BP921761
Clone id YMU001_000153_H02
Library
Length 375
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TACTCGTGGAGTATTGTCATGAGCAGCGCATCGACTCCGGTAGCCTTGATCAGCGAAAGA
AAGTATGTCTTGCTCTGGATGAATGCGTAAATGACCGGGGCTGGGGCTGGTCCTGACTCC
GACCCCGTTGGCAACAGAATATGCTATGCTGACCACACTGATGTGAAGGGGACTGTAATT
TCGCTTACAACCGTCGCGGTAAAGACTGACTGTCTACCCTACGACTCATCGTGACCTTAA
TTGTACATGAGAAATCCCTCCTTGCTGGCTGTCCAGAGGTTGGTAAGGGTCGTGGAGAGA
GAAGTACCATTGGTGATTGCCTTGAACTTTGCAATGTCAAAGTAGTCGAGAAGGACATGG
TAGCTTATGATATCG
■■Homology search results ■■ -
sp_hit_id A7IGT0
Definition sp|A7IGT0|ATP6_XANP2 ATP synthase subunit a OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Align length 69
Score (bit) 33.9
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921761|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_H02.
(375 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A7IGT0|ATP6_XANP2 ATP synthase subunit a OS=Xanthobacter auto... 34 0.26
sp|A8HT64|ATP6_AZOC5 ATP synthase subunit a OS=Azorhizobium caul... 30 2.8
sp|P27408|POLG_FCVF4 Genome polyprotein OS=Feline calicivirus (s... 29 6.3
sp|P05317|RLA0_YEAST 60S acidic ribosomal protein P0 OS=Saccharo... 29 8.3

>sp|A7IGT0|ATP6_XANP2 ATP synthase subunit a OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpB PE=3
SV=1
Length = 250

Score = 33.9 bits (76), Expect = 0.26
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -2

Query: 209 SVFTATVVSEIT--VPFTSVWSA*HILLPTGSESGPAPAPVIYAFIQSKTYFLSLIKATG 36
S+FT +VS + +P+T +A H+++ ++Y F++ T+FL L +G
Sbjct: 91 SLFTFVLVSNVVGLIPYTFTVTA-HLIVTAAMALLVIGTVIVYGFVRHGTHFLHLFVPSG 149

Query: 35 VDALLMTIL 9
V A L+ L
Sbjct: 150 VPAFLLPFL 158


>sp|A8HT64|ATP6_AZOC5 ATP synthase subunit a OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=atpB PE=3 SV=1
Length = 250

Score = 30.4 bits (67), Expect = 2.8
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -2

Query: 206 VFTATVVSEITVPFTSVWSA*HILLPTGSESGPAPAPVIYAFIQSKTYFLSLIKATGVDA 27
VF A V+ VP+T +A HI++ VIY F + T+FL L +GV A
Sbjct: 96 VFVANVIG--LVPYTFTITA-HIVVTAALALLVIGTVVIYGFYKHGTHFLHLFVPSGVPA 152

Query: 26 LLMTIL 9
L+ +
Sbjct: 153 FLLPFI 158


>sp|P27408|POLG_FCVF4 Genome polyprotein OS=Feline calicivirus
(strain Japanese F4) GN=ORF1 PE=1 SV=2
Length = 1763

Score = 29.3 bits (64), Expect = 6.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3

Query: 262 RRDFSCTIKVTMSRRVDSQSLPRRL*AKLQSPS-HQCGQHSIFCCQRGRSQDQPQPRSFT 86
R+DF ++KVT++RR D Q L +L +++ + C + + C S D P S T
Sbjct: 15 RKDFVHSVKVTLARRRDLQYLYNKLARTMRAEACPSCSSYDV--CPNCTSSDIPDNGSST 72

Query: 85 HS 80
S
Sbjct: 73 TS 74


>sp|P05317|RLA0_YEAST 60S acidic ribosomal protein P0
OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1
Length = 312

Score = 28.9 bits (63), Expect = 8.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1

Query: 162 ISVVSIAYSVANGVGVRTSPSPGHLRIHPEQDILSFA 52
+S VS S++ +G T PS GH I+ +D+L+ A
Sbjct: 214 VSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVA 250


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921761|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_H02.
(375 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******