BP921752
Clone id YMU001_000153_G05
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTACTCGGACGATACCAGCCACCAGAAATCAGCATCTACCACACTCAGCTGATCAGAGGA
TGGATGACTCGATACAAAATTGCGCAGCGATGTCCCTGAGTTGAAATAAAGATGGGGGTT
GTTAACCTCCTTCCAGCATGCGCTCCTGGACTCAAAGAACTCGAAAGAAGTCGGAAAAAG
AAAACAAGTATTGAGGAGAATGTAGTAACAGCTTGGATCCTTTCCATTGCGGGTCGTGGA
GAGGTAAAAAGTATTGGGGCCTTGCATAGAGAGCGAGGGAGGAGGGAGCGGGAGCACTTT
GACAGACCCAGTGAGGCAGTTGAAAACGATAAAGTCGTAGGACTCCGCTGCATCAGGCCT
GCGCACAATGGCTGAGATGAGGCCTCCTGCAGAGCAAAGAAAGAGGTCGTGAAAAAAGGG
GGCATCAATGTCCATATACTTGAGTCTGTGGGCCACGTGAGAGCAATTGCGGCCACCCAG
TAAGGCAGAGAACAGGGTTGGGAAGGGGAGGCCGGAAGAAAGCCTTCTGTTCAAGCTCTG
AGGTTTCC
■■Homology search results ■■ -
sp_hit_id P57094
Definition sp|P57094|AXN1_DANRE Axin-1 OS=Danio rerio
Align length 49
Score (bit) 31.6
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921752|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_G05.
(548 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P57094|AXN1_DANRE Axin-1 OS=Danio rerio GN=axin1 PE=1 SV=2 32 2.6
sp|P14859|PO2F1_HUMAN POU domain, class 2, transcription factor ... 30 5.9
sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 O... 30 7.7
sp|Q19720|HM38_CAEEL Homeobox protein ceh-38 OS=Caenorhabditis e... 28 9.5

>sp|P57094|AXN1_DANRE Axin-1 OS=Danio rerio GN=axin1 PE=1 SV=2
Length = 835

Score = 31.6 bits (70), Expect = 2.6
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -3

Query: 153 ESRSACWKEVNNPHLYFNSGTSLRNFVSSHPSSDQLSVVDADFWWLVSS 7
E R A W+E NP+ Y NSG +L S++ S Q DAD L S
Sbjct: 294 EYRHASWREPVNPY-YVNSGYALAPATSANDSEQQSMSSDADTLSLTDS 341


>sp|P14859|PO2F1_HUMAN POU domain, class 2, transcription factor 1
OS=Homo sapiens GN=POU2F1 PE=1 SV=2
Length = 743

Score = 30.4 bits (67), Expect = 5.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1

Query: 142 APGLKELERSRKKKTSIEENVVTA 213
+PG++ L R RKK+TSIE N+ A
Sbjct: 370 SPGIEGLSRRRKKRTSIETNIRVA 393


>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1
OS=Homo sapiens GN=NOTCH1 PE=1 SV=4
Length = 2555

Score = 30.0 bits (66), Expect = 7.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2

Query: 511 PPLPNPVLCLTGWPQLLSRGPQTQVYGH*C 422
PPL P+LCL P L +RGP+ G C
Sbjct: 2 PPLLAPLLCLALLPALAARGPRCSQPGETC 31


>sp|Q19720|HM38_CAEEL Homeobox protein ceh-38 OS=Caenorhabditis
elegans GN=ceh-38 PE=2 SV=2
Length = 641

Score = 27.7 bits (60), Expect(2) = 9.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3

Query: 465 CSHVAHRLKYMDIDAPFFHDLFLCSAGGLISAIVRRP 355
C +A LK I F + LC + G +S ++R P
Sbjct: 323 CKRIAFELKNHSIPQAIFAERILCRSQGTLSDLLRNP 359



Score = 20.4 bits (41), Expect(2) = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3

Query: 534 LNRRLSSGLPFPTLFSALLGGRNCSHVA 451
LN+ LSS + PT+ S+ + +H+A
Sbjct: 265 LNQALSSVISTPTISSSNIPTPPSAHIA 292


tr_hit_id Q95YK1
Definition tr|Q95YK1|Q95YK1_CIOSA Protocadherin OS=Ciona savignyi
Align length 83
Score (bit) 36.2
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921752|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_G05.
(548 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q95YK1|Q95YK1_CIOSA Protocadherin OS=Ciona savignyi PE=2 SV=1 36 1.2
tr|P95985|P95985_SULSO Orf c04047 protein OS=Sulfolobus solfatar... 35 2.0
tr|A3E3K3|A3E3K3_PFIPI TB2/DP1 HVA22 family protein OS=Pfiesteri... 35 2.6
tr|B1TG79|B1TG79_9BURK Putative uncharacterized protein OS=Burkh... 35 3.4
tr|B1FRF3|B1FRF3_9BURK Putative uncharacterized protein OS=Burkh... 35 3.4
tr|A8IEE8|A8IEE8_CHLRE Predicted protein OS=Chlamydomonas reinha... 35 3.4
tr|B7Y1S8|B7Y1S8_RUMHA Putative uncharacterized protein OS=Blaut... 34 4.4
tr|B1FRP3|B1FRP3_9BURK Putative uncharacterized protein OS=Burkh... 34 4.4
tr|Q58SZ6|Q58SZ6_9ACTO Rep OS=Micromonospora rosaria GN=rep PE=4... 34 5.8
tr|B1TGS4|B1TGS4_9BURK Putative uncharacterized protein OS=Burkh... 34 5.8
tr|B5CTM7|B5CTM7_9BACE Putative uncharacterized protein OS=Bacte... 33 7.5
tr|A4U3H0|A4U3H0_9PROT Sensor protein OS=Magnetospirillum gryphi... 33 9.8
tr|A8N0Q5|A8N0Q5_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 9.8

>tr|Q95YK1|Q95YK1_CIOSA Protocadherin OS=Ciona savignyi PE=2 SV=1
Length = 1177

Score = 36.2 bits (82), Expect = 1.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3

Query: 456 VAHRLKYMDIDAPFFH--DLFLCSAGGLISAIVRRPDAAESYDFIVFNCLTGSVKVXXXX 283
V R++ +D D+P F ++ L S GL S + D E Y F V + TG +++
Sbjct: 620 VITRIQAVDYDSPMFSKVEISLLSVDGLKST--QETDGVEPYSFFVLDRATGDLRLNMST 677

Query: 282 XXXXSMQGPNTFYLSTTRNGKDP 214
+ G + + T NG+ P
Sbjct: 678 ADLNDIVGSHVIVVKATDNGQPP 700


>tr|P95985|P95985_SULSO Orf c04047 protein OS=Sulfolobus
solfataricus GN=orf c04047 PE=4 SV=1
Length = 126

Score = 35.4 bits (80), Expect = 2.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -1

Query: 488 LPYWVAAIALTWPTDSSIWTLMPPFFTTSF-----FALQEASSQPLCAGLMQRSPTTLSF 324
+P ++A +A+ P S+ ++ PFFT F + + PL +SP L+
Sbjct: 11 IPLYIAVVAIVPPPFPSVMSIFSPFFTLFLKKSLDFNIPIEPTAPLILSPKTKSPPILNV 70

Query: 323 STASLGLSK 297
AS+G+SK
Sbjct: 71 LPASIGISK 79


>tr|A3E3K3|A3E3K3_PFIPI TB2/DP1 HVA22 family protein OS=Pfiesteria
piscicida PE=2 SV=1
Length = 131

Score = 35.0 bits (79), Expect = 2.6
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -1

Query: 509 SPSQPCSLPYWVAAIALTWPTDSSIWTLMPPFFTTSFFALQEASSQPLCAGLMQRSPTTL 330
+P++ L YW+ + ++W T W L PF+ SF + LC L P+ L
Sbjct: 32 TPARKTWLCYWIGYVLVSWLTYYFEWVLRCPFYMLSFVFVDLYCEAQLCLVLYLVLPSVL 91

Query: 329 SFST 318
T
Sbjct: 92 GIET 95


>tr|B1TG79|B1TG79_9BURK Putative uncharacterized protein
OS=Burkholderia ambifaria MEX-5 GN=BamMEX5DRAFT_6795
PE=4 SV=1
Length = 358

Score = 34.7 bits (78), Expect = 3.4
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Frame = -1

Query: 506 PSQPCSLPYWVAAIAL---TWPTDSSIWTLMPPFFTTSFFALQEASS----QPLCAGLMQ 348
P +LP A + TWPT S M FT S+ A + S+ P+ +++
Sbjct: 156 PMMSTTLPELAAMSCIVDTTWPTTSPPCVAMSDAFTASWLACRAFSAFWRTVPVSCSMLE 215

Query: 347 RSPTTLSFSTASLGLSKCSRSLLPRSLCKAP 255
+S S A+ +C RS+LP + +AP
Sbjct: 216 ----AVSCSDAACSSVRCDRSVLPVEISRAP 242


>tr|B1FRF3|B1FRF3_9BURK Putative uncharacterized protein
OS=Burkholderia ambifaria IOP40-10
GN=BamIOP4010DRAFT_6614 PE=4 SV=1
Length = 372

Score = 34.7 bits (78), Expect = 3.4
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Frame = -1

Query: 506 PSQPCSLPYWVAAIAL---TWPTDSSIWTLMPPFFTTSFFALQEASS----QPLCAGLMQ 348
P +LP A + TWPT S M FT S+ A + S+ P+ +++
Sbjct: 156 PMMSTTLPELAAMSCIVDTTWPTTSPPCVAMSDAFTASWLACRAFSAFWRTVPVSCSMLE 215

Query: 347 RSPTTLSFSTASLGLSKCSRSLLPRSLCKAP 255
+S S A+ +C RS+LP + +AP
Sbjct: 216 ----AVSCSDAACSSVRCDRSVLPVEISRAP 242


>tr|A8IEE8|A8IEE8_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_143922 PE=4 SV=1
Length = 1367

Score = 34.7 bits (78), Expect = 3.4
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -1

Query: 449 TDSSIWTLM----PPFFTTSFFALQEASSQPLCAGLMQRSPTTLSFSTASLGLSKCSRSL 282
T+S W M PP S A A ++ LC+G + R P S +S G SKCS L
Sbjct: 783 TESDSWPAMLAHAPPAQVASLVATLAAVARRLCSGSLLRPP---SSGGSSAGSSKCSSGL 839

Query: 281 LP 276
+P
Sbjct: 840 VP 841


>tr|B7Y1S8|B7Y1S8_RUMHA Putative uncharacterized protein OS=Blautia
hansenii DSM 20583 GN=BLAHAN_01965 PE=4 SV=1
Length = 527

Score = 34.3 bits (77), Expect = 4.4
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -3

Query: 513 GLPFPTL-FSALLGGRNCSHVAHRLKYMDIDAPFFHDLFLCSAGGLISAIVRRP 355
G+ FP L ALLGG ++ ++YM +DA + ++ L + G +AIVR P
Sbjct: 337 GIFFPLLVLGALLGG---AYSTFAVQYMGLDASYISNMVLLAMAGYFTAIVRAP 387


>tr|B1FRP3|B1FRP3_9BURK Putative uncharacterized protein
OS=Burkholderia ambifaria IOP40-10
GN=BamIOP4010DRAFT_6706 PE=4 SV=1
Length = 126

Score = 34.3 bits (77), Expect = 4.4
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -1

Query: 467 IALTWPTDSSIWTLMPPFFTTSFFALQEASSQPLCAGLMQRSPTTLSFSTASLGLSKCS- 291
+ TWPT T++P F + FA E + + L A + S CS
Sbjct: 28 VPTTWPT-----TVLPLFAISDAFAASELACRALSAFCFTVPVSCSMLDAVSCSADACSS 82

Query: 290 ----RSLLPRSLCKAPILFTSPRPAMER 219
RS+LP ++C+A + S P R
Sbjct: 83 VRDDRSMLPAAICRAAVAIDSLPPRTVR 110


>tr|Q58SZ6|Q58SZ6_9ACTO Rep OS=Micromonospora rosaria GN=rep PE=4
SV=1
Length = 582

Score = 33.9 bits (76), Expect = 5.8
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3

Query: 336 RRTPLHQACAQWLR*GLLQSKERGREKRGHQCPYT*VCGPRESNCGHPVRQRTGLGRGGR 515
R TP ++ CA WL G+ K GR + G C V QR LG GGR
Sbjct: 431 RVTPCNERCANWLLYGVQPKKAHGRLQAG--------------RCKGKVHQRATLGIGGR 476

Query: 516 K 518
+
Sbjct: 477 R 477


>tr|B1TGS4|B1TGS4_9BURK Putative uncharacterized protein
OS=Burkholderia ambifaria MEX-5 GN=BamMEX5DRAFT_6990
PE=4 SV=1
Length = 444

Score = 33.9 bits (76), Expect = 5.8
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = -1

Query: 467 IALTWPTDSSIWTLMPPFFTTSFFALQEASSQPLCAGLMQRSPTTLSFSTASLGLSKCS- 291
+ TWPT T++P F + FA E + + L A S CS
Sbjct: 79 VPTTWPT-----TVLPLFAISDAFAASELACRALSAFCFTVPVNCSMLDAVSCNADACSS 133

Query: 290 ----RSLLPRSLCKAPILFTSPRPAMER 219
RS+LP ++C+A + S P R
Sbjct: 134 VRDDRSMLPAAICRAAVAIDSLPPRTVR 161