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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921784
Clone id YMU001_000154_B04
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGGCTCTGTCGTACATAATGCGAGGGGGTATGGCTATGCTCCGACTGCTGGCCTTTTCC
AGTCTAGTGGTTGGGGGAAGAGCAGGGTGGTATGCGAATTGTGGAAGAAGGATGTATGGG
TTGTTTATTGTTCGTTTGCAGCTGGGACTGGCTATCCCAAGATATCTCCGATAGCGAAAT
GGTTCCATCAGCAAGCTATGAAGCATCTTGGCAGTGATGAGAGCCTACGAGGGCAACTAG
CTTGCATGAATTTTACTTTGGCTTACTTCTGTGCATGCTTGTGTGTGCTGGAAAATAAAG
TGAAGAATAGTGATTGGAATCGTGAAAAGTTTTTGATCGAGACAAGACAAGGCAACAATT
ATTGGGAGGATGTGCAAGAGCAGACCGAGAAATTTCTAGCTGTGCTCAGTCGAAAAGATG
GTTTGACTAAAATTCAGCAAAGCAAGCAGATTACATGGGCCACGTGGGAAACCGAAGCTC
ATACAGAATTTGTGAGATTTTGGCCAAACAGTTTGATGAAGAATGCTCAGAAGCTGGA
■■Homology search results ■■ -
sp_hit_id Q08964
Definition sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex subunit YPL216W OS=Saccharomyces cerevisiae
Align length 60
Score (bit) 34.3
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921784|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_B04.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex...    34   0.39 
sp|P29258|STP2_PIG Nuclear transition protein 2 OS=Sus scrofa GN...    33   0.68 
sp|Q03073|FIXN_BRAJA Cytochrome c oxidase subunit 1 homolog, bac...    32   1.9  
sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcriptio...    31   4.3  
sp|P98056|FIXN_AZOC5 Cytochrome c oxidase subunit 1 homolog OS=A...    31   4.3  
sp|O19084|CDSN_PIG Corneodesmosin (Fragment) OS=Sus scrofa GN=CD...    30   5.7  
sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcriptio...    30   9.7  
sp|Q2JJ73|HRCA_SYNJB Heat-inducible transcription repressor hrcA...    30   9.7  

>sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex
           subunit YPL216W OS=Saccharomyces cerevisiae GN=YPL216W
           PE=1 SV=1
          Length = 1102

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 371
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 709 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 767


>sp|P29258|STP2_PIG Nuclear transition protein 2 OS=Sus scrofa
           GN=TNP2 PE=2 SV=1
          Length = 137

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -2

Query: 288 AHTSMH-RSKPK*NSCKLVALVGSHHCQDAS*LADGTISLSEISWDSQSQLQTNNKQPIH 112
           AHT  H  S P+ ++C   +   SHHCQ+ S   D + S S     SQS    +   P H
Sbjct: 11  AHTQPHSNSGPQSHACNQCSC--SHHCQNCSQSCDRSQSCSRSRSSSQSP-TGHRSLPGH 67

Query: 111 PSSTIRIPPCSSPNH*TGKGQQSEHSH 31
            S +  + P  SP H     +++ HSH
Sbjct: 68  QSQS--LSPSPSPRH----RKRAMHSH 88


>sp|Q03073|FIXN_BRAJA Cytochrome c oxidase subunit 1 homolog,
           bacteroid OS=Bradyrhizobium japonicum GN=fixN PE=2 SV=1
          Length = 549

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = +3

Query: 27  GYGYAPTAGLFQSSGWGKSRVVCELWKKDVWVVYCSFAAGTGYPKISP---IAKWFHQQ- 194
           G GY    G+ QS  + +     +LW   VWVVY      T   +  P   +A WF+   
Sbjct: 181 GTGYL--LGVTQSKEYAEPEWYADLWLTIVWVVYLLVFLATIIKRKEPHIFVANWFYLAF 238

Query: 195 ----AMKHLGSDESL 227
               A+ HLG++ +L
Sbjct: 239 IVTIAVLHLGNNPAL 253


>sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcription
           subunit 28 OS=Drosophila melanogaster GN=MED28 PE=1 SV=1
          Length = 189

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +3

Query: 207 LGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNNYWEDVQEQT 386
           + S+ES  G L  M+     F +CL  L  +  NS  N+E+  +E ++  N + DV  Q 
Sbjct: 1   MASNESGGGNL--MDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQM 58

Query: 387 EKF 395
           E F
Sbjct: 59  EAF 61


>sp|P98056|FIXN_AZOC5 Cytochrome c oxidase subunit 1 homolog
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=fixN PE=3 SV=1
          Length = 551

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = +3

Query: 27  GYGYAPTAGLFQSSGWGKSRVVCELWKKDVWVVYCSFAAGTGYPKISP---IAKWFHQQ- 194
           G GY    G+ Q   + +     +LW   VWV Y     GT   +  P   +A WF+   
Sbjct: 182 GTGYL--LGITQGKEYAEPEWYADLWLTIVWVTYFLVFLGTVLKRKEPHIYVANWFYLAF 239

Query: 195 ----AMKHLGSDESL 227
               A+ HLG++ ++
Sbjct: 240 ILTIAVLHLGNNAAI 254


>sp|O19084|CDSN_PIG Corneodesmosin (Fragment) OS=Sus scrofa GN=CDSN
           PE=3 SV=1
          Length = 225

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -2

Query: 225 GSHHCQDAS*LADGTISLSEISWDSQSQLQTNNKQPIHPSSTIRIPPCSSPNH*TGKGQQ 46
           G   C   S  + G  SLS     S S + +++    HP  T+   PCS P   +  G  
Sbjct: 105 GVQPCGVGSSGSKGPCSLSGSGVHSSSSISSSSGSSFHPCGTVSQGPCSPPGTGSFSGSS 164

Query: 45  SEHS 34
           S  S
Sbjct: 165 SSKS 168


>sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcription
           subunit 28 OS=Drosophila pseudoobscura pseudoobscura
           GN=MED28 PE=3 SV=1
          Length = 190

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 267 FCACLCVLENKVKNSDWNREKFLIETRQGNNYWEDVQEQTEKF 395
           F +CL  L  +  NS  N+E+  +E ++  N + DV  Q E F
Sbjct: 19  FQSCLLSLTKQEPNSGTNKEEIELEVQKTTNRFIDVARQMEAF 61


>sp|Q2JJ73|HRCA_SYNJB Heat-inducible transcription repressor hrcA
           OS=Synechococcus sp. GN=hrcA PE=3 SV=1
          Length = 389

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 104 PQFAYHPALPPTTRLEKASSRSIAIPPRIMY 12
           PQ AY P LP +T +++ S +S    P I+Y
Sbjct: 300 PQLAYLPPLPSSTEMDQESGQSARKTPVIIY 330
tr_hit_id B8P9W0
Definition tr|B8P9W0|B8P9W0_9APHY Predicted protein OS=Postia placenta Mad-698-R
Align length 51
Score (bit) 35.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921784|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_B04.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8P9W0|B8P9W0_9APHY Predicted protein OS=Postia placenta Mad-...    35   2.5  
tr|B5VSW5|B5VSW5_YEAS6 YPL216Wp-like protein OS=Saccharomyces ce...    34   4.2  
tr|B3LKL4|B3LKL4_YEAS1 Putative uncharacterized protein OS=Sacch...    34   4.2  
tr|A6ZW39|A6ZW39_YEAS7 Conserved protein OS=Saccharomyces cerevi...    34   4.2  
tr|A8P9F0|A8P9F0_COPC7 Putative uncharacterized protein OS=Copri...    34   5.5  
tr|A2WJA9|A2WJA9_9BURK Mn2+ and Fe2+ transporter OS=Burkholderia...    34   5.6  
tr|B0CV30|B0CV30_LACBS Predicted protein OS=Laccaria bicolor (st...    33   7.3  
tr|Q8HMI7|Q8HMI7_9TELE NADH dehydrogenase subunit 4L OS=Carapus ...    33   9.3  
tr|Q4KPB4|Q4KPB4_9CONI NEEDLY-like protein (Fragment) OS=Podocar...    33   9.5  

>tr|B8P9W0|B8P9W0_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_104209 PE=4 SV=1
          Length = 500

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 12  VHNARGYG-YAPTAGLFQSSGWGKSRVVCELWKKDVWVVYCSF-AAGTGYP 158
           ++++RG   YA +  L QSSG GKSR V EL  KD++V+  +     TGYP
Sbjct: 238 INSSRGMNPYANSMPLLQSSGMGKSRTVDEL-AKDIFVIPLNVRREATGYP 287


>tr|B5VSW5|B5VSW5_YEAS6 YPL216Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_160550 PE=4
           SV=1
          Length = 932

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 371
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 539 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 597


>tr|B3LKL4|B3LKL4_YEAS1 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_02283 PE=4 SV=1
          Length = 1099

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 371
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 706 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 764


>tr|A6ZW39|A6ZW39_YEAS7 Conserved protein OS=Saccharomyces
           cerevisiae (strain YJM789) GN=SCY_5516 PE=4 SV=1
          Length = 1099

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 371
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 706 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 764


>tr|A8P9F0|A8P9F0_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_09661 PE=4 SV=1
          Length = 530

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
 Frame = +3

Query: 78  KSRVVCELWKKDVWVVYCSFAAGTGYPKISPIAKWFHQQAMKHLGSDESLRGQLACMNFT 257
           K + V E W +D +     F AG GY + +     F    ++H  S   L G ++C+   
Sbjct: 279 KLQAVLEKWARDGFPKKEIFHAGKGYHRSAANPPPFFAYILQHTYSQRDLAGGMSCLKGQ 338

Query: 258 LAYFCACLCVLENKV------KNSDWNREKFLIETRQGNNYWEDVQEQTEK 392
            A+  A L  L N++       N D        +  +   YW  ++++ E+
Sbjct: 339 DAHKIALLLSLANELGFKLAFANLDIKVRGLADDYERYQVYWGKIRQEKER 389


>tr|A2WJA9|A2WJA9_9BURK Mn2+ and Fe2+ transporter OS=Burkholderia
           dolosa AUO158 GN=BDAG_04913 PE=4 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 4   ALSYIMRGGMAMLRLLAFSSLVVGGRAGWYANCGRRMYGLFIVRLQLGLAIPRYLR 171
           AL  ++  G  +  +   ++LVVGGR+ WYA     +YG+  + LQ+ L+  RY R
Sbjct: 162 ALVNVVNVGADLAAMGDATALVVGGRSYWYA----PVYGIVSLALQMTLSYERYSR 213


>tr|B0CV30|B0CV30_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_292492 PE=4 SV=1
          Length = 908

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
 Frame = -2

Query: 189 DGTISLSEISWDSQSQLQTNNKQPIHPSSTIRIPPCSSPNH*TGKG-------------- 52
           DG  S   ++ D+++  Q+NN  P H   + R+PP + P   +                 
Sbjct: 364 DGVASSPPLAADTKAHTQSNNLLPSHGEPSSRLPPSTIPKTPSANSISPSITDTQNEPFT 423

Query: 51  QQSEHSHTPSH 19
             S H H PSH
Sbjct: 424 SASNHDHQPSH 434


>tr|Q8HMI7|Q8HMI7_9TELE NADH dehydrogenase subunit 4L OS=Carapus
           bermudensis GN=ND4L PE=4 SV=1
          Length = 98

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 389 LGLLLHILPIIVALSCLDQKLFTIPITILHFIFQHTQA 276
           LGL LH + +I AL CL+  + T+ +T+  +  +HT A
Sbjct: 17  LGLALHRVHLISALLCLEAMMLTLYVTLSVWALEHTSA 54


>tr|Q4KPB4|Q4KPB4_9CONI NEEDLY-like protein (Fragment) OS=Podocarpus
           matudae var. reichei PE=2 SV=1
          Length = 295

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = -2

Query: 396 EISRSALAHPPNNCCLVLSRSKTFHDSNHYSSLYFPAHTSMHRSKPK*NSCKLVALVGSH 217
           E  R  +    N     ++   T  D     +L FP  TS   +    N+CK   ++ +H
Sbjct: 31  EAERKRIQDDQNTFAAAMTSEGTSKDLRANDALIFPESTSAEHAPMNINTCKTGLIIQNH 90

Query: 216 HCQDAS*LADGTISLSEISWDSQSQLQTNNKQ 121
           +  + +    G I + E S +S  +   +NKQ
Sbjct: 91  N--NGNLCGAGLIGIGEHSSESDERKMDSNKQ 120