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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921718
Clone id YMU001_000153_C11
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCTCCTTTCTTTTGATCCTTTCATTAACACGCTTTCCCATTTCCTCTGGATCTTCAAA
GCTATTTTCGATGATTTCTTGAATTTCCCTATCATCTTTGAAAGCCCCGTCCAAAAAGGC
TGTCATATCCTCATAGCTCCCCTTACTCTCTCCAAACATTTCAGCTTCCACGTTAGCTTC
TTCATTTTTTCCTTCATCCTCCTCTGTCTCATCTTCATCATCTTTTTCTATTACTTGTTT
CTGTTCTGTAGAGAAACTGCTTCCATTTCGCATGTGTGCACTTGCCAAGCATTGCCTTCT
CTTAATCACAGTAATCAATCTAGAATCGCCCTGCTTGAATAATTTGAACGCCACATTAGG
ATGGGTCAATGTTAAAGACTCGAGTTGGAGGTGGGTTTGTATGAAGGGGGATGAGAACAT
AGACGAGCCAAGCATGCGCGACATTGCCATCTTCGCTTACGCACCCACTCACTCACCAAA
AGCTCCACTCTTC
■■Homology search results ■■ -
sp_hit_id Q2MI42
Definition sp|Q2MI42|YCF1_SOLLC Putative membrane protein ycf1 OS=Solanum lycopersicum
Align length 38
Score (bit) 30.0
E-value 5.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921718|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_C11.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2MI42|YCF1_SOLLC Putative membrane protein ycf1 OS=Solanum l...    30   5.9  
sp|Q9HHB9|DNAK_HALME Chaperone protein dnaK OS=Halobacterium med...    30   6.0  

>sp|Q2MI42|YCF1_SOLLC Putative membrane protein ycf1 OS=Solanum
            lycopersicum GN=ycf1-A PE=3 SV=1
          Length = 1891

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 122  QPFWTGLSKMIGKFKKSSKIALKIQRKWESVLMKGSKE 9
            +P +  L K IGKFKK   + LKI +    +  K SKE
Sbjct: 961  EPIFKELEKKIGKFKKKYFLTLKILKGKTKLFRKVSKE 998


>sp|Q9HHB9|DNAK_HALME Chaperone protein dnaK OS=Halobacterium
           mediterranei GN=dnaK PE=3 SV=1
          Length = 625

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/52 (25%), Positives = 32/52 (61%)
 Frame = -2

Query: 174 NVEAEMFGESKGSYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNER 19
           NV+ E+  + + + ED+ A L+       E++++ E+  ++ +E+GKR+ ++
Sbjct: 530 NVDDELRADIEAAIEDVEAVLEDDDASTDELEDVTEDLSKELQEIGKRMYQQ 581
tr_hit_id A9RLA1
Definition tr|A9RLA1|A9RLA1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921718|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_C11.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RLA1|A9RLA1_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|Q9FT95|Q9FT95_ARATH Putative uncharacterized protein F8L15_13...    39   0.10 
tr|Q8VZD1|Q8VZD1_ARATH Putative uncharacterized protein (At5g084...    39   0.13 
tr|A9NZ41|A9NZ41_PICSI Putative uncharacterized protein OS=Picea...    39   0.17 
tr|A7QNQ5|A7QNQ5_VITVI Chromosome undetermined scaffold_133, who...    37   0.39 
tr|Q0DW79|Q0DW79_ORYSJ Os02g0827600 protein OS=Oryza sativa subs...    37   0.66 
tr|B8AF65|B8AF65_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.66 
tr|B4FUY6|B4FUY6_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.66 
tr|A7GZD6|A7GZD6_CAMC5 Conserved domain protein OS=Campylobacter...    35   2.5  
tr|A3ACX7|A3ACX7_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|Q4S335|Q4S335_TETNG Chromosome 3 SCAF14756, whole genome shot...    34   3.3  
tr|Q4QCV4|Q4QCV4_LEIMA Putative uncharacterized protein OS=Leish...    33   7.3  
tr|B6HAM5|B6HAM5_PENCH Pc16g13340 protein OS=Penicillium chrysog...    33   9.5  

>tr|A9RLA1|A9RLA1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_116227 PE=4 SV=1
          Length = 304

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = -2

Query: 168 EAEMFGESKGSYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRKEK 1
           E E   E+ G+Y +    ++ + +DD E+QEI+ ++ EDPE M +RV  R++RK +
Sbjct: 83  EMEEGNENDGNYPEWATNVEDSARDDEELQEIMGDALEDPEAMKRRVENRVQRKSR 138


>tr|Q9FT95|Q9FT95_ARATH Putative uncharacterized protein F8L15_130
           OS=Arabidopsis thaliana GN=F8L15_130 PE=4 SV=1
          Length = 287

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 135 YEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRKEK 1
           Y      L+ A KDD E++ ++ +S  +PE M K+V ER+++K K
Sbjct: 80  YPSWAKVLESACKDDEELRAVLGDSIGNPELMRKKVEERVRKKGK 124


>tr|Q8VZD1|Q8VZD1_ARATH Putative uncharacterized protein
           (At5g08400/F8L15_130) OS=Arabidopsis thaliana
           GN=At5g08400 PE=2 SV=1
          Length = 333

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = -2

Query: 129 DMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRKEK 1
           D    L+ A KDD E++ ++ +S  +PE M K+V ER+++K K
Sbjct: 128 DKCRVLESACKDDEELRAVLGDSIGNPELMRKKVEERVRKKGK 170


>tr|A9NZ41|A9NZ41_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 276

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -2

Query: 102 FKDDREIQEIIENSFEDPEEMGKRVNERIKRKEK 1
           F+ D +   I+  +F+DPE++ KR+ ERIK+K+K
Sbjct: 79  FEHDPDAASILMGNFDDPEKLRKRIEERIKKKQK 112


>tr|A7QNQ5|A7QNQ5_VITVI Chromosome undetermined scaffold_133, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002621001 PE=4 SV=1
          Length = 295

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -2

Query: 138 SYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRK 7
           +Y      ++ A KDD E++ ++ +S  +PE M KRV ER+++K
Sbjct: 87  NYPAWAKVMEDACKDDSELRAVLGDSIGNPELMRKRVEERVRKK 130


>tr|Q0DW79|Q0DW79_ORYSJ Os02g0827600 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0827600 PE=2 SV=1
          Length = 276

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = -2

Query: 150 ESKGSYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRK 7
           E   +Y      L+ A +DD E++ I+ +S  +PE M +R+ ER+++K
Sbjct: 63  ELDNTYPGWARVLENACRDDDELRAILGDSIGNPELMKQRIQERVRKK 110


>tr|B8AF65|B8AF65_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09536 PE=4 SV=1
          Length = 276

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = -2

Query: 150 ESKGSYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRK 7
           E   +Y      L+ A +DD E++ I+ +S  +PE M +R+ ER+++K
Sbjct: 63  ELDNTYPGWARVLENACRDDDELRAILGDSIGNPELMKQRIQERVRKK 110


>tr|B4FUY6|B4FUY6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 238

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -2

Query: 138 SYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRK 7
           +Y      L+ A +DD E++ I+ +S  +PE M +R+ ER+++K
Sbjct: 29  TYPGWAKVLENACRDDEELRAILGDSIGNPELMKQRIQERVRKK 72


>tr|A7GZD6|A7GZD6_CAMC5 Conserved domain protein OS=Campylobacter
           curvus (strain 525.92) GN=Ccur92_12740 PE=4 SV=1
          Length = 73

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -2

Query: 159 MFGESKGSYEDMTAFLDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRKEK 1
           ++G     +ED   FLDGA  DD       E++  D  E+ KR  E  KRK+K
Sbjct: 25  IWGIKNNQFEDYLKFLDGAKFDD-------EDALNDAYELEKRKKEATKRKDK 70


>tr|A3ACX7|A3ACX7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008649 PE=4 SV=1
          Length = 220

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = -2

Query: 114 LDGAFKDDREIQEIIENSFEDPEEMGKRVNERIKRK 7
           L+ A +DD E++ I+ +S  +PE M +R+ ER+++K
Sbjct: 19  LENACRDDDELRAILGDSIGNPELMKQRIQERVRKK 54