BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921693|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_A08.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47066|YJC2_YEAST Putative uncharacterized protein YJL009W OS...    32   1.9  
sp|O94669|AP3M_SCHPO AP-3 complex subunit mu OS=Schizosaccharomy...    31   4.3  
sp|Q2JU21|RL33_SYNJA 50S ribosomal protein L33 OS=Synechococcus ...    31   4.3  
sp|Q283Q6|DBF4B_XENLA Protein DBF4 homolog B OS=Xenopus laevis G...    31   4.3  
sp|O63852|MSHM_SARGL Mitochondrial DNA mismatch repair protein m...    30   5.6  
sp|Q2JL27|RL33_SYNJB 50S ribosomal protein L33 OS=Synechococcus ...    30   5.7  
sp|Q36724|COX1_BLAGE Cytochrome c oxidase subunit 1 (Fragment) O...    30   7.3  
sp|A1W0U9|HIS51_CAMJJ Imidazole glycerol phosphate synthase subu...    30   9.5  

>sp|P47066|YJC2_YEAST Putative uncharacterized protein YJL009W
           OS=Saccharomyces cerevisiae GN=YJL022W PE=5 SV=1
          Length = 102

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 273 LVFTQFQCTNKLPNSCFRRYKLVPSSIFFIVLHYKK 166
           +VF+ F+ T + P S FRR      S+FF+ ++++K
Sbjct: 33  IVFSAFKHTAEFPESLFRRSPRERGSVFFVTINFEK 68


>sp|O94669|AP3M_SCHPO AP-3 complex subunit mu OS=Schizosaccharomyces
           pombe GN=apm3 PE=2 SV=1
          Length = 425

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 311 DVAP*LTSFFLTNWYLHNSNVQTNFPTLASDAISWFQVRSSS*FYITRSFII 156
           D+ P L SF   N ++  + +QTN PTLA D + W   R++   Y T  F I
Sbjct: 135 DIVP-LPSFM--NKFMAVTGLQTNTPTLARDTVPW---RTAKAKYATNEFFI 180


>sp|Q2JU21|RL33_SYNJA 50S ribosomal protein L33 OS=Synechococcus sp.
           (strain JA-3-3Ab) GN=rpmG PE=3 SV=1
          Length = 64

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 529 SFEFNGCNQNISSEKTRMNMYTTTKIRTQTTPVSRFSQVKPMPSNHAV 386
           + E   C  N++     +N YTTTK R  TT      +  P  + H V
Sbjct: 12  TLECTECRTNVNKRSPGVNRYTTTKNRRNTTARLELKKFCPKCNRHTV 59


>sp|Q283Q6|DBF4B_XENLA Protein DBF4 homolog B OS=Xenopus laevis
           GN=dbf4b PE=1 SV=1
          Length = 784

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 293 SIKELHLMPDSTDVICPHCGITKLARGGQHNDSMI*RHW 409
           S  + H  P  +D +   C I  L  GG+H D+ +  HW
Sbjct: 520 STGDRHAQPAGSDALAMSCVIPTLDNGGRHVDATMQSHW 558


>sp|O63852|MSHM_SARGL Mitochondrial DNA mismatch repair protein mutS
            homolog OS=Sarcophyton glaucum PE=3 SV=1
          Length = 982

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 108  ICKAISKLLQKVYPTFDDKASCNVKL*RRSNLEPAYS 218
            IC A +  +  + P  + K  CN KL RRSNL P  S
Sbjct: 907  ICGAPADAVHHIKPKSEHKKLCNRKLNRRSNLVPVCS 943


>sp|Q2JL27|RL33_SYNJB 50S ribosomal protein L33 OS=Synechococcus sp.
           GN=rpmG PE=3 SV=1
          Length = 64

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 529 SFEFNGCNQNISSEKTRMNMYTTTKIRTQTTPVSRFSQVKPMPSNHAV 386
           + E   C  N++     +N YTTTK R  TT      +  P  + H V
Sbjct: 12  TLECTECRTNVNKRSPGVNRYTTTKNRRNTTARLELKKFCPHCNRHTV 59


>sp|Q36724|COX1_BLAGE Cytochrome c oxidase subunit 1 (Fragment)
           OS=Blattella germanica GN=COI PE=2 SV=1
          Length = 508

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 287 FFLTNWYLHNSNVQTNFPTLASDAISWFQ 201
           F    W   +SN Q  FPT  S++I WFQ
Sbjct: 463 FIFIMWESMSSNRQVLFPTQTSNSIEWFQ 491


>sp|A1W0U9|HIS51_CAMJJ Imidazole glycerol phosphate synthase subunit
           hisH 1 OS=Campylobacter jejuni subsp. jejuni serotype
           O:23/36 (strain 81-176) GN=hisH1 PE=3 SV=1
          Length = 201

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = -3

Query: 200 VRSSS*FYITRSFIIKCRINFLK---QFGDRFTNSL------PLNFHPK 81
           + + S FY   SF +KC+  F+    Q+G +F  SL         FHP+
Sbjct: 137 INNKSDFYFVHSFYVKCKDEFVSAKAQYGHKFVASLQKDRIFATQFHPE 185

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921693|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_A08.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0MLD6|B0MLD6_9FIRM Putative uncharacterized protein OS=Eubac...    34   5.5  
tr|A0CJ71|A0CJ71_PARTE Chromosome undetermined scaffold_194, who...    33   9.2  

>tr|B0MLD6|B0MLD6_9FIRM Putative uncharacterized protein
           OS=Eubacterium siraeum DSM 15702 GN=EUBSIR_00625 PE=4
           SV=1
          Length = 192

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = -2

Query: 453 FVPKPLPSQDSHKLNQCLQIMLSLC*PPLASLVMPQC---GQITSVESGMRCSSLIDFIL 283
           F+PK L + D   L+     +L LC  PL  LV+ QC   G I  +++G     +I    
Sbjct: 65  FIPKTL-ADDGDPLD-----VLVLCNEPLVPLVLVQCYPIGVINMIDNGKMDQKIIAI-- 116

Query: 282 SY*LVFTQFQCTNKLPNSCFRRYKLVPSSIFFIVLHYKKLYHQM 151
                   F+  N    + +R  + +PS IF  +LH+ K+Y Q+
Sbjct: 117 -------PFEDPNY---NSYRSIEGLPSHIFDEMLHFFKVYKQL 150


>tr|A0CJ71|A0CJ71_PARTE Chromosome undetermined scaffold_194, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00038620001 PE=4 SV=1
          Length = 699

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -3

Query: 281 LTNWYLHNSNVQTNFPTLASDAISWFQVRSSS*F--YITRSFIIKCRINFLKQFGDRFTN 108
           +T++  +N N++    T A  +ISWF +R  S F  YI   +  +C+   ++ F   F+N
Sbjct: 311 ITDFIHNNENLRIEVTTSADGSISWFGIRDFSLFIDYIKEEY--QCKDFNIQPFDGCFSN 368

Query: 107 SLPLNF 90
               NF
Sbjct: 369 QYDCNF 374