BP921734 |
Clone id |
YMU001_000153_E06 |
Library |
YMU01 |
Length |
631 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000153_E06. |
Accession |
BP921734 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTTTTTTATACGTATAGATGTCCACAAAATACTAGCAACATTTGCATGGGAGG AGGCATACAATACCCCATCTCAAACATTGGAAGCTACTCCCTAAACTAAAGGCCTTAAAA CAGCAGAAAGCTTGTATGCTTTGATTGCTACAAATTCTGGACTAAAATGCCATGCCATGC TCGTCAGATGCAGTCCTCTCCTCTTCAGATAATGATTGTATTGTGATTGAGGCGATCTGA TTTGCATCCATCACATTGTGCAAAGAATGCTGCAATTTTGCACGCTGATGCTTTTACCTG TATGTATGTTCCTTGTTTAACGAAAGGTTGCCACGAGTATCAATCCTCCTGAAGAGAAAG CAAACTTAGCTTTTCTTCGAGAGAGCCCTCTACAAGACAGGAGGTCCGGCAGCGAGCAGG GATAAGCACGAGGCCAAGATTCCGCTGTTCCAAAGATGCTGATGATGTTGAGAGCGAGGA TGTCAGTGACTCTACACCTGCATCCCTGGAAGAAGGATATATGGGCCTGCATTCGAGAGT ATCGTACAGAATTATGTTCCCCTGCTTGTCGAGACAATAAAAACTGCCGATGAAGAAGCG GNCATCGGAGACGCCCACCTTCATTCTGCGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P27048 |
Definition |
sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus |
Align length |
70 |
Score (bit) |
37.4 |
E-value |
0.062 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RQD3 |
Definition |
tr|A9RQD3|A9RQD3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
76 |
Score (bit) |
82.0 |
E-value |
3.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921734|Adiantum capillus-veneris mRNA, clone: YMU001_000153_E06. (617 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RQD3|A9RQD3_PHYPA Predicted protein (Fragment) OS=Physcomit... 82 3e-14 tr|A7P4Z8|A7P4Z8_VITVI Chromosome chr4 scaffold_6, whole genome ... 77 8e-13 tr|A9NS74|A9NS74_PICSI Putative uncharacterized protein OS=Picea... 73 1e-11 tr|Q6NNL2|Q6NNL2_ARATH At4g18372 OS=Arabidopsis thaliana PE=4 SV=1 72 2e-11 tr|Q653U6|Q653U6_ORYSJ Os06g0677600 protein OS=Oryza sativa subs... 72 2e-11 tr|A2YG64|A2YG64_ORYSI Putative uncharacterized protein OS=Oryza... 72 2e-11 tr|B6SLH9|B6SLH9_MAIZE Sm protein OS=Zea mays PE=4 SV=1 68 4e-10 tr|A8JH94|A8JH94_CHLRE Predicted protein OS=Chlamydomonas reinha... 42 0.038 tr|B6NW69|B6NW69_BRAFL Putative uncharacterized protein (Fragmen... 40 0.084 tr|B6NGG6|B6NGG6_BRAFL Putative uncharacterized protein OS=Branc... 40 0.084 tr|A8QCC6|A8QCC6_BRUMA Small nuclear ribonucleoprotein-associate... 39 0.24 tr|A3LXX4|A3LXX4_PICST Predicted protein OS=Pichia stipitis GN=P... 39 0.32 tr|Q63747|Q63747_RAT Rat snRNP-associated polypeptide N, complet... 38 0.42 tr|Q0CRN1|Q0CRN1_ASPTN Putative uncharacterized protein OS=Asper... 38 0.42 tr|Q1DNR5|Q1DNR5_COCIM Putative uncharacterized protein OS=Cocci... 38 0.54 tr|B0BN51|B0BN51_RAT Snrpb protein (RCG26118, isoform CRA_a) OS=... 37 0.71 tr|A2APD4|A2APD4_MOUSE Small nuclear ribonucleoprotein B OS=Mus ... 37 0.71 tr|Q2KIH6|Q2KIH6_BOVIN SNRPB protein OS=Bos taurus GN=SNRPB PE=2... 37 0.71 tr|Q9UIS4|Q9UIS4_HUMAN Small nuclear ribonucleoprotein B' OS=Hom... 37 0.71 tr|Q6IB35|Q6IB35_HUMAN SNRPB protein OS=Homo sapiens GN=SNRPB PE... 37 0.71 tr|Q66K91|Q66K91_HUMAN Small nuclear ribonucleoprotein polypepti... 37 0.71 tr|Q5XPV6|Q5XPV6_HUMAN Small nuclear ribonucleoprotein polypepti... 37 0.71 tr|Q15182|Q15182_HUMAN SNRPB protein OS=Homo sapiens GN=SNRPB PE... 37 0.71 tr|B4DVS0|B4DVS0_HUMAN cDNA FLJ56740, highly similar to Small nu... 37 0.71 tr|A8MT02|A8MT02_HUMAN Putative uncharacterized protein SNRPB OS... 37 0.71 tr|A2QP90|A2QP90_ASPNC Contig An07c0280, complete genome OS=Aspe... 37 0.71 tr|A5K181|A5K181_PLAVI Small nuclear ribonucleoprotein associate... 37 0.93 tr|Q7SG45|Q7SG45_NEUCR Predicted protein OS=Neurospora crassa GN... 37 0.93 tr|Q2UPT0|Q2UPT0_ASPOR Predicted protein OS=Aspergillus oryzae G... 37 0.93 tr|B8N0B5|B8N0B5_ASPFL Putative uncharacterized protein OS=Asper... 37 0.93
>tr|A9RQD3|A9RQD3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_29588 PE=4 SV=1 Length = 86
Score = 82.0 bits (201), Expect = 3e-14 Identities = 44/76 (57%), Positives = 52/76 (68%) Frame = -2
Query: 610 MKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXLEQ 431 +KVGV D R F+G F+CLDKQGNIILYDT+E R + PSS + E +EQ Sbjct: 1 LKVGVEDGRIFVGKFHCLDKQGNIILYDTVEFRNV-PSSGEVRAE----EDVGGGAPVEQ 55
Query: 430 RNLGLVLIPARCRTSC 383 R+LGLVLIPARCRT C Sbjct: 56 RSLGLVLIPARCRTLC 71
>tr|A7P4Z8|A7P4Z8_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032345001 PE=4 SV=1 Length = 145
Score = 77.0 bits (188), Expect = 8e-13 Identities = 43/78 (55%), Positives = 49/78 (62%) Frame = -2
Query: 616 RRMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXL 437 RRM VGVSD RFF+GSF+C+DKQGNIIL DT+E R SS + Sbjct: 66 RRMLVGVSDGRFFLGSFHCMDKQGNIILQDTVEYRSTRRSS---------------PSPM 110
Query: 436 EQRNLGLVLIPARCRTSC 383 EQR LGL+LIP CRTSC Sbjct: 111 EQRCLGLILIPFSCRTSC 128
>tr|A9NS74|A9NS74_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 113
Score = 73.2 bits (178), Expect = 1e-11 Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Frame = -2
Query: 616 RRMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPI-YPSSRDAGVEXXXXXXXXXXXX 440 R ++VGV+D R F+G F+CLDKQGNIILYD +E R I PSS A Sbjct: 29 RNLRVGVTDGRVFVGKFHCLDKQGNIILYDAVEYRQITKPSSSSAS------------NC 76
Query: 439 LEQRNLGLVLIPARCRTSC 383 +E R+LGL+LI AR RTSC Sbjct: 77 MEHRSLGLILISARVRTSC 95
>tr|Q6NNL2|Q6NNL2_ARATH At4g18372 OS=Arabidopsis thaliana PE=4 SV=1 Length = 78
Score = 72.4 bits (176), Expect = 2e-11 Identities = 38/76 (50%), Positives = 47/76 (61%) Frame = -2
Query: 610 MKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXLEQ 431 M VG+ D RFF+G+F+C+DKQGNIIL DT+E R I SS EQ Sbjct: 1 MLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSS---------------PSPTEQ 45
Query: 430 RNLGLVLIPARCRTSC 383 R LG++LIP+ CRTSC Sbjct: 46 RCLGMILIPSSCRTSC 61
>tr|Q653U6|Q653U6_ORYSJ Os06g0677600 protein OS=Oryza sativa subsp. japonica GN=B1153E06.22 PE=4 SV=1 Length = 116
Score = 72.4 bits (176), Expect = 2e-11 Identities = 41/85 (48%), Positives = 50/85 (58%), Gaps = 7/85 (8%) Frame = -2
Query: 616 RRMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECR-------PIYPSSRDAGVEXXXXXX 458 RRM VGV+D R+F+G F+C+DKQGNI+L D +E R P PSS A Sbjct: 31 RRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPA--------- 81
Query: 457 XXXXXXLEQRNLGLVLIPARCRTSC 383 EQR LGL+LIPA CR+SC Sbjct: 82 -------EQRGLGLILIPAACRSSC 99
>tr|A2YG64|A2YG64_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24156 PE=4 SV=1 Length = 116
Score = 72.4 bits (176), Expect = 2e-11 Identities = 41/85 (48%), Positives = 50/85 (58%), Gaps = 7/85 (8%) Frame = -2
Query: 616 RRMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECR-------PIYPSSRDAGVEXXXXXX 458 RRM VGV+D R+F+G F+C+DKQGNI+L D +E R P PSS A Sbjct: 31 RRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPA--------- 81
Query: 457 XXXXXXLEQRNLGLVLIPARCRTSC 383 EQR LGL+LIPA CR+SC Sbjct: 82 -------EQRGLGLILIPAACRSSC 99
>tr|B6SLH9|B6SLH9_MAIZE Sm protein OS=Zea mays PE=4 SV=1 Length = 120
Score = 68.2 bits (165), Expect = 4e-10 Identities = 38/78 (48%), Positives = 47/78 (60%) Frame = -2
Query: 616 RRMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXL 437 RRM +GV+D R+F G F+C+DKQGNIIL D +E Y S+R Sbjct: 43 RRMLIGVNDGRYFHGLFHCIDKQGNIILQDAVE----YRSARHCS------------PPT 86
Query: 436 EQRNLGLVLIPARCRTSC 383 EQR LGL+LIPA CR+SC Sbjct: 87 EQRCLGLILIPAACRSSC 104
>tr|A8JH94|A8JH94_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_194889 PE=4 SV=1 Length = 106
Score = 41.6 bits (96), Expect = 0.038 Identities = 25/73 (34%), Positives = 36/73 (49%) Frame = -2
Query: 616 RRMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXL 437 R+ +V ++ R G F CLDKQGNIIL +TLE + Sbjct: 20 RKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQLTTATGKK------------------ 61
Query: 436 EQRNLGLVLIPAR 398 E+R++GLVL+P + Sbjct: 62 EERHMGLVLVPVQ 74
>tr|B6NW69|B6NW69_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_237818 PE=4 SV=1 Length = 223
Score = 40.4 bits (93), Expect = 0.084 Identities = 27/69 (39%), Positives = 34/69 (49%) Frame = -2
Query: 613 RMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXLE 434 RM+V + D R FIG+F DK N+IL D E R I P S+ E Sbjct: 14 RMRVTLQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRPKSQ------------KQEEREE 61
Query: 433 QRNLGLVLI 407 +R LGLVL+ Sbjct: 62 KRVLGLVLL 70
>tr|B6NGG6|B6NGG6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_94837 PE=4 SV=1 Length = 219
Score = 40.4 bits (93), Expect = 0.084 Identities = 27/69 (39%), Positives = 34/69 (49%) Frame = -2
Query: 613 RMKVGVSDXRFFIGSFYCLDKQGNIILYDTLECRPIYPSSRDAGVEXXXXXXXXXXXXLE 434 RM+V + D R FIG+F DK N+IL D E R I P S+ E Sbjct: 16 RMRVTLQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRPKSQ------------KQEEREE 63
Query: 433 QRNLGLVLI 407 +R LGLVL+ Sbjct: 64 KRVLGLVLL 72
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