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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921776
Clone id YMU001_000154_A07
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTGCAAGTGAAGACATGGAAAGCATCAAGGAGCGCTATAAAGCAGGCATTGCAGCGAGC
CGAAATGGCTGAAGCAGCCAAATCGGCTGTTGAGAATGAAATGAAGAGATTGAGGGAGAG
AGAACAAAAGCGAAAGGAGACACCTACAGCCTCTCAGCAGCTTTATGTCAGGAGTGTGAA
TGATGGTGGACAATCTGTAACGGTTTCGAAATTGCCAGAGCCTATAAGAAATGCGGCTAG
TTTGCTTGCAGAAGAGGGTTTAAAACCACATAACAAGGCAGATAACTTGAAGAAAAAGCC
CCTGCTTGGCTCACTAGGATCCTATTTATCGAAGAGGAGTAGTTTTTCTGGCAAATCAGC
GTGATCACTTCACTTTGACTATGGCTTGCGGTTTTACGAACAAAGGGCGAGATACGGGTA
TTCTACAGTGTATTTTAGTTGTCTCTTGGGTATACAAACTGATCTTTGAATTTGTATACC
ATTGTGTTACCTAACTGTCGGTAGTAGTACACCTGTATGAATAAAACAAT
■■Homology search results ■■ -
sp_hit_id Q01960
Definition sp|Q01960|FLHF_BACSU Flagellar biosynthesis protein flhF OS=Bacillus subtilis
Align length 33
Score (bit) 29.6
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921776|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_A07.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01960|FLHF_BACSU Flagellar biosynthesis protein flhF OS=Baci...    30   9.4  

>sp|Q01960|FLHF_BACSU Flagellar biosynthesis protein flhF
           OS=Bacillus subtilis GN=flhF PE=1 SV=1
          Length = 366

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 185 GGQSVTVSKLPEPIRNAASLLAEEGLKPHNKAD 283
           G  S   S LPEP+R A  LL E G+K   K +
Sbjct: 99  GDFSAYQSVLPEPLRKAEKLLQETGIKESTKTN 131
tr_hit_id Q13JL1
Definition tr|Q13JL1|Q13JL1_BURXL Glucose-6-phosphate 1-dehydrogenase OS=Burkholderia xenovorans (strain LB400)
Align length 29
Score (bit) 33.5
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921776|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_A07.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q13JL1|Q13JL1_BURXL Glucose-6-phosphate 1-dehydrogenase OS=Bu...    33   6.9  
tr|B2TA83|B2TA83_BURPP Glucose-6-phosphate 1-dehydrogenase OS=Bu...    33   6.9  
tr|Q7MA91|Q7MA91_WOLSU PUTATIVE C4-DICARBOXYLATE TRANSPORT PROTE...    33   9.0  

>tr|Q13JL1|Q13JL1_BURXL Glucose-6-phosphate 1-dehydrogenase
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_B2760
           PE=3 SV=1
          Length = 535

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 374 FDYGLRFYEQRARYGYSTVYFSCLLGIQT 460
           FDYG  F+ +RA  GY T+ + C+LG +T
Sbjct: 444 FDYG-DFFAERANVGYETLLYDCMLGDET 471


>tr|B2TA83|B2TA83_BURPP Glucose-6-phosphate 1-dehydrogenase
           OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
           GN=Bphyt_7097 PE=4 SV=1
          Length = 535

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 374 FDYGLRFYEQRARYGYSTVYFSCLLGIQT 460
           FDYG  F+ +RA  GY T+ + C+LG +T
Sbjct: 444 FDYG-DFFAERANVGYETLLYDCMLGDET 471


>tr|Q7MA91|Q7MA91_WOLSU PUTATIVE C4-DICARBOXYLATE TRANSPORT PROTEIN
           , OS=Wolinella succinogenes GN=DCTA PE=4 SV=1
          Length = 443

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 318 PSEPSRGFFFKLSALLCGFKPSSASKLAAFLIGSGNFETVTD 193
           P E ++ FFFK+  +L  F P +A    AFLIG   F ++ +
Sbjct: 196 PIEIAQNFFFKILTVLMLFSPVAAFSAMAFLIGKFGFSSLVN 237