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NBDC - LSDB Archive
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BP921757
Clone id YMU001_000153_G10
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCAACTAAATTGGCTTGCTTTAAGAAAGTTTAGACAGAGGGCTTCTGGATAAGGAAGCC
GGAGACCTGCACCTGCCTCTTAGCGTCAAAGCCCAGCACGCGGATGAAGGCTTCAGGATA
CTCCTTGGCGCACTCTGCAATTTCACGCAGCACAGCAGCGGCATCTTGGCAGCCAAACAT
GGGCAGCTTCCACATCACCCAGTACCGCCCATCGTAGTAGCCGCTGCCGTGGAAGTGCTC
TCGGTACACGCTCCCGATTTTGTCGAACTCAATGCAGGGGGTCCAGCCCTTCCGGACCAT
GAAGTCCACCTGCTTCGCAATCTGCTCACTTGACAAAGGCGGCAAGTAGGACAGAGTCTC
GAACTTCTTGTTGTCATACGGCTTCCACACAAGCATGGCGCTCACACGGCTGCCATTAGA
GATGGCGAGCGGGTTGGGGCTCTTGGGGGCGAACAGGGTAGTGGCCTTGAGACCAGAGAA
GCTCTTTGACAAGCTCTCTGCGGGGGCGCAGC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 157
Score (bit) 187.0
E-value 2.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921757|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_G10.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   187   2e-47
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   185   1e-46
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   183   5e-46
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   182   8e-46
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   180   3e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   180   4e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   180   4e-45
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   179   5e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   179   5e-45
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   179   7e-45
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   179   7e-45
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   179   9e-45
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   178   1e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   177   2e-44
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   177   2e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   177   3e-44
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   177   3e-44
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   176   4e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   176   4e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   176   6e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   176   6e-44
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   176   6e-44
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   176   6e-44
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   176   7e-44

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  187 bits (475), Expect = 2e-47
 Identities = 88/157 (56%), Positives = 111/157 (70%), Gaps = 5/157 (3%)
 Frame = -3

Query: 495 SLSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 328
           SL+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 327 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 151
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 150 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKP 40
           ++E+ EC KEYP AFIRV+GFD  RQVQ   F++ KP
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  185 bits (469), Expect = 1e-46
 Identities = 92/162 (56%), Positives = 116/162 (71%), Gaps = 6/162 (3%)
 Frame = -3

Query: 507 APAES-LSKSFSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYL 343
           +PA+S +   F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYL
Sbjct: 18  SPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYL 77

Query: 342 PPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQ 166
           PPLSSEQ+AK+VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC 
Sbjct: 78  PPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCN 137

Query: 165 DAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKP 40
           D++ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 138 DSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  183 bits (464), Expect = 5e-46
 Identities = 90/161 (55%), Positives = 112/161 (69%), Gaps = 5/161 (3%)
 Frame = -3

Query: 504 PAES-LSKSFSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLP 340
           PA+S +   F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLP
Sbjct: 17  PAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLP 76

Query: 339 PLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDA 160
           PLS E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA
Sbjct: 77  PLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDA 136

Query: 159 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           + V+ E+ E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 137 SQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  182 bits (462), Expect = 8e-46
 Identities = 87/164 (53%), Positives = 112/164 (68%), Gaps = 8/164 (4%)
 Frame = -3

Query: 507 APAESLSKSFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETL 352
           A A ++  +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETL
Sbjct: 7   AGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETL 66

Query: 351 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFG 172
           SYLP L+ EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFG
Sbjct: 67  SYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFG 126

Query: 171 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKP 40
           C +A+ V+ E+ ECAK YP+AFIRV+GFD  RQVQ   F++ KP
Sbjct: 127 CTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  182 bits (461), Expect = 1e-45
 Identities = 89/163 (54%), Positives = 112/163 (68%), Gaps = 7/163 (4%)
 Frame = -3

Query: 507 APAES-LSKSFSGLKA------TTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLS 349
           +PA+S +   F+GL +      T  FA  S  P   SNG RV  M VW P   KKFETLS
Sbjct: 16  SPAQSNMVVPFAGLHSSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLS 72

Query: 348 YLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGC 169
           YLPPL+ EQ+ ++VD+++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC
Sbjct: 73  YLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGC 132

Query: 168 QDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKP 40
            D++ VL+E+ EC+K YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 133 TDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  182 bits (461), Expect = 1e-45
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 4/152 (2%)
 Frame = -3

Query: 480 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 313
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 312 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 133
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 132 CAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  181 bits (458), Expect = 2e-45
 Identities = 89/162 (54%), Positives = 117/162 (72%), Gaps = 5/162 (3%)
 Frame = -3

Query: 507 APAES-LSKSFSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLP 340
           APA++ +   F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLP
Sbjct: 20  APAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLP 79

Query: 339 PLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 163
           PLSSE +AK+VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D
Sbjct: 80  PLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTD 139

Query: 162 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           ++ VL+E+ E  K YP++FIR++GFD  RQVQ   F+  KP+
Sbjct: 140 SSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  181 bits (458), Expect = 2e-45
 Identities = 87/166 (52%), Positives = 109/166 (65%), Gaps = 5/166 (3%)
 Frame = -3

Query: 507 APAESLSKSFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLP 340
           A   S+  SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP
Sbjct: 17  AAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLP 76

Query: 339 PLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 163
            LS EQ+ K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D
Sbjct: 77  DLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTD 136

Query: 162 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPSV*TF 25
           A  VL E+ E  K YP+A+IR++GFD  RQVQ   F+  KP    F
Sbjct: 137 ATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  180 bits (457), Expect = 3e-45
 Identities = 88/163 (53%), Positives = 116/163 (71%), Gaps = 5/163 (3%)
 Frame = -3

Query: 507 APAES-LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLP 340
           AP ++ L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLP
Sbjct: 15  APVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLP 74

Query: 339 PLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 163
           PL+ EQ+ K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  D
Sbjct: 75  PLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTD 134

Query: 162 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPSV 34
           AA VL+E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 135 AAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  180 bits (456), Expect = 4e-45
 Identities = 89/162 (54%), Positives = 112/162 (69%), Gaps = 6/162 (3%)
 Frame = -3

Query: 504 PAES-LSKSFSGLKATTLF-----APKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYL 343
           PA+S +   F+GL+++  F     A K+ + L  SNG +VS M VW P   KKFETLSYL
Sbjct: 17  PAQSNMVAPFNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYL 75

Query: 342 PPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 163
           PPLS E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC D
Sbjct: 76  PPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTD 135

Query: 162 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           A+ V+ E+ E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 136 ASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 157
Score (bit) 295.0
E-value 1.0e-78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921757|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_G10.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   295   1e-78
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   204   3e-51
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   204   3e-51
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   201   2e-50
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   200   4e-50
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   199   5e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   197   3e-49
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   190   3e-47
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   190   3e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   190   4e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   187   2e-46
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   187   3e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   186   4e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   186   8e-46
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   186   8e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   185   1e-45
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   185   1e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   185   1e-45
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   184   2e-45
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   183   5e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   8e-45
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   8e-45
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   182   8e-45
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   181   1e-44
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   180   3e-44
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   180   4e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  295 bits (754), Expect = 1e-78
 Identities = 137/157 (87%), Positives = 149/157 (94%)
 Frame = -3

Query: 507 APAESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 328
           A AESLSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL++
Sbjct: 17  AAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTN 76

Query: 327 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 148
           +QIAKQV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VL
Sbjct: 77  DQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVL 136

Query: 147 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           REIAECAKEYP AFIRVLGFDAKRQVQV+GFL++KPS
Sbjct: 137 REIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  204 bits (518), Expect = 3e-51
 Identities = 95/161 (59%), Positives = 122/161 (75%), Gaps = 4/161 (2%)
 Frame = -3

Query: 507 APAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLS 331
           AP+ES S K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+
Sbjct: 54  APSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLT 113

Query: 330 SEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDA 160
            +QIAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+
Sbjct: 114 DDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDS 173

Query: 159 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           + VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFL+ +P+
Sbjct: 174 SQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  204 bits (518), Expect = 3e-51
 Identities = 96/161 (59%), Positives = 120/161 (74%), Gaps = 3/161 (1%)
 Frame = -3

Query: 510 CAPAESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLS 331
           C  + S+ K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+
Sbjct: 20  CRESSSV-KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLT 78

Query: 330 SEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDA 160
            +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+
Sbjct: 79  DDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDS 138

Query: 159 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           A VLREI EC + +P  ++RVLGFD+K+QVQ+ GFL+ +P+
Sbjct: 139 AQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  201 bits (510), Expect = 2e-50
 Identities = 95/161 (59%), Positives = 119/161 (73%), Gaps = 3/161 (1%)
 Frame = -3

Query: 510 CAPAESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLS 331
           C  + S+ K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+
Sbjct: 20  CRESSSV-KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLT 78

Query: 330 SEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDA 160
            +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+
Sbjct: 79  DDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDS 138

Query: 159 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           A VLREI EC + +P  ++RVLGFD+K+QVQ+ GFL+ +P+
Sbjct: 139 AQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  200 bits (508), Expect = 4e-50
 Identities = 95/161 (59%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
 Frame = -3

Query: 507 APAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLS 331
           A  ES S K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS
Sbjct: 24  ASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLS 83

Query: 330 SEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDA 160
            +QIA+QVD+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D+
Sbjct: 84  DDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDS 143

Query: 159 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           + VLREI EC   YP  ++RVLGFD+K+QVQ+ GFL+ +P+
Sbjct: 144 SQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  199 bits (507), Expect = 5e-50
 Identities = 91/153 (59%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = -3

Query: 486 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 307
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 306 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 136
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 135 ECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           EC  ++P  ++RVLGFD+K+QVQ+ GFL+ +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  197 bits (500), Expect = 3e-49
 Identities = 88/153 (57%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = -3

Query: 486 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 307
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 306 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 136
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 135 ECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           EC  ++P  ++RVLGFD+K+QVQ+ GFL+ +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  191 bits (485), Expect = 2e-47
 Identities = 90/162 (55%), Positives = 114/162 (70%), Gaps = 5/162 (3%)
 Frame = -3

Query: 507 APAESLS-----KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYL 343
           +PA S S     K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYL
Sbjct: 20  SPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYL 79

Query: 342 PPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 163
           PPLS + IAKQV++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD
Sbjct: 80  PPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQD 139

Query: 162 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           +A VLREI EC K +P  F+RVLGFD  +QVQ+ GFL+ +P+
Sbjct: 140 SAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 3e-47
 Identities = 90/156 (57%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
 Frame = -3

Query: 501 AESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 325
           +ES S K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS +
Sbjct: 26  SESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDD 85

Query: 324 QIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 145
            IAKQVD+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLR
Sbjct: 86  AIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLR 145

Query: 144 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           EI EC K +P  F+RVLGFD  +QVQ+ GFL+ +P+
Sbjct: 146 EIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 3e-47
 Identities = 90/156 (57%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
 Frame = -3

Query: 501 AESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 325
           +ES S K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS +
Sbjct: 26  SESTSVKAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDD 85

Query: 324 QIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 145
            IAKQV++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLR
Sbjct: 86  AIAKQVEYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLR 145

Query: 144 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLIQKPS 37
           EI EC K +P  F+RVLGFD  +QVQ+ GFL+ +P+
Sbjct: 146 EIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181