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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921701
Clone id YMU001_000153_B05
Library
Length 596
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTGAGAAACATTATGGTTGTCAAGGTAACATGTATTATCAGCATACAAATGATCTCT
TTATAAACTGGTAAAATGATATACCAGTCAACAAACCACATTTTGGTAGACAGTAGGAAA
GATCGTTATGTTTGTTGAGGACTCCGTCAGTATCAAGCATCTGACCTTCCTTGAAGGCAC
ACTTCAAGGGAAAGTCCTCTTTGCTATGGACCCTGTGCAAGTCTTTGAACATTACTTTGA
GACGAGGAGGCTTTAACATAACTGGAGGGCCAAGAGCTTAAACTGCCCTCATCCTGCTCT
TCCTTGGCCCTCAAAACCGTGCTCTGCCCAGGAGATTCAGCTCCGTGCAATGATCCCGCT
CCATTCATTGGAGCACCAATATAGCTCACTGAGGCTGGCACTAAAGGGTCGGAAATTCCC
TGGATTCTTGGAAGCTGAACAGAAAACATCGATGCATTCGGCATTTGCGAAGCATTCGAT
ATATGCATGTTTGCCCGGTTGAAACTAGCAGCTCTCTCGTCAACTTTTAACCTATCTTCC
CACATCTTCCCGAGAAGATAATGATCTTGAACTGTTCTGGGTAGTGAATTGGCTGC
■■Homology search results ■■ -
sp_hit_id Q8R0S1
Definition sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor ATF-7 OS=Mus musculus
Align length 55
Score (bit) 31.6
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921701|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B05.
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor A...    32   3.2  
sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus norv...    31   4.1  
sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis...    31   4.1  
sp|Q5R9C9|ATF7_PONAB Cyclic AMP-dependent transcription factor A...    31   4.1  
sp|P17544|ATF7_HUMAN Cyclic AMP-dependent transcription factor A...    31   4.1  
sp|Q03012|SPP1_YEAST COMPASS component SPP1 OS=Saccharomyces cer...    30   7.1  
sp|O14335|SCR1_SCHPO DNA-binding protein scr1 OS=Schizosaccharom...    30   7.1  
sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN...    30   9.2  
sp|P19246|NFH_MOUSE Neurofilament heavy polypeptide OS=Mus muscu...    30   9.2  

>sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor
           ATF-7 OS=Mus musculus GN=Atf7 PE=1 SV=1
          Length = 413

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 488 MHISNASQMPNASMFSVQLPRIQGISDP--LVPASVSYIGAPMNGAGSLHGAESP 330
           MH++N   MP      VQ+P +  ++ P  +VP      G P+N +GS+  +  P
Sbjct: 197 MHLANGQTMPMLPGPPVQMPSVISLARPVSMVPNIPGIPGPPVNNSGSISPSGHP 251


>sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus
           norvegicus GN=Nefh PE=1 SV=4
          Length = 1072

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
 Frame = -1

Query: 374 APMNGAGSLHGA-----------ESPGQSTVLRAKEEQDEGSLSSWPSSYVKASSSQSNV 228
           AP++G GSLH A            + G S+   +       S+S+ PS +  A+SS  ++
Sbjct: 16  APLHGGGSLHYALSRKAGAGGTRSAAGSSSGFHSWARTSVSSVSASPSRFRGAASSTDSL 75

Query: 227 QRLAQGP 207
             L+ GP
Sbjct: 76  DTLSNGP 82


>sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis
           thaliana GN=FBL15 PE=1 SV=2
          Length = 990

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 494 ANMHISNASQMPNASMFSVQLPRI 423
           AN+HI NAS  PN S+ SV LP +
Sbjct: 421 ANLHILNASYCPNISLESVHLPML 444


>sp|Q5R9C9|ATF7_PONAB Cyclic AMP-dependent transcription factor
           ATF-7 OS=Pongo abelii GN=ATF7 PE=2 SV=1
          Length = 483

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 488 MHISNASQMPNASMFSVQLPRIQGISDP--LVPASVSYIGAPMNGAGSLHGAESP 330
           MH++N   MP      VQ+P +  ++ P  +VP      G P+N +GS+  +  P
Sbjct: 197 MHLANGQTMPVLPGPPVQMPSVISLARPVSMVPNIPGIPGPPVNSSGSISPSGHP 251


>sp|P17544|ATF7_HUMAN Cyclic AMP-dependent transcription factor
           ATF-7 OS=Homo sapiens GN=ATF7 PE=1 SV=2
          Length = 494

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 488 MHISNASQMPNASMFSVQLPRIQGISDP--LVPASVSYIGAPMNGAGSLHGAESP 330
           MH++N   MP      VQ+P +  ++ P  +VP      G P+N +GS+  +  P
Sbjct: 208 MHLANGQTMPVLPGPPVQMPSVISLARPVSMVPNIPGIPGPPVNSSGSISPSGHP 262


>sp|Q03012|SPP1_YEAST COMPASS component SPP1 OS=Saccharomyces
           cerevisiae GN=SPP1 PE=1 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -2

Query: 589 IHYPEQFKIIIFSGRCG--KIG*KLTRELLVSTGQTCIYRML--RKCRMHRCFLFSFQES 422
           +H PEQFK ++FS  C   + G     +  +  G+  + + L  RKCR+  C+    Q+S
Sbjct: 51  LHIPEQFKDLVFSFYCPYCQAGITGKNKDAIINGEGSLPKTLWKRKCRISDCYKPCLQDS 110

Query: 421 R 419
           +
Sbjct: 111 K 111


>sp|O14335|SCR1_SCHPO DNA-binding protein scr1
           OS=Schizosaccharomyces pombe GN=scr1 PE=2 SV=1
          Length = 565

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 25/71 (35%), Positives = 33/71 (46%)
 Frame = -1

Query: 440 VQLPRIQGISDPLVPASVSYIGAPMNGAGSLHGAESPGQSTVLRAKEEQDEGSLSSWPSS 261
           VQLP I+ +S  L P+ V  I  P+    +   A +P    V R        SLS+  SS
Sbjct: 436 VQLPSIRSLS--LRPSQVPLI-PPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSS 492

Query: 260 YVKASSSQSNV 228
                +SQSNV
Sbjct: 493 MPHKPASQSNV 503


>sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens
            GN=TULP4 PE=1 SV=2
          Length = 1543

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 274  ELKLPSSCSSLALKTVLCPGDSAPCNDPAPF 366
            E K+P  CSS  L  +  P  S P  DP P+
Sbjct: 931  EKKVPQPCSSATLNRLTVPRYSIPTGDPPPY 961


>sp|P19246|NFH_MOUSE Neurofilament heavy polypeptide OS=Mus musculus
           GN=Nefh PE=1 SV=3
          Length = 1090

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
 Frame = -1

Query: 374 APMNGAGSLHGA-----------ESPGQSTVLRAKEEQDEGSLSSWPSSYVKASSSQSNV 228
           AP++G GSLH +            + G S+   +       S+S+ PS +  A+SS  ++
Sbjct: 16  APLHGGGSLHYSLSRKAGPGGTRSAAGSSSGFHSWARTSVSSVSASPSRFRGAASSTDSL 75

Query: 227 QRLAQGP 207
             L+ GP
Sbjct: 76  DTLSNGP 82
tr_hit_id B4I261
Definition tr|B4I261|B4I261_DROSE GM18689 OS=Drosophila sechellia
Align length 60
Score (bit) 37.0
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921701|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B05.
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4I261|B4I261_DROSE GM18689 OS=Drosophila sechellia GN=GM1868...    37   0.86 
tr|Q9VE45|Q9VE45_DROME CG7709 OS=Drosophila melanogaster GN=CG77...    37   1.1  
tr|Q41817|Q41817_MAIZE Heat shock protein 70 kDa (Fragment) OS=Z...    35   3.3  
tr|Q22AU5|Q22AU5_TETTH SLEI family protein OS=Tetrahymena thermo...    35   3.3  
tr|B5JX45|B5JX45_9GAMM Fumarate hydratase, class II OS=gamma pro...    35   4.3  
tr|Q7PWD1|Q7PWD1_ANOGA AGAP009010-PA (Fragment) OS=Anopheles gam...    34   5.6  
tr|Q6CF33|Q6CF33_YARLI YALI0B10626p OS=Yarrowia lipolytica GN=YA...    34   7.3  

>tr|B4I261|B4I261_DROSE GM18689 OS=Drosophila sechellia GN=GM18689
           PE=4 SV=1
          Length = 678

 Score = 37.0 bits (84), Expect = 0.86
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 407 PLVPASVSYIGAPMNGAGSLHGAESPGQSTVLRAKEE-QDEGSLSSWPSSYVKASSSQSN 231
           P+ P S SY GAP +G+GS  G+ S   S++  A  +    GS  S PSS   A S+ +N
Sbjct: 283 PIAPPSSSY-GAPSSGSGSSSGSFSASPSSLYSAPSKGSSGGSFPSAPSSSYSAPSASAN 341


>tr|Q9VE45|Q9VE45_DROME CG7709 OS=Drosophila melanogaster GN=CG7709
           PE=2 SV=1
          Length = 950

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 407 PLVPASVSYIGAPMNGAGSLHGAESPGQSTVLRAKEE-QDEGSLSSWPSSYVKASSSQSN 231
           P+ P S SY GAP +G+GS  G+ S   S++  A  +    GS  S PSS   A S+ +N
Sbjct: 553 PISPPSSSY-GAPSSGSGSSSGSFSAAPSSLYSAPSKGSSGGSFQSAPSSSYSAPSASAN 611


>tr|Q41817|Q41817_MAIZE Heat shock protein 70 kDa (Fragment) OS=Zea
           mays GN=hsp70-5 PE=2 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = -1

Query: 593 ANSLPRTVQDHYLLGKMWEDRLKVDERAASFNRANMHISNASQMPNASMFSVQLPRIQGI 414
           A ++  T++D  +  K+  D  K  E A     A +   +A+Q+  A  F  ++  ++ +
Sbjct: 122 AYNMRNTIKDEKIASKLAADDKKKIEDAID---AAISWLDANQLAEADEFDDKMKELESL 178

Query: 413 SDPLVPASVSYIGAPMNGAGSLH-----GAESPG 327
           S+P++       GA M GAG +      G+ +PG
Sbjct: 179 SNPIIAKMYQGAGADMGGAGGMDEDAPAGSGAPG 212


>tr|Q22AU5|Q22AU5_TETTH SLEI family protein OS=Tetrahymena thermophila
            SB210 GN=TTHERM_01156780 PE=4 SV=1
          Length = 2397

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
 Frame = -1

Query: 584  LPRTVQDHYLLGKMWEDRLKVDERAASFNRA----NMHISNASQMPNA----SMFSVQLP 429
            +P+ V+ HY LG++++D+  +DE   S+ RA    + +I+   Q+ NA     MF   L 
Sbjct: 1687 VPKCVETHYHLGRVYQDQNMLDEAIGSYQRAIELDSKYINAYIQLGNAYLDKPMFDQALE 1746

Query: 428  RIQGI--SDPLVPASVSYIG 375
              + I   DP  P + + IG
Sbjct: 1747 TYKKILEIDPQKPVAYNNIG 1766


>tr|B5JX45|B5JX45_9GAMM Fumarate hydratase, class II OS=gamma
           proteobacterium HTCC5015 GN=fumC PE=4 SV=1
          Length = 458

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = -1

Query: 494 ANMHISNASQMPNASMFS-VQLPRIQGISDPLVPASVSYIGAPMNGAGSLHGAESPGQST 318
           AN HI N  Q  N ++ S + +     ISD L+PA    +    N A  +      G++ 
Sbjct: 124 ANDHI-NCGQSSNDTIPSCIHISASLQISDQLLPALEHLVNVTRNKAQQVDNCVKTGRTH 182

Query: 317 VLRAKEEQDEGSLSSWPS----SYVKASSSQSNVQRLAQG 210
           ++ A   +   SL++W      +  +  S Q++VQ LAQG
Sbjct: 183 LMDAMPVRLSQSLNAWADQIAHNITRIQSLQASVQSLAQG 222


>tr|Q7PWD1|Q7PWD1_ANOGA AGAP009010-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP009010 PE=4 SV=4
          Length = 433

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
 Frame = -2

Query: 304 RKSRMRAV*ALGPPVML----KPPRLKVMFKDLHRVHSKEDFPLKCA-----FKEGQMLD 152
           R++ MR +     P M     KP   K   K+ + VHS+E  P KCA     FK    L 
Sbjct: 257 RRAHMRMMHEGAKPYMCEECGKPFSSKGALKEHYIVHSEER-PFKCAYCPKSFKNAPRLK 315

Query: 151 TDGVLNKHNDLSYCLPKCGL 92
           T    + HND  Y  P CGL
Sbjct: 316 THE--DTHNDTLYVCPHCGL 333


>tr|Q6CF33|Q6CF33_YARLI YALI0B10626p OS=Yarrowia lipolytica
           GN=YALI0B10626g PE=4 SV=1
          Length = 644

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
 Frame = -1

Query: 536 DRLKVDERAASFNRANMHISNASQMPNASMFSVQL----PRIQG-----ISDPLVPASVS 384
           D  K ++     + +   +S +S  P  S  S +L    P I+       S+P+VPAS S
Sbjct: 185 DPYKTEDPVVPASTSEPAVSTSSSEPAVSTPSSELVVSTPTIESEVPVSTSEPVVPASTS 244

Query: 383 YIGAPMNGAGSLHGAESPGQSTVLRAKEEQDEGSLSSWPSSYVKASSSQSNVQRLAQGP* 204
              AP+  +  +   ESP   T  ++++    G     P + + +S   + V+  ++ P 
Sbjct: 245 ESNAPVVSSKDVTPVESPTPITTTKSEDNVASGLAPEEPITPIGSSKPVTTVK--SEDPV 302

Query: 203 QRGLSLE 183
             GL+ E
Sbjct: 303 ASGLASE 309