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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921702
Clone id YMU001_000153_B06
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACTGATCGTTTCTTTGCTGCCCGTCCTCTCGGGCCTCGGCTTCGTATCAGCGTGTGTGA
CACACTTATGGCTTATACATGTCTTCCTGAAATTTGCAGCTTCTGAGTTCGACGATCCCC
ATTCTCCCACAGACGATCATAGGAGCAGGCGCTTCTGTCGAAGTTTCAGCTTTTATGTGT
CTCGGATTGGAAGCAGTTAGTGTCTCCACGAAACCAGTTGAGACAGTGGTGGCTATTGCT
TGTCATATAAGCATTTTTCTTCCTTTTTGGATCCAGCAATCCTTTGCAGAGAAGGCTGAA
CCAAGTAGAGTTGGAATTTTCAGCTGGATATCATCTTCCAGAGCCTTAAAGCTGAAACAT
TTGTAATTAATAATGTGATGCAGGCAGCGTTCAGCTTTGTCTATTTCTGAATATTGGGAG
TAAATTTTCACAAAATAGACACATTTTCCTGCTGGATTTGAAATTCAGAAGTGGCGAGAT
CCTCTCTGTTGTTTCTTATGACTCACATCACTTCACCAAAGGTTGTAGTGCCTCCTTTTG
GTTGTACATTGCTTAGCCCAAGACAAGTGCTGCGTACAGATAGATCAGCTATCTTCACT
■■Homology search results ■■ -
sp_hit_id Q5UQX0
Definition sp|Q5UQX0|YR383_MIMIV Uncharacterized protein R383 OS=Acanthamoeba polyphaga mimivirus
Align length 45
Score (bit) 33.9
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921702|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B06.
         (599 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UQX0|YR383_MIMIV Uncharacterized protein R383 OS=Acanthamoe...    34   0.65 
sp|Q7VPK9|COAA_HAEDU Pantothenate kinase OS=Haemophilus ducreyi ...    30   9.3  

>sp|Q5UQX0|YR383_MIMIV Uncharacterized protein R383 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R383 PE=1 SV=1
          Length = 348

 Score = 33.9 bits (76), Expect = 0.65
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 503 SHKKQQRGSRHF*ISNPAGKCVYFVKIYSQYSEIDKAERCLHHII 369
           SHKK  + ++ + I+N   K +    IYS+YS+ID  E  L  +I
Sbjct: 124 SHKKLFKTNKQYNITNDINKAINIQLIYSRYSDIDIDENALIQLI 168


>sp|Q7VPK9|COAA_HAEDU Pantothenate kinase OS=Haemophilus ducreyi
           GN=coaA PE=3 SV=1
          Length = 316

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 69  WLIHVFLKFAASEFDDPHS 125
           W IH FLKF  S F DP+S
Sbjct: 239 WYIHRFLKFRCSAFSDPNS 257
tr_hit_id Q4Q8D5
Definition tr|Q4Q8D5|Q4Q8D5_LEIMA ATP-dependent RNA helicase, putative OS=Leishmania major
Align length 52
Score (bit) 33.9
E-value 7.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921702|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B06.
         (599 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4Q8D5|Q4Q8D5_LEIMA ATP-dependent RNA helicase, putative OS=L...    34   7.4  
tr|A4I3L0|A4I3L0_LEIIN ATP-dependent RNA helicase, putative OS=L...    34   7.4  
tr|A4HGH8|A4HGH8_LEIBR ATP-dependent RNA helicase, putative OS=L...    34   7.4  

>tr|Q4Q8D5|Q4Q8D5_LEIMA ATP-dependent RNA helicase, putative
           OS=Leishmania major GN=LmjF28.1310 PE=4 SV=1
          Length = 900

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 260 RKMLI*QAIATTVSTGFVETLTASNPRHIKAETSTEAPAPMIVCGRMGIVEL 105
           R+ L+  A  TT     +  ++  NPR++  +  T AP PM +C    +VEL
Sbjct: 247 RQSLLFSATQTT-DVQMLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVEL 297


>tr|A4I3L0|A4I3L0_LEIIN ATP-dependent RNA helicase, putative
           OS=Leishmania infantum GN=LinJ28.1370 PE=4 SV=1
          Length = 900

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 260 RKMLI*QAIATTVSTGFVETLTASNPRHIKAETSTEAPAPMIVCGRMGIVEL 105
           R+ L+  A  TT     +  ++  NPR++  +  T AP PM +C    +VEL
Sbjct: 247 RQSLLFSATQTT-DVQMLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVEL 297


>tr|A4HGH8|A4HGH8_LEIBR ATP-dependent RNA helicase, putative
           OS=Leishmania braziliensis GN=LbrM28_V2.1410 PE=4 SV=1
          Length = 897

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 260 RKMLI*QAIATTVSTGFVETLTASNPRHIKAETSTEAPAPMIVCGRMGIVEL 105
           R+ L+  A  TT     +  ++  NPR++  +  T AP PM +C    +VEL
Sbjct: 247 RQSLLFSATQTT-DVQMLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVEL 297