NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921780
Clone id YMU001_000154_A11
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCAAGCAATTGACTCATTACACATTGTATAACTGCAATAACCATCTCTGTTTGGATGTGT
ATAAATAACTAGCCTTCAAACACTCACATGAATCTTAAAATTAACTATTCTGTTATAAGA
GGAGCCCGTCTTTCGCATTTCTAGGTTGTCTCTGACACTTATCTTACACTATCGAAGGGA
AAATTCCTCAAGTTTACAAAACTGGGCCAAATACTAATGCTTCCAACCTTGTCATCTGAA
AAATCAACCTCACGTCAAAATTTGTTGACTAGGATCCCGCAGCCGGGTTTTAACATAATG
CTGGTATCAACTTGCTTCCATGGTTTGGTGAGTTTATCTGTTGAGTTGAAATCACCCAGG
GATATCATTGCCTTCCACTTGCCAACAATGTTCCCTCCTTCCTCCAAGCTTCACTCTTCT
GCTGGCAATTATTGGTATAAAACAATGCTAATCATCTTTACATCTCCAACACCATCCTCA
AAACAAGTAGGCTCTACATCTTGCCCAATCTCCACCATA
■■Homology search results ■■ -
sp_hit_id O85293
Definition sp|O85293|ILVI_BUCAP Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum
Align length 88
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921780|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_A11.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O85293|ILVI_BUCAP Acetolactate synthase large subunit OS=Buch...    32   1.8  
sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus ...    32   1.8  
sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=...    32   1.8  
sp|P53681|CRK_DAUCA CDPK-related protein kinase OS=Daucus carota...    32   2.4  
sp|Q6BYP2|RT106_DEBHA Histone chaperone RTT106 OS=Debaryomyces h...    31   4.0  
sp|Q6CEJ6|CCR4_YARLI Glucose-repressible alcohol dehydrogenase t...    30   6.9  

>sp|O85293|ILVI_BUCAP Acetolactate synthase large subunit
           OS=Buchnera aphidicola subsp. Schizaphis graminum
           GN=ilvI PE=3 SV=1
          Length = 571

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
 Frame = -2

Query: 500 DVEPTCFEDGV-------GDVKMISIVLYQ*LPAEE*--SLEEGGNIVGKWKAMISLGDF 348
           D++PT     V       GD K +   + + +  E+   SL+E  + +GKWK + SL ++
Sbjct: 304 DIDPTSISKTVSADIPIVGDAKQVLKEMIELIKKEKQIHSLKEWWSSIGKWKKIKSL-EY 362

Query: 347 NSTDKLTKPWKQVDTSIMLKPGCGILVN 264
           N      KP K + T   L  G   + +
Sbjct: 363 NKKSNKIKPQKIIQTLFKLTKGTSYITS 390


>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus
           gallus GN=NHLRC2 PE=2 SV=1
          Length = 727

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
 Frame = +1

Query: 217 MLPTLSSEKSTSRQNL---------LTRIPQPGFNIMLVSTCFHGLVSLSVELKSPRDII 369
           MLP L+ E      NL         L ++P+   NI L S              +P   I
Sbjct: 563 MLPILNPETCDVTDNLSVQKDQIANLPKLPKSAPNIQLPSLS-----------AAPGQTI 611

Query: 370 AFHLPTMFPPSSKLHSSAGNYWYKT 444
            F L    PP SKL+  A N W+ T
Sbjct: 612 QFLLKLTLPPDSKLNEEAPNAWFIT 636


>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5
           OS=Homo sapiens GN=MXRA5 PE=2 SV=2
          Length = 2828

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 238 EKSTSRQNLLTRIPQPGFNIMLVSTCFHG-LVSLSVELKSPRDIIAFHLPTMFPPSSKLH 414
           E+    Q +L +   P ++I L  T  HG +V+L  ++K P D+   HL    PP   ++
Sbjct: 299 EEDGGSQLILEKFQLPQWSISLNMTDEHGNMVNLVCDIKKPMDVYKIHLNQTDPPDIDIN 358

Query: 415 SS 420
           ++
Sbjct: 359 AT 360


>sp|P53681|CRK_DAUCA CDPK-related protein kinase OS=Daucus carota
           GN=CRK PE=2 SV=1
          Length = 602

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +1

Query: 223 PTLSSEKSTSRQNLLTRIPQPGFNIMLVSTCFHGLVSLSVELKSPRDIIAFHLPTMFPPS 402
           P++SSE     + LL + P+    +       H  +  S ++K P DI+ F L  ++  S
Sbjct: 377 PSVSSEAKDFVKRLLNKDPRK--RMTAAQALCHSWIKNSNDIKFPLDILVFKLMKVYMRS 434

Query: 403 SKLHSSAGNYWYKTMLI 453
           S L  +A     KT+ +
Sbjct: 435 SPLRKAALRALSKTLTV 451


>sp|Q6BYP2|RT106_DEBHA Histone chaperone RTT106 OS=Debaryomyces
           hansenii GN=RTT106 PE=3 SV=2
          Length = 482

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 256 QNLLTRIPQPGFNIML---VSTCFHGLVSLSVELKSPRDIIAFHLPTMFPPSSKLHSSAG 426
           Q ++  +PQ  F   +   ++  FH LV      +SP+ +++  LPT + P   +H+ A 
Sbjct: 84  QEIIFELPQISFQSPIRKKLNLIFHLLVEPG---QSPKPVMSLALPTTYVPEISIHNLAS 140

Query: 427 NYWYKTMLIIFTSPTPSSKQ 486
           +     +L I  + T ++K+
Sbjct: 141 SIRLCVLLPILGNSTNNTKR 160


>sp|Q6CEJ6|CCR4_YARLI Glucose-repressible alcohol dehydrogenase
           transcriptional effector OS=Yarrowia lipolytica GN=CCR4
           PE=3 SV=1
          Length = 705

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -1

Query: 201 FCKLEEFSLR*CKISVRDNLEMRKTGSSYNRIVN 100
           FC +E+ SL    +++++N + +KT  +YNR++N
Sbjct: 445 FCLIEKLSLDFSSLALKNN-DFKKTADTYNRVLN 477
tr_hit_id B4JPK5
Definition tr|B4JPK5|B4JPK5_DROGR GH13537 OS=Drosophila grimshawi
Align length 104
Score (bit) 33.5
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921780|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_A11.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4JPK5|B4JPK5_DROGR GH13537 OS=Drosophila grimshawi GN=GH1353...    33   6.5  
tr|B5EPI6|B5EPI6_ACIF5 Endoribonuclease L-PSP OS=Acidithiobacill...    33   8.5  
tr|B7J6K5|B7J6K5_THIFE Dioxygenase, putative OS=Acidithiobacillu...    33   8.5  
tr|B6H2I2|B6H2I2_PENCH Pc13g14600 protein OS=Penicillium chrysog...    33   8.5  
tr|B2VRT4|B2VRT4_PYRTR Putative uncharacterized protein OS=Pyren...    33   8.5  

>tr|B4JPK5|B4JPK5_DROGR GH13537 OS=Drosophila grimshawi GN=GH13537
           PE=4 SV=1
          Length = 957

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 24/104 (23%), Positives = 47/104 (45%)
 Frame = +1

Query: 205 GQILMLPTLSSEKSTSRQNLLTRIPQPGFNIMLVSTCFHGLVSLSVELKSPRDIIAFHLP 384
           G+++   T+ +  S   Q +    P PG      ST  +   + +V + S + + ++H+P
Sbjct: 284 GEVIAAATIGAVASNKSQFINPPPPYPGLGPSTCSTAPNN--NSAVAVPSAKPVQSYHMP 341

Query: 385 TMFPPSSKLHSSAGNYWYKTMLIIFTSPTPSSKQVGSTSCPIST 516
           T  PPSS   +S+ +        +     P++   GS +  IS+
Sbjct: 342 TSTPPSSSSLASSSS------SSLGAGGAPTTTSTGSNNIAISS 379


>tr|B5EPI6|B5EPI6_ACIF5 Endoribonuclease L-PSP OS=Acidithiobacillus
           ferrooxidans (strain ATCC 53993) GN=Lferr_0932 PE=4 SV=1
          Length = 357

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 337 SVELKSPRDIIAFHLPTMFPPSSKLHSSAGNYWYKTMLIIFTSPTPS 477
           SV +++PR I A+H P  + PSS   S AG        I+F S T S
Sbjct: 210 SVAVENPRQISAYHYPQEYGPSSPTFSRAGWVDLGQQKILFISGTAS 256


>tr|B7J6K5|B7J6K5_THIFE Dioxygenase, putative OS=Acidithiobacillus
           ferrooxidans ATCC 23270 GN=AFE_0789 PE=4 SV=1
          Length = 357

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 337 SVELKSPRDIIAFHLPTMFPPSSKLHSSAGNYWYKTMLIIFTSPTPS 477
           SV +++PR I A+H P  + PSS   S AG        I+F S T S
Sbjct: 210 SVAVENPRQISAYHYPQEYGPSSPTFSRAGWVDLGQQKILFISGTAS 256


>tr|B6H2I2|B6H2I2_PENCH Pc13g14600 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g14600 PE=3 SV=1
          Length = 793

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 27/90 (30%), Positives = 42/90 (46%)
 Frame = +1

Query: 244 STSRQNLLTRIPQPGFNIMLVSTCFHGLVSLSVELKSPRDIIAFHLPTMFPPSSKLHSSA 423
           S+S  ++   IP PG + +LVS       S+ V + +P    +  +P+  P S    SS+
Sbjct: 147 SSSMSSVPVSIPTPGSSSILVSVPTQSSSSIPVSVPTP---ASTSVPSSVPVSVHTPSSS 203

Query: 424 GNYWYKTMLIIFTSPTPSSKQVGSTSCPIS 513
                    I  + PTPSS  V  +S P+S
Sbjct: 204 S--------IPVSVPTPSSSSVPFSSVPVS 225


>tr|B2VRT4|B2VRT4_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_00071 PE=4 SV=1
          Length = 468

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +1

Query: 217 MLPTLSSEKSTSR-----QNLLTRIPQPGFNIMLVSTCFHGLVSLSVELKSPRDIIAFHL 381
           ++P+L +  + +R     Q L T +  P  N  L+    H L  ++ + +    I  FHL
Sbjct: 194 VIPSLQASNAKNRILLAKQMLRTWLRSP-LNTRLLKNGLHALGPVAGQFRRSFYIFVFHL 252

Query: 382 PTMFPPSSKLHSSAGNYWYKTML 450
           P    P S + ++ GNYW+  +L
Sbjct: 253 PW---PLSNVFATFGNYWFLRVL 272