NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921740
Clone id YMU001_000153_F02
Library
Length 381
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGCAAGGCCCCCACCTTACATCTATTCAAAAGATTCTAATGCTTGCAAGCATATCCTTT
TATAGGTGCTGGCCACAACATGACATCCCAGTGAAGAAGATTTGCAAATATTTTTTGTGC
TTTAACAAGGACTCCACACTTGCGTACAAAGGCACCAAAGCAATACCAAGCACAAAATCA
TTGGCCAATAGGCCACTTCTGCACAACCCGAGGCTCTCGACACATTCTCGCCTTGTCTTG
AGCCTTGCAAGCCACTTCCTCGTAGGTCGAAGGTATATTCATTGCAAGATCACAAAGAGA
TGGTGAGTTTATCTCTGTACTCCTCCATTTGCACCTCTTACTCCCTAATTGGCTACATTG
GTGTTGTGTCTTCCCTCATAC
■■Homology search results ■■ -
sp_hit_id O82363
Definition sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana
Align length 33
Score (bit) 34.3
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921740|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_F02.
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protei...    34   0.19 
sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protei...    34   0.25 
sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protei...    33   0.33 
sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containi...    33   0.33 
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1...    33   0.33 
sp|Q9C7V5|PP104_ARATH Putative pentatricopeptide repeat-containi...    33   0.43 
sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protei...    33   0.57 
sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protei...    32   0.74 
sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containi...    32   0.74 
sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containi...    32   0.74 
sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protei...    32   0.74 
sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protei...    32   0.74 
sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protei...    32   1.3  
sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  
sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containi...    31   2.2  
sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|P59248|Y402_MYCPE UPF0078 membrane protein MYPE4020 OS=Mycopl...    30   2.8  
sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protei...    30   3.7  
sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protei...    30   3.7  
sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protei...    30   3.7  
sp|Q75D46|BUR1_ASHGO Serine/threonine-protein kinase BUR1 OS=Ash...    30   3.7  
sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containi...    30   4.8  

>sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protein
           At2g46050, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E39 PE=2 SV=1
          Length = 590

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -1

Query: 150 FVRKCGVLVKAQKIFANLLHWDVMLWPAPIKGY 52
           F  KCG++V+A+++F  +L  D++LW A +  Y
Sbjct: 186 FYGKCGLIVEARRVFEAVLDRDLVLWNALVSSY 218


>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein
           At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
          Length = 665

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG L  A  +F+N+ H D++ W A I+G+A
Sbjct: 340 KCGELDCAATVFSNMNHKDILSWTAMIQGWA 370


>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H69 PE=2 SV=1
          Length = 704

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG LVKA+ +F      D+++W + I GYA
Sbjct: 378 KCGELVKAKLVFDRFSSKDIIMWNSIISGYA 408


>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing
           protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84
           PE=3 SV=1
          Length = 685

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG + KA+ +F +++  D++ W   I+GYA
Sbjct: 259 KCGKMEKARSVFDSMVEKDIVTWSTMIQGYA 289


>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1
           OS=Homo sapiens GN=HERC1 PE=1 SV=1
          Length = 4861

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -1

Query: 348 LGSK--RCKWRSTEINSPSLCDLAMNIPSTYEEVACKAQDKARMCREPRVVQKW--PIGQ 181
           LGS   R +WR     S  LC L       +EEV   A D +R C  P  +Q    PI  
Sbjct: 310 LGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTGDAPIVS 369

Query: 180 *FCAWYCFGA 151
             C  Y +G+
Sbjct: 370 ETCEVYVWGS 379


>sp|Q9C7V5|PP104_ARATH Putative pentatricopeptide repeat-containing
           protein At1g64310 OS=Arabidopsis thaliana GN=PCMP-E65
           PE=3 SV=1
          Length = 552

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 162 CFGAFVR---KCGVLVKAQKIFANLLHWDVMLWPAPIKGYAC 46
           C  A V+   K G++V+A K+F ++   D+ LW   I GY C
Sbjct: 143 CGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGC 184


>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E88 PE=2 SV=1
          Length = 1028

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG++  A+K+F++L  W V+   A I GY+
Sbjct: 576 KCGIIKDARKVFSSLPEWSVVSMNALIAGYS 606


>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein
           At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
          Length = 705

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG LVK++ IF      D+++W + I GYA
Sbjct: 378 KCGELVKSKLIFDRFPSKDIIMWNSIISGYA 408


>sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containing
           protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92
           PE=3 SV=1
          Length = 850

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 162 CFGAFVRKCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           C      KCG++ +A  +F+N+   DV+ W A + GY+
Sbjct: 269 CLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306



 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 153 AFVRKCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           A   +C  L  A+K+F  +  WDV+ W + I+ YA
Sbjct: 170 AMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYA 204


>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing
           protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77
           PE=3 SV=1
          Length = 686

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGY 52
           KCG L KA+ +F N+   DV+ W A I  Y
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAY 385
tr_hit_id A7QK10
Definition tr|A7QK10|A7QK10_VITVI Chromosome undetermined scaffold_109, whole genome shotgun sequence OS=Vitis vinifera
Align length 32
Score (bit) 40.0
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921740|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_F02.
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QK10|A7QK10_VITVI Chromosome undetermined scaffold_109, who...    40   0.059
tr|A5BKA9|A5BKA9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.059
tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|Q0IV66|Q0IV66_ORYSJ Os11g0109600 protein OS=Oryza sativa subs...    35   2.5  
tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea...    35   2.5  
tr|A3C7V3|A3C7V3_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2ZAP3|A2ZAP3_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2DYV2|A2DYV2_TRIVA Surface antigen BspA-like OS=Trichomonas ...    35   2.5  
tr|A3B2H6|A3B2H6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A2Y335|A2Y335_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genom...    34   4.2  
tr|Q8BNF7|Q8BNF7_MOUSE Putative uncharacterized protein (Fragmen...    33   5.5  
tr|Q8S693|Q8S693_ORYSJ Putative uncharacterized protein OJ1004_D...    33   5.5  
tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1    33   5.5  
tr|Q10IY6|Q10IY6_ORYSJ Os03g0441400 protein OS=Oryza sativa subs...    33   5.5  
tr|Q0DJA4|Q0DJA4_ORYSJ Os05g0307200 protein OS=Oryza sativa subs...    33   5.5  
tr|B8AWD0|B8AWD0_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|B4FW77|B4FW77_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.5  
tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  
tr|A7PAW7|A7PAW7_VITVI Chromosome chr16 scaffold_10, whole genom...    33   5.5  
tr|A7NSK1|A7NSK1_VITVI Chromosome chr18 scaffold_1, whole genome...    33   5.5  
tr|A2XIE6|A2XIE6_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|A1YKG1|A1YKG1_BRASY Putative uncharacterized protein OS=Brach...    33   5.5  
tr|A2VDK8|A2VDK8_BOVIN HERC1 protein OS=Bos taurus GN=HERC1 PE=2...    33   5.5  
tr|A7QEG3|A7QEG3_VITVI Chromosome chr1 scaffold_84, whole genome...    29   5.5  
tr|A7PSZ8|A7PSZ8_VITVI Chromosome chr8 scaffold_29, whole genome...    33   7.2  
tr|A5BS92|A5BS92_VITVI Putative uncharacterized protein OS=Vitis...    33   7.2  
tr|B8A6T7|B8A6T7_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.4  
tr|A9TDA2|A9TDA2_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.4  
tr|A7QLC1|A7QLC1_VITVI Chromosome chr11 scaffold_118, whole geno...    33   9.4  

>tr|A7QK10|A7QK10_VITVI Chromosome undetermined scaffold_109, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00000887001 PE=4 SV=1
          Length = 785

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = -1

Query: 150 FVRKCGVLVKAQKIFANLLHWDVMLWPAPIKG 55
           F  KCG+LV+AQ++F+++ H DV+ W A I G
Sbjct: 153 FYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184


>tr|A5BKA9|A5BKA9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005683 PE=4 SV=1
          Length = 785

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = -1

Query: 150 FVRKCGVLVKAQKIFANLLHWDVMLWPAPIKG 55
           F  KCG+LV+AQ++F+++ H DV+ W A I G
Sbjct: 153 FYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184


>tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_175641 PE=4 SV=1
          Length = 723

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG L +A+K+F++L H DV+ W A + GYA
Sbjct: 296 KCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326


>tr|Q0IV66|Q0IV66_ORYSJ Os11g0109600 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0109600 PE=4 SV=1
          Length = 996

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG + KA+++F  + H D + W A + GYA
Sbjct: 570 KCGEMAKAREVFDKMRHKDAVAWGAMVGGYA 600


>tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 394

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG +  AQK+F  +L  DV+ W   I GYA
Sbjct: 261 KCGSIGSAQKVFDKMLQRDVVSWNVAIAGYA 291


>tr|A3C7V3|A3C7V3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_031375 PE=4 SV=1
          Length = 1069

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG + KA+++F  + H D + W A + GYA
Sbjct: 643 KCGEMAKAREVFDKMRHKDAVAWGAMVGGYA 673


>tr|A2ZAP3|A2ZAP3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34823 PE=4 SV=1
          Length = 895

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG + KA+++F  + H D + W A + GYA
Sbjct: 698 KCGEMAKAREVFDKMRHKDAVAWGAMVGGYA 728


>tr|A2DYV2|A2DYV2_TRIVA Surface antigen BspA-like OS=Trichomonas
           vaginalis G3 GN=TVAG_255550 PE=4 SV=1
          Length = 482

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
 Frame = +1

Query: 13  HLTSIQKILMLASISFYRCWPQHDIPVKK-----------ICKYFLCFNKDSTLAYKGTK 159
           ++T +  I  + + SFY CW   +I +              C   +CF     LAY G +
Sbjct: 242 NVTILGSISSIGNYSFYNCWNLTNITISDGLTYIGDYAFYNCTNLICFTISDGLAYVGFR 301

Query: 160 AIPSTKSLAN 189
           A    KSL N
Sbjct: 302 AFQECKSLTN 311


>tr|A3B2H6|A3B2H6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017248 PE=4 SV=1
          Length = 620

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG + +A+++F +++  DV+ W A I GYA
Sbjct: 277 KCGEIAEARRVFDSIIDKDVVAWNAMITGYA 307


>tr|A2Y335|A2Y335_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19422 PE=4 SV=1
          Length = 620

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 141 KCGVLVKAQKIFANLLHWDVMLWPAPIKGYA 49
           KCG + +A+++F +++  DV+ W A I GYA
Sbjct: 277 KCGEIAEARRVFDSIIDKDVVAWNAMITGYA 307