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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921698
Clone id YMU001_000153_B02
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCCAGATTCCCATTCACACAACTCAGTAGTAAGCCAGTTTCACTCTGAGGACAGCACAT
GAGCAGCCAGGATACGAATGAGCCATCAGCAGCATTCCTCTGACTCTAAGTTACAGAGCT
CCCTCTCTTGCTTTACTCACTAGACGAAATCATGATTGGTCTCCGTCAATACATTCATTA
TGACAGTGTGTTTTCCAGGAGAATTTGCACAAACATAGAGCACAGGTTCTTGTGCTAGTA
TCGACCACTAGCAAATTCTCTTCAATTCCACATTACTTTGAAGTCCATGCTGCTAGAAAT
CAATATTAAAAATACCTCCTGTCAATGTAACATTCCACAGGAAGCACAGCAATTGACTGT
ATGGTTTGTGGTAAACTATGAGACACACAGCAGCCTGAATACTACCGTTACAGTAACAGA
ATCAGGACTGTCTTGGCATTCAATGACAACACTCACAATCAACTGCAAGACATGCAGTAT
CACAGATTGGCAAACTCAGAACAACATCCCTGTATTCAACAGCCGCGCTTCTA
■■Homology search results ■■ -
sp_hit_id Q95TU8
Definition sp|Q95TU8|UNC5_DROME Netrin receptor unc-5 OS=Drosophila melanogaster
Align length 124
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921698|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B02.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95TU8|UNC5_DROME Netrin receptor unc-5 OS=Drosophila melanog...    31   4.3  
sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protei...    30   5.6  
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious...    30   9.5  
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious ...    30   9.5  
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectio...    30   9.5  
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectiou...    30   9.5  
sp|Q6FW67|PEX6_CANGA Peroxisomal biogenesis factor 6 OS=Candida ...    30   9.5  
sp|Q8JFR5|KITA_DANRE Mast/stem cell growth factor receptor OS=Da...    30   9.5  

>sp|Q95TU8|UNC5_DROME Netrin receptor unc-5 OS=Drosophila melanogaster
            GN=unc-5 PE=2 SV=1
          Length = 1072

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 33/124 (26%), Positives = 50/124 (40%)
 Frame = +2

Query: 161  LRQYIHYDSVFSRRICTNIEHRFLC*YRPLANSLQFHITLKSMLLEINIKNTSCQCNIPQ 340
            LR Y+  D   SR IC N+E +    +  L  S  F  TL S  L I +++   +   P 
Sbjct: 829  LRIYVVKDFPNSRDICANVEAKLGGSF--LGESQVFAFTLNSRNLNIRVRSADVEAAAPY 886

Query: 341  EAQQLTVWFVVNYETHSSLNTTVTVTESGLSWHSMTTLTINCKTCSITDWQTQNNIPVFN 520
            E         + Y+ H   N ++   E  L      +L ++    S  D+ T  NIP  +
Sbjct: 887  E-------HAIPYQ-HILSNNSILHCEFSLRRQDQNSLCVDFGQGSEDDYYT-FNIPAHS 937

Query: 521  SRAS 532
               S
Sbjct: 938  MSGS 941


>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein
           At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
          Length = 523

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 492 CQSVILHVLQLIVSVVIECQDSPDSVTVTVVFRLLC 385
           CQ+  L+V Q + + +++C  SPD VT  ++   LC
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLC 405


>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious
            bronchitis virus (strain Beaudette CK) GN=1a PE=3 SV=1
          Length = 3951

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 232  VLVSTTSKFSSIPHYFEVHAARNQY*KYLL 321
            VL S T +FS IP Y E   A+N Y K L+
Sbjct: 3460 VLQSVTQEFSHIPSYAEYERAKNLYEKVLV 3489


>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious
            bronchitis virus (strain Beaudette) GN=1a PE=1 SV=1
          Length = 3951

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 232  VLVSTTSKFSSIPHYFEVHAARNQY*KYLL 321
            VL S T +FS IP Y E   A+N Y K L+
Sbjct: 3460 VLQSVTQEFSHIPSYAEYERAKNLYEKVLV 3489


>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious
            bronchitis virus (strain Beaudette CK) GN=rep PE=3 SV=1
          Length = 6629

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 232  VLVSTTSKFSSIPHYFEVHAARNQY*KYLL 321
            VL S T +FS IP Y E   A+N Y K L+
Sbjct: 3460 VLQSVTQEFSHIPSYAEYERAKNLYEKVLV 3489


>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious
            bronchitis virus (strain Beaudette) GN=rep PE=1 SV=1
          Length = 6629

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 232  VLVSTTSKFSSIPHYFEVHAARNQY*KYLL 321
            VL S T +FS IP Y E   A+N Y K L+
Sbjct: 3460 VLQSVTQEFSHIPSYAEYERAKNLYEKVLV 3489


>sp|Q6FW67|PEX6_CANGA Peroxisomal biogenesis factor 6 OS=Candida
           glabrata GN=PEX6 PE=3 SV=1
          Length = 1017

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 173 IHYDSVFSRRICTNIEHRFLC*YRPLANSLQFHITLKSMLLEINIKNTSCQCNIPQEAQQ 352
           +H    +   I   + + FL   R L+N     IT+ S   EI +++     N  +    
Sbjct: 312 LHTQKRYQELILQKLRYYFLTARRILSNGSLIPITIDSSFDEIILEDIDLDVNTIKSDDD 371

Query: 353 LTVWFVVN 376
             VWFVV+
Sbjct: 372 CIVWFVVS 379


>sp|Q8JFR5|KITA_DANRE Mast/stem cell growth factor receptor OS=Danio
           rerio GN=kita PE=2 SV=2
          Length = 976

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 260 LQFHITLKSMLLEINIKNTSCQCNIPQEAQQLTVWFVVNYETHSSLNTTV 409
           +++H  L ++LL++ I+    +  I  E  +LTV    N+  H   N+TV
Sbjct: 1   MEYHCVLFTVLLQLIIQPGRSRPTITPEGPRLTVPLYSNFSLHCQSNSTV 50
tr_hit_id A2GEZ9
Definition tr|A2GEZ9|A2GEZ9_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 60
Score (bit) 37.4
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921698|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B02.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2GEZ9|A2GEZ9_TRIVA Putative uncharacterized protein OS=Trich...    37   0.49 
tr|A2FQK6|A2FQK6_TRIVA Putative uncharacterized protein OS=Trich...    34   5.4  

>tr|A2GEZ9|A2GEZ9_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_396700 PE=4 SV=1
          Length = 330

 Score = 37.4 bits (85), Expect = 0.49
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 353 LTVWFVVNYETHSSLNTTVTVTESGLSWHSMTTLTINCKTCS-ITDWQTQNNIPVFNSRA 529
           L VW+    ++ + +N T T +ESG+ +H++ +LT+  K+CS I +   Q +  ++N  A
Sbjct: 197 LNVWYKALIDSCNIINNTKTTSESGIIYHTVNSLTV--KSCSFINNTTPQGSYLIYNKEA 254


>tr|A2FQK6|A2FQK6_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_448160 PE=4 SV=1
          Length = 349

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +2

Query: 305 IKNTSCQCNIPQEAQQLTVWFVVNYETHSSLNTTVTVTESGLSWHSMTTLTINCKTCS 478
           I  T+   N+  E Q +++W+    ++ + +N T T + +G+ +H   +LT+  K+CS
Sbjct: 203 INYTTVVNNLATEDQTISIWYNALIDSCNIINNTTTQSVNGIIYHQENSLTV--KSCS 258