN
Sbjct: 29  PNTNGSVANGG--VVARDNGNAGSVQPFNSRYSDFLSNVSNFKIIESTLREGEQFAN 83


>tr|B8NCR5|B8NCR5_ASPFL LysM domain protein, putative OS=Aspergillus
           flavus NRRL3357 GN=AFLA_041500 PE=4 SV=1
          Length = 632

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
 Frame = -2

Query: 382 VRSFRPETVGSVDGQGYGTLDRDHFLAGSVREFNSGNSQVLTSTNKSEGLVDEGQRFANG 203
           VR  R  +   + G G GTLDRD    G   +   G S+       +        +F + 
Sbjct: 455 VRHQRQRSNIQLAGPGVGTLDRDTMAPGPALD---GLSKFFAQHLPNLAPTPTPPKFQDS 511

Query: 202 SSYISNAINTSPRVLDWAGSE-----QPVEMRSEAEYREL 98
           + Y SNA++ +P  LD  G       + +  R++A + EL
Sbjct: 512 TEYTSNAVSNTPTGLDNIGGAVEGWVRKMTSRAKAGFNEL 551