NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921696
Clone id YMU001_000153_A11
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCCCACATCATAGGCCACTTCTTATTAGGTGCCCTCTTCCTCTCCATCTCCCCGCCATA
GCCTGCCCTTCGTCCTTCCGCCGAAGCCTGCACTTTGGAGGTGTTTGCAGAGAGTGAGCA
TCTCGCATTTCTGGCCTTCGCAACAATTCTTCACCAGAATTTCCTCTCTGTCGGGTTTTC
CTTCTTCGTGCCAGCCACTTGCTCTTTGCTCTTTGCTTCAGACAGCTCTTTTCTCCCTGG
AGGATGAGTACCTGTCGCGAAATCAACTTATGGTTTCTCTATTCAGATATTCTTTGACAC
ATTAGAACTTGGTATTACAAGGACGCCCAGTCTCTTTTCCCATGCTGCAGAAGTAGATTC
ATAAGCAGTTTTTCCTCTCAGCTTGTTTTGCAAAGCTATATGGGAGGCCAAGGATTCAGT
TTCCTGCTGATGCACGGAATGGAAGTTTCTGCATCACCTTGCTCATCCACCTTCATTCCT
TTGAAGGGATTCCCTGTTACTCTGAAAATTGTGCCTGTGGCCTCGTACGCCCTCTTTAGA
GGTGCTACGTTCTCC
■■Homology search results ■■ -
sp_hit_id A0EQL2
Definition sp|A0EQL2|SHBG_CROCR Sex hormone-binding globulin OS=Crocuta crocuta
Align length 61
Score (bit) 32.3
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921696|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_A11.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0EQL2|SHBG_CROCR Sex hormone-binding globulin OS=Crocuta cro...    32   1.6  
sp|Q7MM14|SYM_VIBVY Methionyl-tRNA synthetase OS=Vibrio vulnific...    32   2.1  
sp|Q8D8F2|SYM_VIBVU Methionyl-tRNA synthetase OS=Vibrio vulnific...    32   2.1  
sp|Q9KT69|SYM_VIBCH Methionyl-tRNA synthetase OS=Vibrio cholerae...    32   2.1  
sp|A5F2P8|SYM_VIBC3 Methionyl-tRNA synthetase OS=Vibrio cholerae...    32   2.1  
sp|Q87N07|SYM_VIBPA Methionyl-tRNA synthetase OS=Vibrio parahaem...    32   2.7  
sp|A7MZT3|SYM_VIBHB Methionyl-tRNA synthetase OS=Vibrio harveyi ...    32   2.7  
sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus...    31   4.7  
sp|Q5E3Z7|SYM_VIBF1 Methionyl-tRNA synthetase OS=Vibrio fischeri...    31   4.7  
sp|Q9R1M5|NALP5_MOUSE NACHT, LRR and PYD domains-containing prot...    30   6.0  
sp|P44763|MNMG_HAEIN tRNA uridine 5-carboxymethylaminomethyl mod...    30   6.0  
sp|A5UHB8|MNMG_HAEIG tRNA uridine 5-carboxymethylaminomethyl mod...    30   6.0  
sp|P25364|HCM1_YEAST Forkhead transcription factor HCM1 OS=Sacch...    30   6.0  
sp|Q06666|T2_MOUSE Octapeptide-repeat protein T2 OS=Mus musculus...    30   7.9  
sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudo...    30   7.9  

>sp|A0EQL2|SHBG_CROCR Sex hormone-binding globulin OS=Crocuta
           crocuta GN=SHBG PE=2 SV=1
          Length = 393

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 75  LPPKPALWRCLQRVSISHFWPSQQFFTRISSLSGFPSSC----QPLALCSLLQTALFSLE 242
           LP  PAL  C++R S    W   Q  T +S+LSG P SC    QP +       A FSL+
Sbjct: 174 LPLVPALDGCVRRGS----WLDHQAQTSVSALSGSPRSCGVESQPGSFFPPGAHAEFSLQ 229

Query: 243 D 245
           D
Sbjct: 230 D 230


>sp|Q7MM14|SYM_VIBVY Methionyl-tRNA synthetase OS=Vibrio vulnificus
           (strain YJ016) GN=metG PE=3 SV=1
          Length = 690

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H  E   LASHI LQ K  G
Sbjct: 99  NYHSTHSDENRELASHIYLQLKKNG 123


>sp|Q8D8F2|SYM_VIBVU Methionyl-tRNA synthetase OS=Vibrio vulnificus
           GN=metG PE=3 SV=2
          Length = 690

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H  E   LASHI LQ K  G
Sbjct: 99  NYHSTHSDENRELASHIYLQLKKNG 123


>sp|Q9KT69|SYM_VIBCH Methionyl-tRNA synthetase OS=Vibrio cholerae
           GN=metG PE=3 SV=2
          Length = 683

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H  E   LASHI LQ K  G
Sbjct: 94  NYHSTHSDENRELASHIYLQLKKNG 118


>sp|A5F2P8|SYM_VIBC3 Methionyl-tRNA synthetase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=metG PE=3 SV=2
          Length = 683

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H  E   LASHI LQ K  G
Sbjct: 94  NYHSTHSDENRELASHIYLQLKKNG 118


>sp|Q87N07|SYM_VIBPA Methionyl-tRNA synthetase OS=Vibrio
           parahaemolyticus GN=metG PE=3 SV=2
          Length = 688

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H +E   LASHI L+ K  G
Sbjct: 99  NYHSTHSEENRELASHIYLELKKNG 123


>sp|A7MZT3|SYM_VIBHB Methionyl-tRNA synthetase OS=Vibrio harveyi
           (strain ATCC BAA-1116 / BB120) GN=metG PE=3 SV=2
          Length = 686

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H +E   LASHI L+ K  G
Sbjct: 94  NYHSTHSEENRELASHIYLELKKNG 118


>sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus
           musculus GN=Tmc2 PE=2 SV=1
          Length = 888

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = -1

Query: 237 GRKELSEAKSKEQVAGTKKENPTERKFW*RIVAKARNARCSLSANTSKVQASAEGRRAGY 58
           GRK+      KEQ A  KKE    RK   + + K R+   SL ++ S   + +E   A  
Sbjct: 81  GRKKDRRTSLKEQRASPKKEREALRKEAGKQLRKPRST--SLGSSVSTGDSLSEEELAQI 138

Query: 57  GGEMERKR-----APNKKWPM 10
             ++E K+       NK WPM
Sbjct: 139 LEQVEEKKKLITTVRNKPWPM 159


>sp|Q5E3Z7|SYM_VIBF1 Methionyl-tRNA synthetase OS=Vibrio fischeri
           (strain ATCC 700601 / ES114) GN=metG PE=3 SV=1
          Length = 686

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 447 NFHSVHQQETESLASHIALQNKLRG 373
           N+HS H  E   LASHI L+ K  G
Sbjct: 94  NYHSTHSDENRELASHIYLELKKNG 118


>sp|Q9R1M5|NALP5_MOUSE NACHT, LRR and PYD domains-containing protein 5
            OS=Mus musculus GN=Nlrp5 PE=1 SV=2
          Length = 1163

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 157  LVKNCCEGQKCEMLTLCKHLQSAGFGGRTKG 65
            L +NCCE   C M+T  KHL+S   G    G
Sbjct: 1012 LTQNCCEDLAC-MITTTKHLKSLDLGNNALG 1041
tr_hit_id Q7T3X7
Definition tr|Q7T3X7|Q7T3X7_ONCMY Voltage-gated calcium channel subunit Cav2.2 variant I OS=Oncorhynchus mykiss
Align length 60
Score (bit) 37.4
E-value 0.55
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921696|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_A11.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7T3X7|Q7T3X7_ONCMY Voltage-gated calcium channel subunit Cav...    37   0.55 
tr|Q7T3X6|Q7T3X6_ONCMY Voltage-gated calcium channel subunit Cav...    37   0.55 
tr|Q7T1M1|Q7T1M1_ONCMY Neuronal-type voltage-gated calcium chann...    37   0.55 
tr|A2EYC8|A2EYC8_TRIVA C2 domain containing protein OS=Trichomon...    36   1.6  
tr|A2ZUJ4|A2ZUJ4_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.1  
tr|Q7QE17|Q7QE17_ANOGA AGAP010697-PA (Fragment) OS=Anopheles gam...    35   2.7  
tr|A0C5P0|A0C5P0_PARTE Chromosome undetermined scaffold_150, who...    35   3.5  
tr|A7UTY6|A7UTY6_ANOGA AGAP005940-PA OS=Anopheles gambiae GN=AGA...    35   3.6  
tr|B0DPH8|B0DPH8_LACBS Predicted protein OS=Laccaria bicolor (st...    34   4.6  
tr|Q0DPJ1|Q0DPJ1_ORYSJ Os03g0686400 protein OS=Oryza sativa subs...    34   6.0  
tr|B6KQ80|B6KQ80_TOXGO Putative uncharacterized protein OS=Toxop...    34   6.0  
tr|A0DI62|A0DI62_PARTE Chromosome undetermined scaffold_51, whol...    34   6.0  
tr|B8AF26|B8AF26_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.1  
tr|B8A7N9|B8A7N9_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.8  
tr|B6KI51|B6KI51_TOXGO PHD-zinc finger (C3HC4 type) protein, put...    33   7.8  

>tr|Q7T3X7|Q7T3X7_ONCMY Voltage-gated calcium channel subunit Cav2.2
            variant I OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 2378

 Score = 37.4 bits (85), Expect = 0.55
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = -1

Query: 552  ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASHIALQNKLRG 373
            ER+ S+EG +GHRH+ Q+       N GG  R  R+ HS  +Q   +LA+   L+++ RG
Sbjct: 920  ERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHS-DRQGNGALATRDRLESRGRG 978


>tr|Q7T3X6|Q7T3X6_ONCMY Voltage-gated calcium channel subunit Cav2.2
            variant II OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 2367

 Score = 37.4 bits (85), Expect = 0.55
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = -1

Query: 552  ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASHIALQNKLRG 373
            ER+ S+EG +GHRH+ Q+       N GG  R  R+ HS  +Q   +LA+   L+++ RG
Sbjct: 909  ERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHS-DRQGNGALATRDRLESRGRG 967


>tr|Q7T1M1|Q7T1M1_ONCMY Neuronal-type voltage-gated calcium channel
            subunit Cav2.2 OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 2365

 Score = 37.4 bits (85), Expect = 0.55
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = -1

Query: 552  ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASHIALQNKLRG 373
            ER+ S+EG +GHRH+ Q+       N GG  R  R+ HS  +Q   +LA+   L+++ RG
Sbjct: 909  ERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHS-DRQGNGALATRDRLESRGRG 967


>tr|A2EYC8|A2EYC8_TRIVA C2 domain containing protein OS=Trichomonas
            vaginalis G3 GN=TVAG_054530 PE=4 SV=1
          Length = 2028

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = -1

Query: 372  KTAYESTSAAWEKRLGVLVIPSSNVSKNI*IEKP*VDFATGTHPPGRKELSEAKSKEQVA 193
            K    S+S  +EK          N+  +I I K    F +G HPP +K   E K KE   
Sbjct: 1491 KVRIRSSSENYEKTSSFSSSDDENIGNSI-IGKMTGLFKSGEHPPEKKPEVEEKKKEATK 1549

Query: 192  GTKKENPTERK 160
            G KKE   ++K
Sbjct: 1550 GKKKEESKKKK 1560


>tr|A2ZUJ4|A2ZUJ4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002216 PE=4 SV=1
          Length = 431

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = -1

Query: 195 AGTKK---ENPTERKFW*RIVAKARNARCSLS--ANTSKVQASAEGRRAGYGGEMERKRA 31
           AGTKK   E  +ERK    I A A      +S  AN +++ A+ EGRR+G+  +  R++ 
Sbjct: 247 AGTKKQKYEKISERKIATSIEAAAAGQSSGMSPIANNNRLSATEEGRRSGWSDDPTRRQV 306

Query: 30  P 28
           P
Sbjct: 307 P 307


>tr|Q7QE17|Q7QE17_ANOGA AGAP010697-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP010697 PE=4 SV=4
          Length = 2062

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 25/74 (33%), Positives = 31/74 (41%)
 Frame = -1

Query: 258  ATGTHPPGRKELSEAKSKEQVAGTKKENPTERKFW*RIVAKARNARCSLSANTSKVQASA 79
            A G  P G K  + AK KEQ+A  KK            V K    R     +T K  +  
Sbjct: 904  ADGAGPSGSKGAASAKRKEQLAAFKK------------VTKKGRERNYREKDTKKRSSRE 951

Query: 78   EGRRAGYGGEMERK 37
             GRR   GGE +R+
Sbjct: 952  RGRRGDDGGEPDRR 965


>tr|A0C5P0|A0C5P0_PARTE Chromosome undetermined scaffold_150, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035236001 PE=4 SV=1
          Length = 469

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 296 QRISE*RNHKLISRQVLILQGEKSCLKQR--AKSKWLARRRKTRQRGNSGEELLRRPEMR 123
           QRI++ R  K++  Q L++QG +   KQR   K K L   +K  +     E +L   ++R
Sbjct: 222 QRIAKQRKDKVLENQQLLIQGNEVLKKQRELEKQKQLEEEKKIEEHAKKKERVLEIRKIR 281

Query: 122 D 120
           D
Sbjct: 282 D 282


>tr|A7UTY6|A7UTY6_ANOGA AGAP005940-PA OS=Anopheles gambiae
           GN=AGAP005940 PE=4 SV=1
          Length = 879

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 2/177 (1%)
 Frame = -1

Query: 552 ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASHIALQN-KLR 376
           E     E  +G R N ++ +      +GG         +  +++  +  + +A Q  K +
Sbjct: 169 EEEDDDEEEQGRRSNKRTKKTKASSAKGG---------AAGKKKVVAKKAAVAKQPPKKK 219

Query: 375 GKTAYESTSAAWEKRLGVLVIPSSNVSKNI*IEKP*VDFATGTHPPGRKELSEAK-SKEQ 199
            KTA  +T  A EK+ G          K    EK     ATG    G+K   + K  KE 
Sbjct: 220 AKTAATTTPTAAEKKEGA--------EKPTAAEKKKKKAATGASQDGKKSAGKKKEDKES 271

Query: 198 VAGTKKENPTERKFW*RIVAKARNARCSLSANTSKVQASAEGRRAGYGGEMERKRAP 28
            AG     P E++          N   + S+++S   +S+    +   G   R R+P
Sbjct: 272 AAGGASNGPEEKEDAANNSTNNANDTSTSSSSSSSSSSSSSEAGSKKDGRKSRSRSP 328


>tr|B0DPH8|B0DPH8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_331444 PE=4 SV=1
          Length = 697

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 71  RPSAEACTLEVFAESE---HLAFLAFATILHQNFLSVGFSFFVPATCSLLFASDSSFLP 238
           R S +AC+ E   + +   H   LAF+    ++ L+V  SFF+  TC ++F+     LP
Sbjct: 137 RGSVQACSTEARGQQQELNHACHLAFSRRCLRSHLTVAPSFFLAPTCKIMFSVTLFLLP 195


>tr|Q0DPJ1|Q0DPJ1_ORYSJ Os03g0686400 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0686400 PE=4 SV=1
          Length = 238

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -2

Query: 218 KQRAKSKWLARRRKTRQRGNSGEELLRRPEMRD-----AHSLQTPPKCRLRRKDEGQAMA 54
           ++R ++  LARRR+ R RG S  +  RR + RD     A   +     R RR+ +G A  
Sbjct: 31  RRRRRADELARRREPRGRGESDAQSTRRKQQRDAPGAAARRWRWRSARRRRRRGQGLAPE 90

Query: 53  GRWRGR 36
           G  R R
Sbjct: 91  GTARAR 96