| BP921689 |
| Clone id |
YMU001_000153_A04 |
| Library |
YMU01 |
| Length |
555 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000153_A04. |
| Accession |
BP921689 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
AACTGGAAGAATTCGCGGCCGCGAATGGTAGGTGAGGGCACAAATATCTGGAACCAATCC
CACTGTTGTTTTTGCCTGCTAAGTTCTTGGCGGAAGGTTCTCTGGGACTTGTTTATCTGC
TTTATGAGGACAAGTGTAAGTTGTATGGCCTATCTGAAAACATTCAAAACACCTCCTTCT
TGTTGAAGAGTGTCTTGTTGCCTTTGGATGAGTCACGGTTGTAGAGATGGACTTGAGGTA
TCGCTAGGAGTGGGTTGTTGTTGTCGAGCAGTATTCTTAGCCACATGTTCTTGGACGGTG
TCAAGTGCAAATACCCTTGATTTATCAACAACACGGAGACTTATGGCGAGAGAAACATTC
AGATAATGAGAAATGGAGATGTAGTGTTTGATAAAACCACTCAACGCAGGTAGGCGCGCA
CCTGTGATGGACCAAAGAGTGCATGTGCAAAGCTCTACACAGATCAAAAGCTCATAGAGA
TAAGTTCTTTGCAATATCTTGCTTTTGTTAGACACAAATCGATTGCACAATAGGCGCCCC
TTTAAGCAATCCAAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q87MQ8 |
| Definition |
sp|Q87MQ8|Y2173_VIBPA UPF0597 protein VP2173 OS=Vibrio parahaemolyticus |
| Align length |
36 |
| Score (bit) |
33.5 |
| E-value |
0.65 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q5BT10 |
| Definition |
tr|Q5BT10|Q5BT10_SCHJA SJCHGC03014 protein (Fragment) OS=Schistosoma japonicum |
| Align length |
24 |
| Score (bit) |
38.9 |
| E-value |
0.16 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921689|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_A04.
(529 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q5BT10|Q5BT10_SCHJA SJCHGC03014 protein (Fragment) OS=Schisto... 39 0.16
tr|B6NCZ9|B6NCZ9_BRAFL Putative uncharacterized protein (Fragmen... 39 0.21
tr|Q5C1A2|Q5C1A2_SCHJA SJCHGC04723 protein (Fragment) OS=Schisto... 38 0.37
tr|Q382X0|Q382X0_9TRYP RNA helicase, putative OS=Trypanosoma bru... 37 0.62
tr|Q8UUM8|Q8UUM8_ORYLA LReO_3 protein OS=Oryzias latipes GN=LReO... 36 1.1
tr|Q8S708|Q8S708_ORYSJ Putative uncharacterized protein OSJNBa00... 35 2.4
tr|Q8RU68|Q8RU68_ORYSA Putative 22 kDa kafirin cluster; Ty3-Gyps... 34 4.0
tr|Q7G6A5|Q7G6A5_ORYSJ Putative 22 kDa kafirin cluster; Ty3-Gyps... 34 4.0
tr|Q2QPF0|Q2QPF0_ORYSJ Retrotransposon protein, putative, Ty1-co... 34 5.3
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1 33 6.9
tr|A7Q5W4|A7Q5W4_VITVI Chromosome chr14 scaffold_54, whole genom... 33 6.9
tr|B8MTZ0|B8MTZ0_9EURO Zinc knuckle nucleic acid binding protein... 33 6.9
tr|Q6PF71|Q6PF71_XENLA Putative uncharacterized protein (Fragmen... 33 9.0
tr|Q9FU94|Q9FU94_ORYSJ cDNA clone:002-108-A04, full insert seque... 33 9.0
tr|Q6UU68|Q6UU68_ORYSJ Putative DNA-binding protein OS=Oryza sat... 33 9.0
tr|Q0Q5D1|Q0Q5D1_WHEAT Protein kinase OS=Triticum aestivum PE=4 ... 33 9.0
tr|Q177B2|Q177B2_AEDAE Putative uncharacterized protein OS=Aedes... 33 9.0
tr|B0X239|B0X239_CULQU Zinc finger CCHC-type and RNA-binding mot... 33 9.0
>tr|Q5BT10|Q5BT10_SCHJA SJCHGC03014 protein (Fragment)
OS=Schistosoma japonicum PE=2 SV=2
Length = 80
Score = 38.9 bits (89), Expect = 0.16
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 163 SSTRRRCFECFQIGHTTYTCPHKA 92
S+ RCFEC +GHT + CPHKA
Sbjct: 56 STDSLRCFECGDLGHTNFACPHKA 79
>tr|B6NCZ9|B6NCZ9_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_226947 PE=4 SV=1
Length = 142
Score = 38.5 bits (88), Expect = 0.21
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +2
Query: 23 WNQSHCCFCLLSSWRKVLWDLFICFMRTSV--SCMAYLKTFKTPPSC*RVSCCLWMSHGC 196
W C C SWR + C++R SC + +K SC + C W S+G
Sbjct: 23 WKSCGICICCWKSWRIRTCCCYSCWIRICCWKSCGIRICCWK---SC-GIRICCWKSYGI 78
Query: 197 RDGLEVSLGVG-CCCRAVFLATCSW 268
R S G+ CCC + + C W
Sbjct: 79 RICCWKSCGIRICCCYSCRIRICCW 103
>tr|Q5C1A2|Q5C1A2_SCHJA SJCHGC04723 protein (Fragment)
OS=Schistosoma japonicum PE=2 SV=2
Length = 193
Score = 37.7 bits (86), Expect = 0.37
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 163 SSTRRRCFECFQIGHTTYTCPHKADKQ 83
S+ RCFEC +GH ++ CPHK +Q
Sbjct: 127 STDSLRCFECGDLGHKSFACPHKGHRQ 153
>tr|Q382X0|Q382X0_9TRYP RNA helicase, putative OS=Trypanosoma brucei
GN=Tb11.01.3930 PE=4 SV=1
Length = 1299
Score = 37.0 bits (84), Expect = 0.62
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 211 LKSISTTVTHPKATRHSSTRRRCFECFQIGHTTYTCPHKA 92
L + ++ PK S+ +R CF C + GH TCPHKA
Sbjct: 1230 LLQVESSDDAPKKKDGSADKRTCFVCGEGGHVVNTCPHKA 1269
>tr|Q8UUM8|Q8UUM8_ORYLA LReO_3 protein OS=Oryzias latipes GN=LReO_3
PE=4 SV=1
Length = 1498
Score = 36.2 bits (82), Expect = 1.1
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -1
Query: 148 RCFECFQIGHTTYTCPHKADKQVPENL 68
RC++C +IGHT YTCP A +Q P +L
Sbjct: 353 RCYQCNEIGHTQYTCP--ATRQNPPSL 377
>tr|Q8S708|Q8S708_ORYSJ Putative uncharacterized protein
OSJNBa0034L04.18 (Retrotransposon protein, putative,
unclassified) (Putative zinc knuckle domain containing
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBa0034L04.18 PE=4 SV=1
Length = 429
Score = 35.0 bits (79), Expect = 2.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 181 PKATRHSSTRRRCFECFQIGHTTYTCPHKADKQVPENLPPRT*QAKTTV 35
P R CF C ++GH ++ CP KA + P+ + + Q T++
Sbjct: 319 PSKRRGHKAGVECFTCHEMGHYSWDCPQKAKMKCPQKVKSKQVQQTTSL 367
>tr|Q8RU68|Q8RU68_ORYSA Putative 22 kDa kafirin cluster; Ty3-Gypsy
type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Length = 1230
Score = 34.3 bits (77), Expect = 4.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -1
Query: 148 RCFECFQIGHTTYTCP--HKADKQVPENLPPRT 56
RCFEC + GHT Y CP K +V P T
Sbjct: 302 RCFECGEAGHTRYQCPLLQKGKNRVSSTTQPNT 334
>tr|Q7G6A5|Q7G6A5_ORYSJ Putative 22 kDa kafirin cluster; Ty3-Gypsy
type (Retrotransposon protein, putative, Ty3-gypsy
subclass) OS=Oryza sativa subsp. japonica
GN=OSJNAb0075K12.33 PE=4 SV=1
Length = 1230
Score = 34.3 bits (77), Expect = 4.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -1
Query: 148 RCFECFQIGHTTYTCP--HKADKQVPENLPPRT 56
RCFEC + GHT Y CP K +V P T
Sbjct: 302 RCFECGEAGHTRYQCPLLQKGKNRVSSTTQPNT 334
>tr|Q2QPF0|Q2QPF0_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g34700 PE=4 SV=2
Length = 1243
Score = 33.9 bits (76), Expect = 5.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 151 RRCFECFQIGHTTYTCPHKADKQVPENLPPRT*QAKTTVGLVPD 20
R CF C Q+GH CPH+ + P ++ A T+G D
Sbjct: 240 RTCFVCGQVGHLARKCPHRKGMKAPAGQTSKS--ANVTIGNTGD 281
>tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
Length = 1484
Score = 33.5 bits (75), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 163 SSTRRRCFECFQIGHTTYTCPHKADKQ 83
S+T RCF C + GH +Y CP K + Q
Sbjct: 331 SNTPTRCFRCGKEGHMSYDCPEKFNPQ 357
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