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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921704
Clone id YMU001_000153_B08
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTACTCTGCTGCCTGTGGTCCTTCGTGAATAGGCCATCAAGCGAAAAAATCCAAAA
GCTGCCTCCCCATCACTGCAATCTCCGGTGCTTGTAGACGAAGTGACGAGTTTGGCACCC
AAGTGTGCTCCCTTTTCCGGGTATATGCCCAGATCACTCTCTCCGTTCTCTCATTTGTGT
CGACCTCTTCTCCTGTGTCATCATCGTATTTTTCCACCATCACCCTGATATTCGTCAAGA
AAATGGCACTGGCAAGTCCTTTCTTCCCTTGTCTTTTTAAGAATTCAATGGTATTCTTTT
CCAAGTGCTCATCCTTGTCAACGGTGAAGCCTTTCACCTCCGCCAATGCAAGGATGCTGT
TGATACGATCCCCCTCATGTTTGCTATCTCTGTTGTTGCAAATCTCCAGAGTGCTCTCCA
AGTCTGGCATTTGAATAGCTCTGGTTACCACATCCTCATATAAGTTATGCACACCAGCAC
GCCGAACCTTGAGTAAACCAGCATCTTTTAACAATCCACCTAAAGGGGACGTCTCCAGCC
ATTCGCT
■■Homology search results ■■ -
sp_hit_id Q8R7T1
Definition sp|Q8R7T1|SYE2_THETN Glutamyl-tRNA synthetase 2 OS=Thermoanaerobacter tengcongensis
Align length 103
Score (bit) 35.4
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921704|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B08.
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R7T1|SYE2_THETN Glutamyl-tRNA synthetase 2 OS=Thermoanaerob...    35   0.18 
sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditi...    33   0.91 
sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Asperg...    32   2.6  
sp|Q97C22|PGP_THEVO Phosphoglycolate phosphatase OS=Thermoplasma...    30   7.7  

>sp|Q8R7T1|SYE2_THETN Glutamyl-tRNA synthetase 2
           OS=Thermoanaerobacter tengcongensis GN=gltX2 PE=3 SV=1
          Length = 485

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
 Frame = -1

Query: 472 VHNLYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRI------NSILALAEVKGFTVDKD 311
           V +LY+D ++   Q+ D+  T  +    +  + G+ I      NSI  L   KG+  DK 
Sbjct: 363 VISLYKDGLSYVAQIVDMAKTFFV---EEVDYTGEMIEFLKSPNSIKVLEAFKGYLKDKS 419

Query: 310 EHLEKNTIEFLKRQGKK-GLASAIFLTNIRVMVEKYDDDTGEE 185
           E  E +  E++K+  K+ G+    F   IR+ V      TGEE
Sbjct: 420 EITEDDVREWMKKAQKELGVKGKEFFMPIRIAV------TGEE 456


>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis
            elegans GN=lam-2 PE=1 SV=2
          Length = 1535

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
 Frame = -1

Query: 463  LYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALAEVKGFTVDKDEHLE----- 299
            + + V T    + D E+ L++     +K E  R +++   A V+G     D+ ++     
Sbjct: 1355 IVDSVSTADKTLKDAEAALQVLEEFGAKIEKSRNDAVAEFAGVEGINQRLDDIIDAQDKR 1414

Query: 298  KNTIEFLKRQGKKGLASA-IFLTNIRVMVEKYDDDTGEEVDTNERTERVIWAYTRKREHT 122
            +N++   K+       SA + L     + ++Y D    +VDT + TE V +   +  E  
Sbjct: 1415 RNSLPIDKQFVIDYRKSADVLLNETHALADRYKDIIHSDVDTRDSTEAVQYDIEQLMEEL 1474

Query: 121  WVPNSSLR 98
               N +L+
Sbjct: 1475 TDSNENLQ 1482


>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10
           OS=Aspergillus oryzae GN=dbp10 PE=3 SV=1
          Length = 929

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = -1

Query: 418 ESTLEICNNRDSKHEGDR-INSILALAEVKGFTVDKDEHLEKNTIEFLK--RQGKKGLAS 248
           E+  E+ N R+ KHEGD  I++I  +     +   K E  EK + +F++    G KG A+
Sbjct: 608 ETIFEVHNRRNGKHEGDEAIDTIKRIRTTVDYKKKKREMAEKQS-DFVEDASSGNKGEAN 666

Query: 247 AIFLTNIRVMVEKYDDDTGEEVDTN 173
               T      ++ ++D GE V  N
Sbjct: 667 ETEETG--AQPDEDEEDIGEGVPDN 689


>sp|Q97C22|PGP_THEVO Phosphoglycolate phosphatase OS=Thermoplasma
           volcanium GN=TV0283 PE=3 SV=1
          Length = 224

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 352 LALAEVKGFTVDKDEHLEKNTIEFLKRQGKKGLASAIFLTNI 227
           L   +V G   DKD  +    IEF+++  KKG+  ++   N+
Sbjct: 4   LVAIDVDGTLTDKDRLISTRAIEFIRKAEKKGIIVSLLSGNV 45
tr_hit_id A8B349
Definition tr|A8B349|A8B349_GIALA Putative uncharacterized protein OS=Giardia lamblia ATCC 50803
Align length 97
Score (bit) 38.1
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921704|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B08.
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8B349|A8B349_GIALA Putative uncharacterized protein OS=Giard...    38   0.31 
tr|A9TPT2|A9TPT2_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.2  
tr|Q6FVK1|Q6FVK1_CANGA Strain CBS138 chromosome A complete seque...    36   1.2  
tr|A9EYQ5|A9EYQ5_SORC5 Protein kinase OS=Sorangium cellulosum (s...    36   1.5  
tr|Q2G393|Q2G393_NOVAD Putative uncharacterized protein OS=Novos...    34   4.4  
tr|B5RNE1|B5RNE1_BORDL Uncharacterized conserved protein OS=Borr...    33   7.5  
tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum ...    33   7.5  
tr|Q23WM4|Q23WM4_TETTH Cyclic nucleotide-binding domain containi...    33   7.5  

>tr|A8B349|A8B349_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_6542 PE=4 SV=1
          Length = 938

 Score = 38.1 bits (87), Expect = 0.31
 Identities = 29/97 (29%), Positives = 45/97 (46%)
 Frame = -1

Query: 463 LYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALAEVKGFTVDKDEHLEKNTIE 284
           + ED++ +  ++ DL++T+       +K   +  N    L + +G    + EHL     E
Sbjct: 451 MQEDLLRQESKVLDLQNTI-------NKLRAEVSNKNALLTQARGIIASQKEHL--GGAE 501

Query: 283 FLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEEVDTN 173
             KRQGK G +         V V  YDDDTG + D N
Sbjct: 502 KEKRQGK-GASQKSAERRSMVPVASYDDDTGADADPN 537


>tr|A9TPT2|A9TPT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95558 PE=4 SV=1
          Length = 238

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
 Frame = -1

Query: 436 IQMPDLESTLEICNNRDS--KHEGDRINSILALAEVKGFTVDKDEHLEKNTIEFLKRQGK 263
           +Q+ +L +  EI N+  S   H G     +  L + + F  D D   +K+  E+++R  K
Sbjct: 95  VQLFELATVPEIRNHMKSIIGHSGGSWEKLFQLLKNEYFLEDSDRVTKKSFFEWIERH-K 153

Query: 262 KGLASAIFLTNIRVMVEKYDDDTGEEVDTN-ERTERVIWAYTRK 134
           K L +   L    +++E  D++  EE+ TN E+ E VI    ++
Sbjct: 154 KDLLAMKLLKKFEILLE--DEEEVEELTTNWEKVEEVIGVLVKR 195


>tr|Q6FVK1|Q6FVK1_CANGA Strain CBS138 chromosome A complete sequence
            OS=Candida glabrata GN=CAGL0E01265g PE=4 SV=1
          Length = 2095

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 19/94 (20%), Positives = 47/94 (50%)
 Frame = -1

Query: 463  LYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALAEVKGFTVDKDEHLEKNTIE 284
            L++  +    ++ ++++ +E       K   ++I+ I+  +E K      DEH+ K  ++
Sbjct: 875  LHDCSIIETKKLEEMQTQIEQPTIEMLKETAEKIDCIVMTSEEK---TKLDEHMAKPPLD 931

Query: 283  FLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEEV 182
            +LK + ++     + L   R ++ K  + TG+E+
Sbjct: 932  YLKEKARRQRKELVDLVEFRELIRKTTNPTGDEI 965


>tr|A9EYQ5|A9EYQ5_SORC5 Protein kinase OS=Sorangium cellulosum
           (strain So ce56) GN=sce7396 PE=4 SV=1
          Length = 448

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +2

Query: 218 HHPDIRQENGTGKSFLPLSF*EFNGILFQVLILVNGEAFH--LRQCKDAVDTIPLMFAIS 391
           HHP++ +    G         E +G+L+QV+ L++GE  +  LR+ K A   +PL FA+ 
Sbjct: 70  HHPNVAETIDVG---------EEDGVLYQVMELIDGEPLNLVLRESK-ARGGLPLPFALR 119

Query: 392 VVANLQSALQVWH 430
           +VA     L   H
Sbjct: 120 IVAEAALGLHAAH 132


>tr|Q2G393|Q2G393_NOVAD Putative uncharacterized protein
           OS=Novosphingobium aromaticivorans (strain DSM 12444)
           GN=Saro_3245 PE=4 SV=1
          Length = 81

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 128 LPFPGICPDHSLRSLICVDLFS 193
           +P PGIC  HSLRSL C  +FS
Sbjct: 38  IPIPGICSRHSLRSLACFAVFS 59


>tr|B5RNE1|B5RNE1_BORDL Uncharacterized conserved protein
           OS=Borrelia duttonii (strain Ly) GN=BDU_1082 PE=4 SV=1
          Length = 205

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 27/103 (26%), Positives = 48/103 (46%)
 Frame = -1

Query: 376 EGDRINSILALAEVKGFTVDKDEHLEKNTIEFLKRQGKKGLASAIFLTNIRVMVEKYDDD 197
           EGDR+  +L  + +  F    + + +K+    L         +A+ L N+ + VEK+  D
Sbjct: 75  EGDRV--VLLQSSINIFNESDNNYFDKHYFYIL---------NALTLRNVGISVEKFKID 123

Query: 196 TGEEVDTNERTERVIWAYTRKREHTWVPNSSLRLQAPEIAVMG 68
           T E   T+E +   +   T   EH+ +   SL ++A  I + G
Sbjct: 124 TKELDVTSEDSSLNLKNITCDGEHSKISLKSLVIEAGNIELKG 166


>tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum
           bicolor PE=4 SV=1
          Length = 1029

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 CCCKSPECSPSLAFE*LWLPHPHISYAHQHAEP 489
           CCC SP  S   A+   WL HPH+   H HA P
Sbjct: 24  CCCPSP--SMGNAYSRCWL-HPHLPLGHGHAPP 53


>tr|Q23WM4|Q23WM4_TETTH Cyclic nucleotide-binding domain containing
           protein OS=Tetrahymena thermophila SB210
           GN=TTHERM_00923210 PE=4 SV=1
          Length = 866

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = -1

Query: 481 RAGVHNLYEDVVTRAIQMPDLESTLE--ICNNRDSKHEGDRINSILALAEVKGFTVDKDE 308
           +   +N YED   + I    L+  ++  + NN DS + G   +      E+K +    DE
Sbjct: 349 KVNTYNKYEDTFQKMIVKSPLKQKIKDMLYNNEDSLNNGGIFHRKFNQEELKKYNKKFDE 408

Query: 307 HLEKNTIEFLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEE 185
            LEK  +E  K+      ++ +F+  ++    ++D   G +
Sbjct: 409 ELEKRRLEEQKKPEFLNSSAKLFIHKLQY---QFDSKLGSD 446