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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921719
Clone id YMU001_000153_C12
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGTACCTGCGAGAGAGAGAGGTGTGACTCCGGATGATTCTTGTCGGCTACAACTCTCTT
TCCAACGGCTATATACTTTAGATAAGGAAGGTGATCATGGTTGGCCGTGATGTAGTCTTC
GACGAGCATGTTCCTTTTAGGGGGGGACTTCAAGTCCTAGGTCTTCCCCTTTATCCCTGG
ATTTGCCTCTTCTTGGTGACTTGATGATGATTGTTCACCCTATGTGATGAACCCTCTTCC
CCAGTTCTTGTCCCTTAAGACTTGAGATTTTGATGTGCGGTCTTCCCTCTGCCTATGCTG
ATGCAGTGGACGATGTTTCTCATTAGAGTGTTGATAATGAGGAGGAGAAGCCAATTGCTC
CCAGTGGTGGGGGCAAACCTATCAAGTTACCACAGTGGCTGTTGGATACTTTGAGAGATG
CTACGATTTTCAATTTCCCCAGATTGGCGTACTTTGGGTACTGTGAGGCAATCTTGATGA
TTGCAGAAAGTTGAGATAGATACAACTCTTTTT
■■Homology search results ■■ -
sp_hit_id P40201
Definition sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus
Align length 39
Score (bit) 33.9
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921719|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_C12.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1...    34   0.46 
sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1...    33   0.79 
sp|Q6CEA5|ALG10_YARLI Alpha-1,2 glucosyltransferase ALG10 OS=Yar...    33   1.0  
sp|Q6ZU35|K1211_HUMAN Uncharacterized protein KIAA1211 OS=Homo s...    32   2.3  
sp|Q5PR69|K1211_MOUSE Uncharacterized protein KIAA1211 OS=Mus mu...    31   3.0  
sp|Q9NBW1|FRIZ4_DROME Frizzled-4 OS=Drosophila melanogaster GN=f...    31   3.0  
sp|A5CC95|RL10_ORITB 50S ribosomal protein L10 OS=Orientia tsuts...    30   5.0  
sp|P47030|TAX4_YEAST Protein TAX4 OS=Saccharomyces cerevisiae GN...    30   5.1  
sp|A6ZPP1|TAX4_YEAS7 Protein TAX4 OS=Saccharomyces cerevisiae (s...    30   5.1  
sp|P34926|MAP1A_RAT Microtubule-associated protein 1A OS=Rattus ...    30   5.1  
sp|Q5W1J6|FOXM1_XENLA Forkhead box protein M1 OS=Xenopus laevis ...    30   5.1  
sp|Q6VNB8|WDFY3_MOUSE WD repeat and FYVE domain-containing prote...    30   6.5  
sp|Q5A2K0|NST1_CANAL Stress response protein NST1 OS=Candida alb...    30   8.7  

>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1
            OS=Mus musculus GN=Chd1 PE=1 SV=2
          Length = 1711

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 363  WEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDK 247
            W+       Y    EKHR L  HR RE R S    L+D+
Sbjct: 1589 WDHYRQDSRYYSDREKHRKLDDHRSREHRPSLEGGLKDR 1627


>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1
            OS=Homo sapiens GN=CHD1 PE=1 SV=1
          Length = 1709

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 363  WEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKN 244
            W+       Y    EKHR L  HR R+ R++    L+D++
Sbjct: 1588 WDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRS 1627


>sp|Q6CEA5|ALG10_YARLI Alpha-1,2 glucosyltransferase ALG10
           OS=Yarrowia lipolytica GN=ALG10 PE=3 SV=1
          Length = 522

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -3

Query: 502 YLSQLSAIIKIASQYPKYANLGKLKIVASLKVSNSHCGNLIGLPPPLGAI 353
           Y+ QLSA++   S + +  N+    +VA + + NSH  N  G PP  GA+
Sbjct: 170 YMVQLSALMCAVSLFFRQTNILWAAVVAVIAIENSHYSN--GAPPKNGAL 217


>sp|Q6ZU35|K1211_HUMAN Uncharacterized protein KIAA1211 OS=Homo
           sapiens GN=KIAA1211 PE=1 SV=2
          Length = 1233

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -1

Query: 357 QLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKNWGRGFIT*GEQXXXSHQEEANP 178
           +LA  P  Q  ++KHR L Q  Q E    +S+   D+N        GE     H+EE NP
Sbjct: 160 KLAVKPKKQRVSKKHRRLAQDPQHEQGGLESRPCLDQNGHP-----GEDKPTWHEEEPNP 214


>sp|Q5PR69|K1211_MOUSE Uncharacterized protein KIAA1211 OS=Mus
           musculus GN=Kiaa1211 PE=2 SV=2
          Length = 1207

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = -1

Query: 357 QLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKNWGRGFIT*GEQXXXSHQEEANP 178
           +LA  P  Q  + KHR L Q RQ E  + +SQ   D+N        GE     H EE  P
Sbjct: 160 KLAVKPKNQRVSRKHRWLAQDRQNEPGSFESQSSLDQNGQL-----GEDKHIWHGEEPEP 214


>sp|Q9NBW1|FRIZ4_DROME Frizzled-4 OS=Drosophila melanogaster GN=fz4
           PE=2 SV=2
          Length = 705

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 366 HWEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVL 256
           H +Q  SP H+ H  ++H   H H   +  ++ S  L
Sbjct: 638 HHQQRHSPHHHHHQQQQHHQFHPHHNHQHHSTSSHRL 674


>sp|A5CC95|RL10_ORITB 50S ribosomal protein L10 OS=Orientia
           tsutsugamushi (strain Boryong) GN=rplJ PE=3 SV=1
          Length = 169

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
 Frame = -3

Query: 508 ELYLSQLSAIIKIASQYP-----------KYANLGKLKIVASLKVSNSHCGNLIGL 374
           E Y++    I++ A QYP           K A +  ++ +ASL  S SH GN + L
Sbjct: 83  EDYITVPKVILRFADQYPSLKVVGGFVDQKVATMNDIEQLASLATSESHKGNFLSL 138


>sp|P47030|TAX4_YEAST Protein TAX4 OS=Saccharomyces cerevisiae
           GN=TAX4 PE=1 SV=1
          Length = 604

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -1

Query: 354 LASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKNW----GRGFIT 223
           L  P H+ H ++ H P   H      TS  +   DK W      GFIT
Sbjct: 393 LPFPHHHHHHHQLHNPNSHHLHTHHHTSSHKFNEDKPWKSHRDLGFIT 440


>sp|A6ZPP1|TAX4_YEAS7 Protein TAX4 OS=Saccharomyces cerevisiae
           (strain YJM789) GN=TAX4 PE=3 SV=1
          Length = 604

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -1

Query: 354 LASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKNW----GRGFIT 223
           L  P H+ H ++ H P   H      TS  +   DK W      GFIT
Sbjct: 393 LPFPHHHHHHHQLHNPNSHHLHTHHHTSSHKFNEDKPWKSHRDLGFIT 440


>sp|P34926|MAP1A_RAT Microtubule-associated protein 1A OS=Rattus
            norvegicus GN=Map1a PE=1 SV=1
          Length = 2774

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -1

Query: 357  QLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKNWGRGFIT*GEQXXXSHQEEANP 178
            ++ASPP     +  H P HQ    ED+ S+ +  ++ +WG    + G     S ++   P
Sbjct: 987  KMASPPPSGPPSAAHTPFHQ-SPVEDK-SEPRDFQEDSWGETKHSPGVSKEDSEEQTVKP 1044

Query: 177  G-IKGKT*DLKSPPKRNMLVED 115
            G  +G + + K PP R+   +D
Sbjct: 1045 GPEEGTSEEGKGPPTRSPQAQD 1066
tr_hit_id B4PXY9
Definition tr|B4PXY9|B4PXY9_DROYA GE17852 OS=Drosophila yakuba
Align length 29
Score (bit) 34.3
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921719|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_C12.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PXY9|B4PXY9_DROYA GE17852 OS=Drosophila yakuba GN=GE17852 P...    34   3.7  
tr|Q14BJ0|Q14BJ0_MOUSE Chromodomain helicase DNA binding protein...    34   4.9  
tr|B4MAZ1|B4MAZ1_DROVI GJ16009 OS=Drosophila virilis GN=GJ16009 ...    34   4.9  
tr|B4PV56|B4PV56_DROYA GE23509 OS=Drosophila yakuba GN=GE23509 P...    33   6.4  
tr|B5DN74|B5DN74_DROPS GA22861 OS=Drosophila pseudoobscura pseud...    33   8.3  
tr|B4N4F2|B4N4F2_DROWI GK10728 OS=Drosophila willistoni GN=GK107...    33   8.3  
tr|Q17RZ3|Q17RZ3_HUMAN Chromodomain helicase DNA binding protein...    33   8.3  
tr|B3KT33|B3KT33_HUMAN cDNA FLJ37552 fis, clone BRCAN2028319, hi...    33   8.3  

>tr|B4PXY9|B4PXY9_DROYA GE17852 OS=Drosophila yakuba GN=GE17852 PE=4
           SV=1
          Length = 2276

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 348 SPPHYQHSNEKHRPLHQHRQREDRTSKSQ 262
           +PPH+QH  ++H   HQH+Q++ +  + +
Sbjct: 300 TPPHHQHQQQQHHHHHQHQQQQQQQEQQE 328


>tr|Q14BJ0|Q14BJ0_MOUSE Chromodomain helicase DNA binding protein 1
            OS=Mus musculus GN=Chd1 PE=2 SV=1
          Length = 1711

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 363  WEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDK 247
            W+       Y    EKHR L  HR RE R S    L+D+
Sbjct: 1589 WDHYRQDSRYYSDREKHRKLDDHRSREHRPSLEGGLKDR 1627


>tr|B4MAZ1|B4MAZ1_DROVI GJ16009 OS=Drosophila virilis GN=GJ16009 PE=4
            SV=1
          Length = 3439

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 372  PHHWEQLASPPHYQHSNEKHRPLHQHRQ 289
            PHH  Q   PPH+QH    H P H H+Q
Sbjct: 2620 PHHQHQQHPPPHHQHPPHLHPP-HHHQQ 2646


>tr|B4PV56|B4PV56_DROYA GE23509 OS=Drosophila yakuba GN=GE23509 PE=4
           SV=1
          Length = 1473

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 369 HHWEQLASPPHYQ-HSNEKHRPLHQHRQREDRTSK 268
           HH +QL   PH+Q H  +KHR    HR+R   T++
Sbjct: 451 HHQKQLQHRPHHQSHHRKKHRRQQHHRRRGQSTTQ 485


>tr|B5DN74|B5DN74_DROPS GA22861 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA22861 PE=4 SV=1
          Length = 1712

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 369  HHWEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQ 262
            HH++ L  P H+QH  ++ + L +HRQ++    + Q
Sbjct: 1041 HHYQALLHP-HHQHQQQQQQQLEEHRQQQQEEEQQQ 1075


>tr|B4N4F2|B4N4F2_DROWI GK10728 OS=Drosophila willistoni GN=GK10728
           PE=4 SV=1
          Length = 2553

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 372 PHHWEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKNW 241
           PHH +Q   PP  Q   + ++ LH H+Q    +S S      N+
Sbjct: 84  PHHHQQHHPPPPTQQQQQHYQQLHHHQQHAPSSSNSSSSSSANY 127


>tr|Q17RZ3|Q17RZ3_HUMAN Chromodomain helicase DNA binding protein 1
            OS=Homo sapiens GN=CHD1 PE=2 SV=1
          Length = 1709

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 363  WEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKN 244
            W+       Y    EKHR L  HR R+ R++    L+D++
Sbjct: 1588 WDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRS 1627


>tr|B3KT33|B3KT33_HUMAN cDNA FLJ37552 fis, clone BRCAN2028319,
           highly similar to Chromo domain-helicase-DNA-binding
           protein 1 (EC 3.6.1.-) OS=Homo sapiens PE=2 SV=1
          Length = 301

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 363 WEQLASPPHYQHSNEKHRPLHQHRQREDRTSKSQVLRDKN 244
           W+       Y    EKHR L  HR R+ R++    L+D++
Sbjct: 179 WDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRS 218