BP921785
Clone id YMU001_000154_B05
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGGTGAAATAGCTCACCATACGTTGCAGGTTGACGTCATATACAACATACATGATATGGT
ACAAACAATCACCCTACGAGGTTAGTTGCCCTAAGTATTCACCAACCTAAACTAGCCTAA
GACAAATGGATTGGTAAAAGCACAGTTCAAAGGAGATCCCCCGGCTTCTTCATACATGCC
GCTCCACAGAACTCATGGGGTACCTTTGTTTCTTTTGCTGACACCCCTGAAACAGCGTAA
CTTGAATTTGCGGCTGAGACTCTCGAACTTGCACCTCTTCCGTGTACCTATTCCTCGAGT
GTCCAAAATTAGCTTGGTGTTGGCAGAGTCCAATTCCTGAAGAGATGCATCAATGGCCCT
TGATAACATCTTTTCTTCATCCACAGCATTTGAAGGAGCTTCTGCAAAGTGCTCCC
■■Homology search results ■■ -
sp_hit_id Q86SQ0
Definition sp|Q86SQ0|PHLB2_HUMAN Pleckstrin homology-like domain family B member 2 OS=Homo sapiens
Align length 60
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921785|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_B05.
(416 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q86SQ0|PHLB2_HUMAN Pleckstrin homology-like domain family B m... 30 3.8
sp|Q46811|YGFK_ECOLI Uncharacterized protein ygfK OS=Escherichia... 29 6.4
sp|Q8XD75|YGFK_ECO57 Uncharacterized protein ygfK OS=Escherichia... 29 6.4
sp|Q60140|PEL_PSEVI Pectate lyase OS=Pseudomonas viridiflava GN=... 29 6.4
sp|Q9UW13|PALF_CANAL pH-response regulator protein palF/RIM8 OS=... 29 6.4
sp|Q07864|DPOE1_HUMAN DNA polymerase epsilon catalytic subunit A... 29 6.4
sp|Q8K1N2|PHLB2_MOUSE Pleckstrin homology-like domain family B m... 29 8.4
sp|Q09897|CHR3_SCHPO Chitin synthase regulatory factor 3 OS=Schi... 29 8.4

>sp|Q86SQ0|PHLB2_HUMAN Pleckstrin homology-like domain family B member
2 OS=Homo sapiens GN=PHLDB2 PE=1 SV=2
Length = 1253

Score = 30.0 bits (66), Expect = 3.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3

Query: 414 EHFAEAPSNAVDEEKMLSRAIDASLQELDSANTKLILDTRGIGTRKRCKFESLSRKFKLR 235
E EA A++EEK ++ LQE S KLI I R+R + L+R +R
Sbjct: 1057 EREMEAKKRALEEEKRRREILEKRLQEETSQRQKLIEKEVKIRERQRAQARPLTRYLPVR 1116


>sp|Q46811|YGFK_ECOLI Uncharacterized protein ygfK OS=Escherichia
coli (strain K12) GN=ygfK PE=4 SV=1
Length = 1032

Score = 29.3 bits (64), Expect = 6.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2

Query: 328 LCQHQANFGHSRNRYTEEVQVRESQPQIQVTLFQGCQQKKQRY--PMSSVERH 176
+C HQ + +R Y + +RE + +V L +G + KQR+ P S RH
Sbjct: 502 ICDHQCQYNCTRLDYDSALNIRELK---KVALEKGWDEYKQRWHKPAGSGSRH 551


>sp|Q8XD75|YGFK_ECO57 Uncharacterized protein ygfK OS=Escherichia
coli O157:H7 GN=ygfK PE=4 SV=1
Length = 1032

Score = 29.3 bits (64), Expect = 6.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2

Query: 328 LCQHQANFGHSRNRYTEEVQVRESQPQIQVTLFQGCQQKKQRY--PMSSVERH 176
+C HQ + +R Y + +RE + +V L +G + KQR+ P S RH
Sbjct: 502 ICDHQCQYNCTRLDYDSALNIRELK---KVALEKGWDEYKQRWHKPAGSGSRH 551


>sp|Q60140|PEL_PSEVI Pectate lyase OS=Pseudomonas viridiflava GN=pel
PE=3 SV=1
Length = 380

Score = 29.3 bits (64), Expect = 6.4
Identities = 22/83 (26%), Positives = 42/83 (50%)
Frame = -1

Query: 350 MHLFRNWTLPTPS*FWTLEE*VHGRGASSRVSAANSSYAVSGVSAKETKVPHEFCGAACM 171
+HL+ N+ + + S HG G SS++ + +++ +SG+S TK+ ++ G +
Sbjct: 273 VHLYNNYHVGSASHSVYPFSYAHGIGKSSKIFSEKNAFEISGISGC-TKIAGDY-GGSVY 330

Query: 170 KKPGDLL*TVLLPIHLS*ASLGW 102
+ G L L S +S+GW
Sbjct: 331 RDSGSTLNGTALTCTWS-SSIGW 352


>sp|Q9UW13|PALF_CANAL pH-response regulator protein palF/RIM8
OS=Candida albicans GN=RIM8 PE=2 SV=2
Length = 622

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1

Query: 293 E*VHGRGASSRVSAANSSYAVSGVSAKETKVPHEFCGA 180
E V R +SS S +NSS AV S+ + V H++ GA
Sbjct: 459 EEVASRRSSSMASNSNSSPAVFSTSSPHSPVEHQYAGA 496


>sp|Q07864|DPOE1_HUMAN DNA polymerase epsilon catalytic subunit A
OS=Homo sapiens GN=POLE PE=1 SV=5
Length = 2286

Score = 29.3 bits (64), Expect = 6.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -3

Query: 396 PSNAVDEEKMLSRAIDASLQELDSANTKLILDTRG---IGTRKRCKFE---SLSRKFK 241
P+ +DE+K L A+D + D + K+ L + I TRK C+ E LS+KF+
Sbjct: 68 PTEILDEDKRLGSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCEREVSSFLSKKFQ 125


>sp|Q8K1N2|PHLB2_MOUSE Pleckstrin homology-like domain family B member
2 OS=Mus musculus GN=Phldb2 PE=1 SV=2
Length = 1249

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3

Query: 414 EHFAEAPSNAVDEEKMLSRAIDASLQELDSANTKLILDTRGIGTRKRCKFESLSRKFKLR 235
E EA A++EEK ++ LQE S KLI I ++R + L+R +R
Sbjct: 1053 EREMEAKKRALEEEKRRREILEKRLQEETSQRQKLIEKEVKIREKQRAQARPLTRYLPVR 1112


>sp|Q09897|CHR3_SCHPO Chitin synthase regulatory factor 3
OS=Schizosaccharomyces pombe GN=chr3 PE=1 SV=1
Length = 932

Score = 28.9 bits (63), Expect = 8.4
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Frame = +2

Query: 86 LP*VFTNLN*PKTNGLVKAQFKGDP-PASSYMPLHRTHGV-----PLFLLLTPLKQXXXX 247
LP TNL PK + G P S P+H THG+ PL + +P+ +
Sbjct: 409 LPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVHTTHGLVSDIRPLPSVSSPIMRADST 468

Query: 248 XXXXXXXXXXFRVPIPR-------------VSKISLVLAESNS*RDASMALDNIFSSSTA 388
PIP+ V+ +S +A S R+ SM ++ SS
Sbjct: 469 PISHNLAVTPSFSPIPQQSNKSIGNHKNTSVANVSSKVANSKFERNISMMSNSNASSPAI 528

Query: 389 FE-GASAK 409
FE GA AK
Sbjct: 529 FEVGAEAK 536


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921785|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_B05.
(416 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******