BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921717|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_C10.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea...    30   4.1  
sp|O93383|NRG1_XENLA Pro-neuregulin-1, membrane-bound isoform OS...    30   5.3  
sp|Q55418|DNAB_SYNY3 Replicative DNA helicase OS=Synechocystis s...    30   5.3  
sp|Q9JL95|PRG3_MOUSE Proteoglycan 3 OS=Mus musculus GN=Prg3 PE=2...    29   9.1  
sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea...    29   9.1  
sp|P43322|NRG1_RAT Pro-neuregulin-1, membrane-bound isoform OS=R...    29   9.1  

>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea
            virus (strain SD-1) PE=3 SV=1
          Length = 3898

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 172  LERRWKILILQHKVNQQTIRGWAKKKEIW 86
            L  R + LI++HKV  +T+ GW  ++E++
Sbjct: 1436 LSGRLRNLIIKHKVRNETVAGWYGEEEVY 1464


>sp|O93383|NRG1_XENLA Pro-neuregulin-1, membrane-bound isoform
           OS=Xenopus laevis GN=nrg1 PE=2 SV=1
          Length = 677

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 1   LLCKHHLLRPSLRNSHFSQSHYTPMLRTSIFLSFLPIHEWSVDSLCVAESKSSTGVLVTS 180
           ++   H++      S FS SHYT     S  ++  P H WS        S+ S  V+VTS
Sbjct: 338 VISSEHVIERETETS-FSTSHYTSTTHHSTTVTQTPSHSWSNGLSESMISEKSYSVIVTS 396


>sp|Q55418|DNAB_SYNY3 Replicative DNA helicase OS=Synechocystis sp.
           (strain PCC 6803) GN=dnaB PE=1 SV=1
          Length = 872

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 34  LRNSHFSQSHYTPMLRTSIFLSFLPIHEWSVDSLCVAESKS 156
           LR  HFSQ+ + P+      LS LPI+     S+ V + +S
Sbjct: 260 LRTGHFSQAEFEPLTAAMGTLSSLPIYIDDTASISVTQMRS 300


>sp|Q9JL95|PRG3_MOUSE Proteoglycan 3 OS=Mus musculus GN=Prg3 PE=2
           SV=1
          Length = 222

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -1

Query: 160 WKILILQHKVNQQTI------RGWAKKKEIWMCGASECSDFG 53
           ++I  L  K+NQ  +      RGW  KK  WM G+  C DFG
Sbjct: 144 YQIQNLARKINQSIVWIGGILRGWFWKKFCWMDGS--CWDFG 183


>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea
            virus (strain CP7) PE=1 SV=1
          Length = 3907

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 172  LERRWKILILQHKVNQQTIRGWAKKKEIW 86
            L  R + LI++HKV  QT+  W  ++E++
Sbjct: 1445 LSGRLRNLIIKHKVRNQTVASWYGEEEVY 1473


>sp|P43322|NRG1_RAT Pro-neuregulin-1, membrane-bound isoform
           OS=Rattus norvegicus GN=Nrg1 PE=1 SV=1
          Length = 662

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 1   LLCKHHLLRPSLRNSHFSQSHYTPMLRTSIFLSFLPIHEWSVDSLCVAESKSSTGVLVTS 180
           ++   H++   +  S FS SHYT     S  ++  P H WS        S+S++ ++++S
Sbjct: 340 VISSEHIVEREVETS-FSTSHYTSTAHHSTTVTQTPSHSWSNGHTESVISESNSVIMMSS 398

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921717|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_C10.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8GD14|B8GD14_9CHLR Arginine biosynthesis bifunctional protei...    33   9.4  

>tr|B8GD14|B8GD14_9CHLR Arginine biosynthesis bifunctional protein
           ArgJ OS=Chloroflexus aggregans DSM 9485 GN=Cagg_0266
           PE=4 SV=1
          Length = 405

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = -2

Query: 426 LADGHVKRPMGLLEAIVVSSCGIEYAH 346
           LADGHV  P G   A  V++CGI+YAH
Sbjct: 5   LADGHVTSPRGWQAA--VAACGIKYAH 29