NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921753
Clone id YMU001_000153_G06
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCACAACAATAGAGGTGCAAATAAGCTTCAAGACAAAGAGCGTTAGCTGACTGAGTAT
GATAGAGTGTGAAGAGTTATGATCCTAAACCTGACTACAAATGCAAAATTTCCCAAATTA
TACATCAATATGCCGCTGCAGGTTGCCAATTACACAATCCCAGATCACCCCATTTCTGCC
GTTCAATTACATGACAGGGGAGTTCAACTGTTGTTGAACAAAGTCCTTTCCAAAAGAATT
TGTAACCATGCGTAAGCTCTGTGAGAAAGCTTTGGAAGGGGAATAAAATCATAAAATGGG
CACTACCAAAGTAGTTTGAGGTATTGCCTCAAGTGGTGCCTCAGTGCATTCCCATAAATG
CAAAAAATACTGGTATCCAGATTGTCAATGATACTACTGCGAGTAGGTACTGCCTCGCAA
GAATGTTTGCCAGAACTCCAGCAAATGGCCTTGTGGTGGACCTTAACTGTGCCGTGACAA
CAAGGTTCTGAGCTGTTGGCATTGCAGACAAAACCAAGAGAACAAGACTGCTCAAAGCAT
CAGTAGGAAGCCATCTGTGGTGCTGAATAGCTT
■■Homology search results ■■ -
sp_hit_id P34228
Definition sp|P34228|SEF1_YEAST Putative transcription factor SEF1 OS=Saccharomyces cerevisiae
Align length 36
Score (bit) 35.8
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921753|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_G06.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34228|SEF1_YEAST Putative transcription factor SEF1 OS=Sacch...    36   0.16 
sp|Q9EPK7|XPO7_MOUSE Exportin-7 OS=Mus musculus GN=Xpo7 PE=2 SV=3      35   0.26 
sp|Q5R9G4|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3      34   0.45 
sp|Q9UIA9|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3      34   0.45 
sp|Q5ZLT0|XPO7_CHICK Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1     34   0.45 
sp|Q569Z2|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-B P...    34   0.59 
sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-A P...    34   0.59 
sp|P87164|SEF1_KLULA Putative transcription factor SEF1 OS=Kluyv...    31   3.8  

>sp|P34228|SEF1_YEAST Putative transcription factor SEF1
           OS=Saccharomyces cerevisiae GN=SEF1 PE=1 SV=4
          Length = 1148

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  DPKPDYKCKISQIIHQYAAAGCQLHNPRSPHFCRSI 188
           DP+P   CK+S +I Q A   C +  PRS H  +++
Sbjct: 393 DPEPTMYCKLSSLIKQLAIETCWIRTPRSTHISQAL 428


>sp|Q9EPK7|XPO7_MOUSE Exportin-7 OS=Mus musculus GN=Xpo7 PE=2 SV=3
          Length = 1087

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDDALENALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 899


>sp|Q5R9G4|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3
          Length = 1087

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 899


>sp|Q9UIA9|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3
          Length = 1087

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 899


>sp|Q5ZLT0|XPO7_CHICK Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1
          Length = 1087

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 899


>sp|Q569Z2|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-B PE=2
           SV=1
          Length = 1087

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDEALDNALQTFVKLLLSVPHSDLLDYPKLSQSYYSLLEVLTQ 899


>sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-A PE=1
           SV=1
          Length = 1087

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDEALDNALQTFVKLLLSVPHSDLLDYPKLSQSYYSLLEVLTQ 899


>sp|P87164|SEF1_KLULA Putative transcription factor SEF1
           OS=Kluyveromyces lactis GN=SEF1 PE=4 SV=3
          Length = 1119

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 81  DPKPDYKCKISQIIHQYAAAGCQLHNPRSPHFCRSI 188
           DP+P    K+S +I Q A   C +  PRS H  +++
Sbjct: 414 DPEPTLYNKLSSLIKQLAIETCWIRTPRSTHISQAL 449
tr_hit_id A9SDV0
Definition tr|A9SDV0|A9SDV0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 70
Score (bit) 66.2
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921753|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_G06.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SDV0|A9SDV0_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|Q00WE7|Q00WE7_OSTTA Chromosome 14 contig 1, DNA sequence OS=O...    62   3e-08
tr|A4SAR3|A4SAR3_OSTLU AEC family transporter: auxin efflux OS=O...    58   3e-07
tr|B5VDS2|B5VDS2_YEAS6 YBL066Cp-like protein OS=Saccharomyces ce...    36   1.7  
tr|B3LNK0|B3LNK0_YEAS1 Suppressor protein SEF1 OS=Saccharomyces ...    36   1.7  
tr|A6ZKN4|A6ZKN4_YEAS7 Suppressor of essential function OS=Sacch...    36   1.7  
tr|Q6NUU3|Q6NUU3_DANRE Xpo7 protein (Fragment) OS=Danio rerio GN...    34   5.0  
tr|Q4T2V7|Q4T2V7_TETNG Chromosome undetermined SCAF10166, whole ...    34   5.0  
tr|B3DLK1|B3DLK1_DANRE Putative uncharacterized protein (Fragmen...    34   5.0  
tr|B1H1M7|B1H1M7_DANRE Xpo7 protein OS=Danio rerio GN=xpo7 PE=2 ...    34   5.0  
tr|A1A4I8|A1A4I8_BOVIN XPO7 protein OS=Bos taurus GN=XPO7 PE=2 SV=1    34   5.0  
tr|B4DSP8|B4DSP8_HUMAN cDNA FLJ56596, highly similar to Exportin...    34   5.0  
tr|A8K607|A8K607_HUMAN cDNA FLJ76855, highly similar to Homo sap...    34   5.0  
tr|A7RIM5|A7RIM5_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   8.6  
tr|A0C4M0|A0C4M0_PARTE Chromosome undetermined scaffold_15, whol...    33   8.6  

>tr|A9SDV0|A9SDV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164421 PE=4 SV=1
          Length = 714

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 33/70 (47%), Positives = 48/70 (68%)
 Frame = -3

Query: 568 IQHHRWLPTDAXXXXXXXXXSAMPTAQNLVVTAQLRSTTRPFAGVLANILARQYLLAVVS 389
           +Q  R LP D          SAMP+AQNLV+ +QLR++TR  +GVLA++L RQY L++V 
Sbjct: 640 LQSARILPADPVYNLLLMAQSAMPSAQNLVLLSQLRTSTRRLSGVLASLLLRQYALSIVP 699

Query: 388 LTIWIPVFFA 359
           +T+W+ +F A
Sbjct: 700 ITLWMALFLA 709


>tr|Q00WE7|Q00WE7_OSTTA Chromosome 14 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot14g00650 PE=4 SV=1
          Length = 400

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 29/63 (46%), Positives = 38/63 (60%)
 Frame = -3

Query: 553 WLPTDAXXXXXXXXXSAMPTAQNLVVTAQLRSTTRPFAGVLANILARQYLLAVVSLTIWI 374
           W PTD+         S MP AQNLV+  QLR  TRP A  LA ++ RQY++A+V +T W+
Sbjct: 333 WFPTDSMAALVLLTMSCMPAAQNLVLLTQLREATRPMAPRLAALMLRQYVIAIVPVTFWL 392

Query: 373 PVF 365
             F
Sbjct: 393 TAF 395


>tr|A4SAR3|A4SAR3_OSTLU AEC family transporter: auxin efflux
           OS=Ostreococcus lucimarinus (strain CCE9901)
           GN=OSTLU_25832 PE=4 SV=1
          Length = 607

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 27/63 (42%), Positives = 36/63 (57%)
 Frame = -3

Query: 553 WLPTDAXXXXXXXXXSAMPTAQNLVVTAQLRSTTRPFAGVLANILARQYLLAVVSLTIWI 374
           W P+D          S MP AQNLV+  QLR  TRP A  LA ++ RQY+ A++ +T W+
Sbjct: 540 WFPSDRSAALVLLTMSCMPAAQNLVLLTQLRDATRPLATRLAALMLRQYVFAIIPVTFWL 599

Query: 373 PVF 365
             F
Sbjct: 600 TAF 602


>tr|B5VDS2|B5VDS2_YEAS6 YBL066Cp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_20380 PE=4 SV=1
          Length = 1148

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  DPKPDYKCKISQIIHQYAAAGCQLHNPRSPHFCRSI 188
           DP+P   CK+S +I Q A   C +  PRS H  +++
Sbjct: 393 DPEPTMYCKLSSLIKQLAIETCWIRTPRSTHISQAL 428


>tr|B3LNK0|B3LNK0_YEAS1 Suppressor protein SEF1 OS=Saccharomyces
           cerevisiae (strain RM11-1a) GN=SCRG_03027 PE=4 SV=1
          Length = 1148

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  DPKPDYKCKISQIIHQYAAAGCQLHNPRSPHFCRSI 188
           DP+P   CK+S +I Q A   C +  PRS H  +++
Sbjct: 393 DPEPTMYCKLSSLIKQLAIETCWIRTPRSTHISQAL 428


>tr|A6ZKN4|A6ZKN4_YEAS7 Suppressor of essential function
           OS=Saccharomyces cerevisiae (strain YJM789) GN=SEF1 PE=4
           SV=1
          Length = 1148

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  DPKPDYKCKISQIIHQYAAAGCQLHNPRSPHFCRSI 188
           DP+P   CK+S +I Q A   C +  PRS H  +++
Sbjct: 393 DPEPTMYCKLSSLIKQLAIETCWIRTPRSTHISQAL 428


>tr|Q6NUU3|Q6NUU3_DANRE Xpo7 protein (Fragment) OS=Danio rerio
           GN=xpo7 PE=2 SV=1
          Length = 542

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 307 VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 354


>tr|Q4T2V7|Q4T2V7_TETNG Chromosome undetermined SCAF10166, whole
            genome shotgun sequence. (Fragment) OS=Tetraodon
            nigroviridis GN=GSTENG00008146001 PE=4 SV=1
          Length = 965

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368  IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
            +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 881  VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSFYSLLEVLTQ 928


>tr|B3DLK1|B3DLK1_DANRE Putative uncharacterized protein (Fragment)
           OS=Danio rerio PE=2 SV=1
          Length = 675

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 440 VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 487


>tr|B1H1M7|B1H1M7_DANRE Xpo7 protein OS=Danio rerio GN=xpo7 PE=2
           SV=1
          Length = 1087

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 368 IFCIYGN-ALRHHLRQYLKLLW*CPFYDFIPLPKLSHRAYAWLQILLE 228
           +F +YG+ AL + L+ ++KLL   P  D +  PKLS   Y+ L++L +
Sbjct: 852 VFRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQ 899