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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921775
Clone id YMU001_000154_A06
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCAAATTTTTTGCATAGATATTGATTGTGATGACATGCAAGTGAAGGAGCACATCGTTA
TGCTTGAGACACAAGAATCAAAACAAGAGGCAAAGACTCATGGCGACTATGTGAATGAAA
CATTGTTATGCAAGTATGATGTGATTCCGCCCAAACATGACAAGTTTGTGGGGCTAGGAG
GATCAAATCCATTGGCGGACAAGGATATTCTCACTAAGTTCTATAGGATCCCATTATACA
ATGGAAATATCCTTGAGGTGGAAGAAGCGACAAATGATGAGGTGAAGATTCGTAGCGAAG
TGGTGAAAAGAAACAACAAACTTGCTAATTCTAAAGTGGAAGAGGCAAGTGAATTGGTAA
GTGGAGAACTCTTGTATAGATGACTTGAATAAATAAATATAAAAGCTTTGATACATCACC
TAGTAAGTTCTCTAAACTCATACCGTGTTCATGGAAAATGTGCAACATGAAGACTTAGAT
GCAACTACTTCCACCCATGTTTTTGTGGATTA
■■Homology search results ■■ -
sp_hit_id Q6FW88
Definition sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase OS=Candida glabrata
Align length 123
Score (bit) 33.5
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921775|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_A06.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase OS=Can...    33   0.59 
sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitocho...    30   5.0  
sp|Q6CVF7|PMIP_KLULA Mitochondrial intermediate peptidase OS=Klu...    30   5.0  
sp|Q18CF1|RPOB_CLOD6 DNA-directed RNA polymerase subunit beta OS...    30   6.5  
sp|P19584|AMYB_THETU Thermophilic beta-amylase OS=Thermoanaeroba...    30   6.5  
sp|P08586|VH07_VACCW Late protein H7 OS=Vaccinia virus (strain W...    30   8.5  
sp|Q9JFA9|VH07_VACCT Late protein H7 OS=Vaccinia virus (strain T...    30   8.5  
sp|P20539|VH07_VACCC Late protein H7 OS=Vaccinia virus (strain C...    30   8.5  
sp|O57208|VH07_VACCA Late protein H7 OS=Vaccinia virus (strain A...    30   8.5  

>sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase
           OS=Candida glabrata GN=OCT1 PE=3 SV=1
          Length = 761

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
 Frame = +3

Query: 3   QIFCIDIDCDDMQVKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFVGLGG 182
           +I   D +   + +K  I     + S+Q +    +++N T     + I  K D+ +   G
Sbjct: 189 EILLDDFEKSGIYMKAGIREQFIELSQQISVIGQEFINNTDYVAKEFIKVKRDE-MDKSG 247

Query: 183 SNPLA----DKDILTKFYRIPLYNGNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEAS 350
            +PL     ++D+  K+Y+IP Y    L++ ++  DE  IR EV    +    ++++  +
Sbjct: 248 ISPLLTARLNRDLTGKYYKIPTYGQIPLQILKSCPDE-DIRKEVWAALHNCPKAQIQRLN 306

Query: 351 ELV 359
           +LV
Sbjct: 307 QLV 309


>sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3,
           mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2
           SV=2
          Length = 430

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
 Frame = +3

Query: 96  THGDYVNETLLCKYDVIPPKHDKFVGLGGSNPLADKDILTKFYRIPLYN----GNILEVE 263
           +H   +++TLL   + +  K   F G GG   +       KFY     N    G I + E
Sbjct: 232 SHSLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGE 291

Query: 264 EATNDEVKIRSEVVKRNNKLANSKVEEASELVSGELLYR*LE*INIKALIHHLVSSLNSY 443
           E T  +V ++  +VK  NKLA        EL  G+ + +  E I++      +  +   Y
Sbjct: 292 ETTGSQVSVK--IVK--NKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFY 347

Query: 444 RVHGK 458
            ++GK
Sbjct: 348 NLNGK 352


>sp|Q6CVF7|PMIP_KLULA Mitochondrial intermediate peptidase
           OS=Kluyveromyces lactis GN=OCT1 PE=3 SV=1
          Length = 779

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 201 KDILTKFYRIPLYNGNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEASELVSGELLYR 380
           KDI  ++Y++P Y      +    +DEV IR ++    +  +++++E  ++L+S      
Sbjct: 269 KDITGEYYKVPTYGYIPHTLLRTCSDEV-IRMKIWTEMHSCSDAQIERLTKLIS------ 321

Query: 381 *LE*INIKALIHHLVSSLN--SYRVHGKCA 464
                 ++  +  L+ S N   Y++HGK A
Sbjct: 322 ------LRVELAKLLGSQNFAQYQLHGKMA 345


>sp|Q18CF1|RPOB_CLOD6 DNA-directed RNA polymerase subunit beta
           OS=Clostridium difficile (strain 630) GN=rpoB PE=3 SV=1
          Length = 1238

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
 Frame = +3

Query: 15  IDIDCDDMQVKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFVGLGGSNPL 194
           ID D DD+ +KE  V   T +   +  +  + + E +  +   + PKH           L
Sbjct: 349 IDFDIDDLNIKEK-VHYPTLKEILDGYSDEEEIKEAIKSRIKELIPKH----------IL 397

Query: 195 ADKDILTKFYRIPL-YN-GNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEASELVSGE 368
            D  I +  Y   + YN GNI +++   N  ++   E+++   ++  S++E    ++   
Sbjct: 398 LDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGLSRME---RVIKER 454

Query: 369 LLYR*LE*INIKALIH 416
           +  + +E I  +AL++
Sbjct: 455 MTVQDMEAITPQALVN 470


>sp|P19584|AMYB_THETU Thermophilic beta-amylase
           OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1
          Length = 551

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = +3

Query: 66  ETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFVGLGGSNPLADKDILTKFY------- 224
           +TQ++ Q     G++ NE +   Y  +   +++F     SN  + KDI+TK Y       
Sbjct: 135 DTQDNMQYKDEAGNWDNEAVSPWYSGLTQLYNEFYSSFASNFSSYKDIITKIYISGGPSG 194

Query: 225 --RIPLYN 242
             R P YN
Sbjct: 195 ELRYPSYN 202


>sp|P08586|VH07_VACCW Late protein H7 OS=Vaccinia virus (strain
           Western Reserve) GN=VACWR105 PE=3 SV=2
          Length = 146

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 9   FCIDIDCDDMQVKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFV 170
           F ID + D+ +  +++ +  T  S  E KTH   + E L C  D+I     +++
Sbjct: 49  FMIDFEYDNYKASQYLDLTLTPISGDECKTHASSIAEQLAC-VDIIKEDISEYI 101


>sp|Q9JFA9|VH07_VACCT Late protein H7 OS=Vaccinia virus (strain Tian
           Tan) GN=TH8R PE=3 SV=1
          Length = 146

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 9   FCIDIDCDDMQVKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFV 170
           F ID + D+ +  +++ +  T  S  E KTH   + E L C  D+I     +++
Sbjct: 49  FIIDFEYDNYKASQYLDLTLTPISGDECKTHASSIAEQLAC-VDIIKEDISEYI 101


>sp|P20539|VH07_VACCC Late protein H7 OS=Vaccinia virus (strain
           Copenhagen) GN=H7R PE=3 SV=1
          Length = 146

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 9   FCIDIDCDDMQVKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFV 170
           F ID + D+ +  +++ +  T  S  E KTH   + E L C  D+I     +++
Sbjct: 49  FMIDFEYDNYKASQYLDLTLTPISGDECKTHASSIAEQLACA-DIIKEDISEYI 101


>sp|O57208|VH07_VACCA Late protein H7 OS=Vaccinia virus (strain
           Ankara) GN=MVA097R PE=3 SV=1
          Length = 146

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 9   FCIDIDCDDMQVKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFV 170
           F ID + D+ +  +++ +  T  S  E KTH   + E L C  D+I     +++
Sbjct: 49  FMIDFEYDNYKASQYLDLTLTPISGDECKTHASSIAEQLAC-VDIIKEDISEYI 101
tr_hit_id A0BP00
Definition tr|A0BP00|A0BP00_PARTE Chromosome undetermined scaffold_119, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 111
Score (bit) 37.4
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921775|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_A06.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0BP00|A0BP00_PARTE Chromosome undetermined scaffold_119, who...    37   0.43 
tr|Q8I552|Q8I552_PLAF7 Putative uncharacterized protein OS=Plasm...    36   1.3  
tr|A0Y2V4|A0Y2V4_9GAMM Putative long-chain-fatty-acid-CoA ligase...    34   3.7  
tr|B3RL57|B3RL57_TRIAD Predicted protein OS=Trichoplax adhaerens...    34   3.7  
tr|A2FI83|A2FI83_TRIVA EF hand family protein OS=Trichomonas vag...    34   3.7  
tr|Q6GNX8|Q6GNX8_XENLA MGC80802 protein OS=Xenopus laevis GN=MGC...    33   8.1  
tr|A2ERS9|A2ERS9_TRIVA Putative uncharacterized protein OS=Trich...    33   8.1  

>tr|A0BP00|A0BP00_PARTE Chromosome undetermined scaffold_119, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00030906001 PE=4 SV=1
          Length = 1196

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 30/111 (27%), Positives = 49/111 (44%)
 Frame = +3

Query: 42   VKEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHDKFVGLGGSNPLADKDILTKF 221
            VKE ++ +E  +   E K   DY + T++     I P H  F        L  K++  + 
Sbjct: 888  VKESLLKIEAAQLIGEIKIDSDYYSNTIV----KIKPNHYHFYQFNTFRTLKVKELKIQD 943

Query: 222  YRIPLYNGNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEASELVSGELL 374
             R+ ++N   + VEE  N E  +  E+V         ++E  S  + GELL
Sbjct: 944  DRLIIFNTFAINVEEYLNREYFMNKELV---------EIEVLSTSLEGELL 985


>tr|Q8I552|Q8I552_PLAF7 Putative uncharacterized protein OS=Plasmodium
            falciparum (isolate 3D7) GN=PFL1795c PE=4 SV=1
          Length = 2792

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
 Frame = +3

Query: 45   KEHIVMLETQESKQEAKTHGDYVNETLLCKYDVIPPKHD---KFVGLGGSNPLADKDILT 215
            K+H++  E    KQ     G   N+  + KYD I  K+D   K+  +   + +   D + 
Sbjct: 1465 KKHVLHREGITMKQNENIVGSVSNDDTINKYDTI-NKYDTINKYDTINKYDNINKYDNIN 1523

Query: 216  KFYRIPLYNGNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEASELVSGELLYR*LE*I 395
            K+  I   N NI +     N+    + +++ R+  L + K        S E+  R LE I
Sbjct: 1524 KYDNICNNNNNIDKYNNVHNNNFDNKKDLISRSPYLNDEKNTNNLAKESNEI--RILEDI 1581

Query: 396  NIKALIHHLV----SSLNSYRVHGKC 461
             IK +I  L+     ++NS+ +   C
Sbjct: 1582 LIKEIIKRLIFFKNMNINSFCISISC 1607


>tr|A0Y2V4|A0Y2V4_9GAMM Putative long-chain-fatty-acid-CoA ligase
           OS=Alteromonadales bacterium TW-7 GN=ATW7_01015 PE=3
           SV=1
          Length = 492

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
 Frame = +3

Query: 147 PPKHDKFVGLGGSNPLADKDILT-KFYRIPLYNG-------NILEVEEATNDEVKIRSEV 302
           PPK  KF+ +GG+  ++D  ILT + Y +P+Y G       +++ +    +D++    EV
Sbjct: 260 PPKSLKFIAVGGAR-VSDSLILTAREYNLPVYQGYGLSEAASVVSLNTPNDDDINSAGEV 318

Query: 303 VKRNNKLANSKVEEASELVSGEL 371
           +        +KVE     + G L
Sbjct: 319 LGH----VETKVENGELFIKGSL 337


>tr|B3RL57|B3RL57_TRIAD Predicted protein OS=Trichoplax adhaerens
            GN=TRIADDRAFT_51886 PE=4 SV=1
          Length = 1467

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -1

Query: 413  YQSFYIYLFKSSIQEFSTYQFTCLFHFRIS---KFVVSFHHFATNLHLIICRFFHLKDIS 243
            +Q+  +    +S+Q+F +  F C   F IS   K + S     ++  L+ICR+F +++I 
Sbjct: 901  HQNILLLASDNSLQDFKSLYFICGDDFDISHNKKLIKSMPGLTSDAMLVICRYFKIREIK 960

Query: 242  I 240
            +
Sbjct: 961  L 961


>tr|A2FI83|A2FI83_TRIVA EF hand family protein OS=Trichomonas
           vaginalis G3 GN=TVAG_425490 PE=4 SV=1
          Length = 177

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +3

Query: 192 LADKDILTKFYRIPLYNGNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEASELVSGEL 371
           L  KD + K  +I L N N++E EEA             + N LAN  ++E S   SGEL
Sbjct: 103 LVSKDEILKVLKISLRNNNLIEFEEA-------------KINLLANQLIKEYSRNNSGEL 149

Query: 372 LY 377
            Y
Sbjct: 150 RY 151


>tr|Q6GNX8|Q6GNX8_XENLA MGC80802 protein OS=Xenopus laevis
           GN=MGC80802 PE=2 SV=1
          Length = 364

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = +3

Query: 201 KDILTKFYRIPLYNGNILEVEEATNDEVKIRSEVVKRNNKLANSKVEEASELVSGELLYR 380
           KDI +    + L N  I E++E     +K    ++  NNK+ +      + L   E LY 
Sbjct: 82  KDIPSDTTLLDLQNNKITEIKEGDFKNLKSLHALILVNNKIKSISPSAFASLTKLERLY- 140

Query: 381 *LE*INIKALIHHLVSSLNSYRVHGKCAT 467
            L   N+K L  ++  SL   RVH    T
Sbjct: 141 -LSKNNLKDLPTNMPKSLQELRVHENSIT 168


>tr|A2ERS9|A2ERS9_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_227770 PE=4 SV=1
          Length = 797

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +3

Query: 108 YVNETLLCKYDVIPPKHDKFVGLGGSNPLADKDILTKFYRIPLYNGNILEVEEATNDEVK 287
           Y++++      ++ P +D  V    S  L  + ++ + Y + L   N   +EE    E+ 
Sbjct: 292 YLDDSESVPITIVQPIYDFLVITSQSKDLNTRALVLETYSL-LAAVNTDVLEETFEQELD 350

Query: 288 IRSEVVKRNNKLANSKV 338
           + SE++K NN + NSK+
Sbjct: 351 VASELIKSNNSMFNSKI 367