NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921737
Clone id YMU001_000153_E09
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTGTTTTTTTGTTGTACCAACAAGCTAAATCAGGCTTTGTGGATTGAGAAACTTTA
GCGTTGAAGATAGCTCACAAGATATCAATGACTTCATTGTCTTTTTTTTTAAAGCATGTG
CCATATTCAAAATTACAAAAATTGTTACAATCTGGGCAAGCAGTCCTGGCCATTGTAAAT
AATGCAAAGCTATATATGTATAGGTTCTCTACAAATGCCATGCATTTTTCGCATGTACTA
CACGTCTTCAAGAAGTGCATGCTTGAAGATGTTTTAGCAGCACCTATCTCATCAGCTTGG
CTCTCTCAGATTCTAGAACCCCATCACTCAACTTTTTGGAGTCCATCAATCTTGCATGGC
TCTCTTTTAAAAGAACCATATATAATGGATCCTGTGGTGAAAGTTGAAATAGCTTCCATG
TAATGTACCAACAAGTTGTTACACTGCCGAAACATATTAACGAAACTATCCAGAGGATTC
CACTAAGCCATGAGGATTCTTTGTACC
■■Homology search results ■■ -
sp_hit_id A1W0D6
Definition sp|A1W0D6|HLDE_CAMJJ Bifunctional protein hldE OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
Align length 81
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921737|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_E09.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1W0D6|HLDE_CAMJJ Bifunctional protein hldE OS=Campylobacter ...    33   1.0  
sp|Q57627|Y163_METJA Uncharacterized protein MJ0163 OS=Methanoca...    32   1.7  
sp|Q6TG09|HLDE_CAMJE Bifunctional protein hldE OS=Campylobacter ...    31   2.9  
sp|A9BG68|GLGA_PETMO Glycogen synthase OS=Petrotoga mobilis (str...    30   8.4  

>sp|A1W0D6|HLDE_CAMJJ Bifunctional protein hldE OS=Campylobacter
           jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
           GN=hldE PE=3 SV=1
          Length = 461

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +1

Query: 61  ALKIAHKISMTSLSFF-LKHVPYSKLQKLLQSGQAVLAIV--NNAKLYMYRFSTNAMHFS 231
           A  +  KI   S+SF  +K   +   +K ++S + +LA++  N+ K+       + +HF 
Sbjct: 286 AAVVVSKIGSVSVSFDEIKSFKHVDFEKKIKSKEELLALLKQNDKKIVFTNGCFDIVHFG 345

Query: 232 HVLHVFKKCMLEDVLAAPISS 294
           H+ ++ K   L DVL   ++S
Sbjct: 346 HIKYLEKAKRLGDVLVVGLNS 366


>sp|Q57627|Y163_METJA Uncharacterized protein MJ0163
           OS=Methanocaldococcus jannaschii GN=MJ0163 PE=4 SV=1
          Length = 187

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 296 ADEIGAAKTSSSMHFLKTCSTCEKCMAFVENLYIYSFAL 180
           ADE+GA  +S   +  K C   +K + F E+ Y+Y + L
Sbjct: 94  ADEVGATASSIFEYIKKLCGNIKKVVIFKEDSYLYIYPL 132


>sp|Q6TG09|HLDE_CAMJE Bifunctional protein hldE OS=Campylobacter
           jejuni GN=hldE PE=3 SV=2
          Length = 461

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +1

Query: 61  ALKIAHKISMTSLSFF-LKHVPYSKLQKLLQSGQAVLAIV--NNAKLYMYRFSTNAMHFS 231
           A  +  KI   S+SF  +K       +K ++S + +L ++  NN K+       + +HF 
Sbjct: 286 AAVVVSKIGSVSVSFDEIKSFKRVDFEKKIKSKEELLVLLKQNNKKIVFTNGCFDIVHFG 345

Query: 232 HVLHVFKKCMLEDVLAAPISS 294
           H+ ++ K   L DVL   ++S
Sbjct: 346 HIKYLDKAKRLGDVLIVGLNS 366


>sp|A9BG68|GLGA_PETMO Glycogen synthase OS=Petrotoga mobilis (strain
           DSM 10674 / SJ95) GN=glgA PE=3 SV=1
          Length = 483

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 277 LKHLQACTS*RRVVHAKNAWHL*RTYTYIALHYLQWPGLLAQIVTIFVILNMAH 116
           LK ++ C     V++  N WH      Y+  HYLQ   +L +I TI  I N+ +
Sbjct: 120 LKTIKECEPDTNVINI-NDWHTSLIPVYLKTHYLQ-DNILKKIATILTIHNIGY 171
tr_hit_id A9NRG4
Definition tr|A9NRG4|A9NRG4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 57
Score (bit) 84.7
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921737|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_E09.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NRG4|A9NRG4_PICSI Putative uncharacterized protein OS=Picea...    85   2e-15
tr|A7QRL1|A7QRL1_VITVI Chromosome undetermined scaffold_151, who...    78   3e-13
tr|A5BX36|A5BX36_VITVI Putative uncharacterized protein OS=Vitis...    78   3e-13
tr|B6TVP4|B6TVP4_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|B6T457|B6T457_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|B4FXZ9|B4FXZ9_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|A9T5B8|A9T5B8_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|Q5VPL8|Q5VPL8_ORYSJ Os06g0581300 protein OS=Oryza sativa subs...    67   6e-10
tr|B8B432|B8B432_ORYSI Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|Q5VPL7|Q5VPL7_ORYSJ Putative uncharacterized protein P0566A10...    65   2e-09
tr|Q7DLT9|Q7DLT9_ARATH Putative uncharacterized protein (Fragmen...    56   9e-07
tr|Q7DLS5|Q7DLS5_ARATH Putative uncharacterized protein OS=Arabi...    56   9e-07
tr|O04158|O04158_ARATH Putative uncharacterized protein (Fragmen...    56   9e-07
tr|Q949W5|Q949W5_ARATH Putative uncharacterized protein At1g2275...    56   1e-06
tr|Q2V4L9|Q2V4L9_ARATH Uncharacterized protein At1g22750.3 OS=Ar...    55   1e-06
tr|O80547|O80547_ARATH T22J18.8 protein OS=Arabidopsis thaliana ...    55   1e-06
tr|O64379|O64379_ARATH Putative uncharacterized protein OS=Arabi...    55   1e-06
tr|A3BD21|A3BD21_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|B7FK17|B7FK17_MEDTR Putative uncharacterized protein OS=Medic...    53   7e-06
tr|A2BGM8|A2BGM8_DANRE Novel protein similar to ubiquitin protei...    34   3.6  
tr|Q0IKV1|Q0IKV1_NPVLS ORF168 OS=Leucania separata nuclear polyh...    34   4.7  
tr|A9RDP6|A9RDP6_PHYPA Predicted protein OS=Physcomitrella paten...    33   6.0  
tr|B5U6L0|B5U6L0_9ARAC Cytochrome b OS=Damon diadema GN=CYTB PE=...    33   6.1  
tr|A9P1V2|A9P1V2_PICSI Putative uncharacterized protein OS=Picea...    33   7.8  

>tr|A9NRG4|A9NRG4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 132

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 35/57 (61%), Positives = 45/57 (78%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHARLMDSK 335
           Y+ES+W+    W V LICFGS+TTCWYI  +LF++SP+DPLY VLLKE HAR + S+
Sbjct: 68  YRESTWIGAFTWTVLLICFGSMTTCWYIAIQLFKMSPRDPLYFVLLKERHARWLSSQ 124


>tr|A7QRL1|A7QRL1_VITVI Chromosome undetermined scaffold_151, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005401001 PE=4 SV=1
          Length = 252

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 34/50 (68%), Positives = 40/50 (80%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESH 356
           YKESSW+S  LWI+ LICFGS+TTC YI  +LFQLS QDPLY+VLL   +
Sbjct: 187 YKESSWISAFLWIILLICFGSITTCIYIVQQLFQLSSQDPLYLVLLNNGN 236



 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
 Frame = -3

Query: 502 KESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSP---QDPLYMVLLK 365
           KES+ +S ILW + L+CFGS+TTC YI  +  +LS    QD +Y VLL+
Sbjct: 65  KESNRVSAILWTILLVCFGSITTCAYIVLQFSKLSSESVQDAIYHVLLR 113


>tr|A5BX36|A5BX36_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017204 PE=4 SV=1
          Length = 269

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 34/50 (68%), Positives = 40/50 (80%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESH 356
           YKESSW+S  LWI+ LICFGS+TTC YI  +LFQLS QDPLY+VLL   +
Sbjct: 139 YKESSWISAFLWIILLICFGSITTCIYIVQQLFQLSSQDPLYLVLLNNGN 188



 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
 Frame = -3

Query: 502 KESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSP---QDPLYMVLLK 365
           KES+W+S ILW + L+CFGS+TTC YI  +  ++S    QD +Y VLL+
Sbjct: 65  KESNWVSAILWTILLVCFGSITTCAYIVLQFSKMSSESVQDAIYHVLLR 113


>tr|B6TVP4|B6TVP4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 238

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 32/52 (61%), Positives = 42/52 (80%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHAR 350
           +KESSW+S  +WIV LICFGS+TTC YI  +LF++S QDP+Y VLL  SH++
Sbjct: 185 HKESSWISTTIWIVLLICFGSITTCGYIVIQLFKVSYQDPIYHVLL-NSHSK 235



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQL----SPQDPLYMVLLKESH 356
           YKE++W+S  +W+V L CFGS  TC YI  KL ++    S QDPL ++ +++ +
Sbjct: 65  YKEANWVSSAVWVVLLFCFGSAVTCAYIVKKLLEVTSAGSSQDPLDLLFIRQGN 118


>tr|B6T457|B6T457_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 242

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 32/52 (61%), Positives = 42/52 (80%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHAR 350
           +KESSW+S  +WIV LICFGS+TTC YI  +LF++S QDP+Y VLL  SH++
Sbjct: 185 HKESSWISTTIWIVLLICFGSITTCGYIVIQLFKVSYQDPIYHVLL-NSHSK 235



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQL----SPQDPLYMVLLKESH 356
           YKE++W+S  +W+V L CFGS  TC YI  KL ++    S QDPL ++ +++ +
Sbjct: 65  YKEANWVSSAVWVVLLFCFGSAVTCAYIVKKLLEVTSAGSSQDPLDLLFIRQGN 118


>tr|B4FXZ9|B4FXZ9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 237

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 32/52 (61%), Positives = 42/52 (80%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHAR 350
           +KESSW+S  +WIV LICFGS+TTC YI  +LF++S QDP+Y VLL  SH++
Sbjct: 185 HKESSWISTTIWIVLLICFGSITTCGYIVIQLFKVSYQDPIYHVLL-NSHSK 235



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQL----SPQDPLYMVLLKESH 356
           YKE++W+S  +W+V L CFGS  TC YI  KL ++    S QDPL ++ +++ +
Sbjct: 65  YKEANWVSSAVWVVLLFCFGSAVTCAYIVKKLLEVTSAGSSQDPLDLLFIRQGN 118


>tr|A9T5B8|A9T5B8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_88277 PE=4 SV=1
          Length = 199

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHAR 350
           YKES+  S + W V LICFGS+TTCWYI  + F++SP DP Y VLLK+   R
Sbjct: 141 YKESNLGSRVTWTVLLICFGSITTCWYIAIEFFKMSPDDPAYYVLLKDRTIR 192


>tr|Q5VPL8|Q5VPL8_ORYSJ Os06g0581300 protein OS=Oryza sativa subsp.
           japonica GN=P0566A10.33-1 PE=2 SV=1
          Length = 255

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 30/58 (51%), Positives = 45/58 (77%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHARLMDSKK 332
           +KES+W+S  +WI  LICFGS+TTC YI  +LFQ+S +DP+Y VLL  SH + +++++
Sbjct: 185 HKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLL-NSHNKSLNAEQ 241



 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLS----PQDPLYMVLLKE 362
           YKE +W+S   W+V L CFGS+ TC Y+  KLF++      QDPL ++ L++
Sbjct: 65  YKEVNWISSFFWVVLLYCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQ 116


>tr|B8B432|B8B432_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23490 PE=4 SV=1
          Length = 255

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/70 (44%), Positives = 43/70 (61%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLLKESHARLMDSKKLS 326
           +KES+W+S  +WI  LICFGS+TTC YI  + FQ+S QDP+Y VLL   +  L   +   
Sbjct: 185 HKESNWISTAIWICLLICFGSITTCGYIVIQFFQVSYQDPIYHVLLNTRNKSLNAEQGRL 244

Query: 325 DGVLESERAK 296
             ++ S   K
Sbjct: 245 PSIIPSRSVK 254



 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLS----PQDPLYMVLLKESH 356
           YKE +W+S   W+V L CFGS+ TC Y+  KLF++      QDPL ++ L++ +
Sbjct: 65  YKEVNWISSFFWVVLLYCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGN 118


>tr|Q5VPL7|Q5VPL7_ORYSJ Putative uncharacterized protein
           P0566A10.33-2 OS=Oryza sativa subsp. japonica
           GN=P0566A10.33-2 PE=4 SV=1
          Length = 242

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLSPQDPLYMVLL 368
           +KES+W+S  +WI  LICFGS+TTC YI  +LFQ+S +DP+Y VLL
Sbjct: 185 HKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLL 230



 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
 Frame = -3

Query: 505 YKESSWLSGILWIVSLICFGSVTTCWYITWKLFQLS----PQDPLYMVLLKE 362
           YKE +W+S   W+V L CFGS+ TC Y+  KLF++      QDPL ++ L++
Sbjct: 65  YKEVNWISSFFWVVLLYCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQ 116