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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921798
Clone id YMU001_000154_C06
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTATTGTAAGAGACTGACCAAATGTGTAACAATCTCCTGCAAATAATTTTTCAGGAATC
TGCGGTAAAGAATTTTACTTCATCAAAATGTTCCTGTATGCCTGCTATTTAGCACCTCAA
CTCTTATCATGGGATTTATAATCTCTCCTTTTGTGATGAGAGGAAGAGCCCTTGCAATTG
CAGTTACAGGGAAAGAATGGCCTAGTTTCATTTGTACAAATGGTCTTGGAGCTGGTCCAG
TGCACATTTTCACATCAGTCTGTTCTGTGGAATTTGACGGAATGCCTGGGCCCTGGAATA
TGGGAGCCTTTGTTGCTGGAGCTTTAGGATCTTGTGATGGGCGGTTGGGTTTGCAGATGG
TCTGGATTTAGGCCATGGTTGATGGCAATCCTTTTTATGTGAAGTCTGGATGGCTGCTTA
AGTTATTCAGACTGCTTAAGTTCTTCATTCAGAAGACGTCGATTGACTTTGCTATTAGTA
GCATAGCAAATGAAAGTAGTGGTACAGTTGAAATAAGAGCTTTTTTGTAAACTGACGAT
■■Homology search results ■■ -
sp_hit_id P19551
Definition sp|P19551|ENV_HV1MF Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1 (isolate MFA group M subtype B)
Align length 37
Score (bit) 33.1
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921798|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_C06.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19551|ENV_HV1MF Envelope glycoprotein gp160 OS=Human immunod...    33   0.89 
sp|Q12888|TP53B_HUMAN Tumor suppressor p53-binding protein 1 OS=...    33   1.2  
sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=e...    33   1.2  
sp|P03377|ENV_HV1BR Envelope glycoprotein gp160 OS=Human immunod...    32   2.0  
sp|Q6GX86|CQ053_RAT Uncharacterized protein C17orf53 homolog OS=...    32   2.0  
sp|Q02479|BRLF1_BHV4D Putative transcription activator BRLF1 hom...    32   2.6  
sp|Q0IWF3|NIP31_ORYSJ Aquaporin NIP3-1 OS=Oryza sativa subsp. ja...    31   4.4  
sp|Q32P12|CQ053_MOUSE Uncharacterized protein C17orf53 homolog O...    31   4.4  
sp|Q3J5K7|ISPE_RHOS4 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    30   5.7  
sp|P04624|ENV_HV1H3 Envelope glycoprotein gp160 OS=Human immunod...    30   5.7  
sp|P04578|ENV_HV1H2 Envelope glycoprotein gp160 OS=Human immunod...    30   5.7  
sp|P04582|ENV_HV1B8 Envelope glycoprotein gp160 OS=Human immunod...    30   5.7  
sp|P03375|ENV_HV1B1 Envelope glycoprotein gp160 OS=Human immunod...    30   5.7  
sp|Q28524|ADRB3_MACMU Beta-3 adrenergic receptor OS=Macaca mulat...    30   7.5  
sp|Q9X4Q6|NQRD_VIBCH Na(+)-translocating NADH-quinone reductase ...    30   9.8  
sp|A5F5Y6|NQRD_VIBC3 Na(+)-translocating NADH-quinone reductase ...    30   9.8  
sp|P97820|M4K4_MOUSE Mitogen-activated protein kinase kinase kin...    30   9.8  
sp|A3PGS6|ISPE_RHOS1 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    30   9.8  
sp|Q9JKY5|HIP1R_MOUSE Huntingtin-interacting protein 1-related p...    30   9.8  

>sp|P19551|ENV_HV1MF Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate MFA group M
           subtype B) GN=env PE=1 SV=1
          Length = 853

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 209 HLYKWSWSWSSAHFHISLFCGI*RNAWALEYGSLCCW 319
           HL++W W W      I + C    N W   Y  +  W
Sbjct: 9   HLWRWGWKWGIMLLGILMICSATENLWVTVYYGVPVW 45


>sp|Q12888|TP53B_HUMAN Tumor suppressor p53-binding protein 1 OS=Homo
            sapiens GN=TP53BP1 PE=1 SV=2
          Length = 1972

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 352  KPNRPSQDPKAPATKAPIFQGPGIPSNSTEQTDV 251
            KP  P +DP +PA++  + QGP  P      TDV
Sbjct: 1091 KPISPVKDPVSPASQKMVIQGPSSPQGEAMVTDV 1124


>sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=evl
           PE=2 SV=1
          Length = 692

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = -1

Query: 470 KVNRRLLNEELKQSE*LKQPSRLHIKRIAINHGLNPDHLQTQPPITRS*SSSNKGSHIPG 291
           ++ RR + E+ ++ E L++ +   +  + IN   +P H Q+ PP   + S+S     +P 
Sbjct: 138 EIQRRQMLEQQQRQETLERRTSTTVSTLQINVSSSPSHCQSPPPDYSNFSASPSTGAVPP 197

Query: 290 PRHS 279
           P ++
Sbjct: 198 PSYA 201


>sp|P03377|ENV_HV1BR Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate BRU/LAI group M
           subtype B) GN=env PE=1 SV=1
          Length = 861

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 209 HLYKWSWSWSSAHFHISLFCGI*RNAWALEYGSLCCW 319
           HL++W W W +    I + C      W   Y  +  W
Sbjct: 9   HLWRWGWKWGTMLLGILMICSATEKLWVTVYYGVPVW 45


>sp|Q6GX86|CQ053_RAT Uncharacterized protein C17orf53 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 607

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 349 PNRPSQDPKAPATKAPIFQGPGIPSNSTEQTDVKMCTGPAP 227
           P +P Q P+A ++  P F GP  P +S+       C GP+P
Sbjct: 249 PGQPLQSPRAWSSGKPRFSGPQCPHSSS----AAFCRGPSP 285


>sp|Q02479|BRLF1_BHV4D Putative transcription activator BRLF1
           homolog OS=Bovine herpesvirus 4 (strain DN-599) GN=IE2
           PE=3 SV=1
          Length = 552

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 384 HQPWPKSRPSANPTAHHKILKLQQQRLPYS 295
           HQ WP    SA P A   +L LQ + LP S
Sbjct: 348 HQTWPNDETSALPIASASLLSLQAENLPTS 377


>sp|Q0IWF3|NIP31_ORYSJ Aquaporin NIP3-1 OS=Oryza sativa subsp.
           japonica GN=NIP3-1 PE=2 SV=2
          Length = 311

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 26/99 (26%)
 Frame = -2

Query: 349 PNRPSQDPKAPATKAPIFQGPGIPSNSTEQTDVKMCTG--------------------PA 230
           P   +  P  P T AP+F GP + S S E+  +  C                      PA
Sbjct: 17  PVNGASAPATPGTPAPLFAGPRVDSLSYERKSMPRCKCLPAAVAEAWAPSAHGCVVEIPA 76

Query: 229 PRPFVQMKLGHSFPVTAI----ARALPLITK--GEIINP 131
           P   +  KLG  F  T I    A A P++ +  G  I+P
Sbjct: 77  PDVSLTRKLGAEFVGTFILIFFATAAPIVNQKYGGAISP 115


>sp|Q32P12|CQ053_MOUSE Uncharacterized protein C17orf53 homolog
           OS=Mus musculus PE=2 SV=2
          Length = 615

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
 Frame = -2

Query: 349 PNRPSQDPKAPATKAPIFQGPGIPSNSTEQTDVKMCTGP----APRPFVQMKL----GHS 194
           P +P Q P+A ++  P F GP  P  S+       C GP    AP   V+  +      S
Sbjct: 266 PGQPLQSPRAWSSGKPRFSGPQRPHGSS----AAFCQGPLSSRAPVSSVESPVSTPRNTS 321

Query: 193 FPVTAIARALPLIT 152
            PVT  A   P++T
Sbjct: 322 TPVTQPALQTPVVT 335


>sp|Q3J5K7|ISPE_RHOS4 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Rhodobacter sphaeroides (strain ATCC 17023 /
           2.4.1 / NCIB 8253 / DSM 158) GN=ispE PE=3 SV=1
          Length = 278

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 235 PAPRPFVQMKLGHSFPVTAIARALPLITKGEIINPM 128
           P P P   +KLG   PV    RA+ +   GEI+ P+
Sbjct: 115 PLPEPAAVLKLGADVPVCLEGRAVRMAGVGEILTPL 150


>sp|P04624|ENV_HV1H3 Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate HXB3 group M
           subtype B) GN=env PE=1 SV=3
          Length = 856

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 209 HLYKWSWSWSSAHFHISLFCGI*RNAWALEYGSLCCW 319
           HL++W W W +    + + C      W   Y  +  W
Sbjct: 9   HLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVW 45
tr_hit_id Q74831
Definition tr|Q74831|Q74831_9HIV1 Envelope glycoprotein gp120 (Fragment) OS=Human immunodeficiency virus 1
Align length 37
Score (bit) 35.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921798|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_C06.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q74831|Q74831_9HIV1 Envelope glycoprotein gp120 (Fragment) OS...    35   2.5  
tr|A6G5T9|A6G5T9_9DELT Na(+)-translocating NADH-quinone reductas...    34   4.3  
tr|Q23YU2|Q23YU2_TETTH Putative uncharacterized protein OS=Tetra...    34   4.3  
tr|B4S5U2|B4S5U2_PROA2 NADH:ubiquinone oxidoreductase, subunit D...    34   5.6  
tr|A3X357|A3X357_9RHOB Amidase family protein OS=Roseobacter sp....    34   5.6  
tr|A1E0H2|A1E0H2_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.3  
tr|Q4QFN7|Q4QFN7_LEIMA Putative uncharacterized protein OS=Leish...    33   7.3  
tr|A1D2Q8|A1D2Q8_NEOFI Quinate pathway repressor protein QutR, p...    33   7.3  
tr|Q21EN5|Q21EN5_SACD2 Putative uncharacterized protein OS=Sacch...    33   9.5  
tr|B0MXK6|B0MXK6_9BACT Putative uncharacterized protein OS=Alist...    33   9.5  
tr|Q22D43|Q22D43_TETTH Putative uncharacterized protein OS=Tetra...    33   9.5  
tr|A0DL94|A0DL94_PARTE Chromosome undetermined scaffold_55, whol...    33   9.5  
tr|B8P2L7|B8P2L7_9APHY Predicted protein OS=Postia placenta Mad-...    33   9.5  

>tr|Q74831|Q74831_9HIV1 Envelope glycoprotein gp120 (Fragment)
           OS=Human immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 502

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 209 HLYKWSWSWSSAHFHISLFCGI*RNAWALEYGSLCCW 319
           HL++W W W S    I + C    N W   Y  +  W
Sbjct: 9   HLWRWGWKWGSMLLGILMICSASDNLWVTVYYGVPAW 45


>tr|A6G5T9|A6G5T9_9DELT Na(+)-translocating NADH-quinone reductase
           subunit D OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_12048
           PE=4 SV=1
          Length = 207

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 120 TLIMGFIISPFVMRGRALAIAVTGKEWPSFICTNGLGAGPVHIFTSV 260
           ++ +G II+  ++ GRA A A+  + WPSF+   G G G   I  SV
Sbjct: 100 SVFVGLIITNCIVMGRAEAFAMQNEPWPSFVDGVGNGLGYSLILISV 146


>tr|Q23YU2|Q23YU2_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00859180 PE=4
            SV=1
          Length = 2381

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 503  TTTFICYATNSKVNRRLLNEELKQSE*LKQPSRLH-IKRIAINHGLNPDHLQTQPPITRS 327
            TTT    A + + +    N+ LKQ    K   ++H  K++  NH    DH QT  P T S
Sbjct: 1956 TTTTFAIANSQQPHFTNNNQTLKQDNNNKMHQQIHPFKQVNANHQKEQDHHQTHQPATTS 2015

Query: 326  *SSS 315
             SS+
Sbjct: 2016 SSST 2019


>tr|B4S5U2|B4S5U2_PROA2 NADH:ubiquinone oxidoreductase, subunit D
           OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
           GN=Paes_2135 PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 120 TLIMGFIISPFVMRGRALAIAVTGKEWPSFI--CTNGLGAGPVHIFTS 257
           ++ +G II+  ++ GRA A A+    WPS +    NGLG G + +F S
Sbjct: 101 SVFVGLIITNCIVLGRAEAFALKNGVWPSMLDGLGNGLGYGMILLFVS 148


>tr|A3X357|A3X357_9RHOB Amidase family protein OS=Roseobacter sp.
           MED193 GN=MED193_18394 PE=4 SV=1
          Length = 423

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 25/69 (36%), Positives = 33/69 (47%)
 Frame = +3

Query: 144 SPFVMRGRALAIAVTGKEWPSFICTNGLGAGPVHIFTSVCSVEFDGMPGPWNMGAFVAGA 323
           +P V R RA  + V G    S    +GLG  P H  T   ++  D +PG  + G+  A A
Sbjct: 83  APIVARMRAAGLIVIGHTNMSEFAFSGLGLNP-HFGTPPNALRQDLVPGGSSSGSATAVA 141

Query: 324 LGSCDGRLG 350
           LG  D  LG
Sbjct: 142 LGLADLALG 150


>tr|A1E0H2|A1E0H2_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 54

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 209 HLYKWSWSWSSAHFHISLFCGI*RNAWALEYGSLCCW 319
           HL++W W W +    I + C      WA  Y  +  W
Sbjct: 9   HLWRWGWKWGTMLLGILMICSATEKLWATVYYGVPVW 45


>tr|Q4QFN7|Q4QFN7_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF14.0980 PE=4 SV=1
          Length = 646

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = +1

Query: 262 VLWNLTEC--LGPG--IWEPLLLEL*DLVMGGWVCR 357
           +LWN+  C  + PG  +W+PL+L +   ++GG +CR
Sbjct: 95  LLWNMLPCWLVEPGGYVWDPLVLVIVSAIVGGLICR 130


>tr|A1D2Q8|A1D2Q8_NEOFI Quinate pathway repressor protein QutR,
           putative OS=Neosartorya fischeri (strain ATCC 1020 / DSM
           3700 / NRRL 181) GN=NFIA_013910 PE=4 SV=1
          Length = 922

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = -1

Query: 458 RLLNEELKQSE*LKQPSRLHIKRIAINHGLNPDHLQTQPPITRS*SSSNKGSHIPGPRHS 279
           R    +L + E ++ P+R    R + NHG+  D +Q  P I     +S + + +P P   
Sbjct: 6   RPAKRKLDEVERIEAPNRHLSARGSRNHGIVSDAIQ--PSIL----ASERDAALPRPESC 59

Query: 278 VKFHRTD*CENVHW--TSSKTICTNETRP 198
            +  ++D C   HW   S +T+ +N   P
Sbjct: 60  PRHEQSDTCSEHHWYSNSPRTLNSNRASP 88


>tr|Q21EN5|Q21EN5_SACD2 Putative uncharacterized protein
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=Sde_3589 PE=4 SV=1
          Length = 334

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 23/79 (29%), Positives = 31/79 (39%)
 Frame = -2

Query: 352 KPNRPSQDPKAPATKAPIFQGPGIPSNSTEQTDVKMCTGPAPRPFVQMKLGHSFPVTAIA 173
           KP      PK  A KA        P+ +  +        PAP   V  K     P T +A
Sbjct: 217 KPAAKKAAPKKAAPKAAAAADKPAPAKAAPKAPEAKVETPAP--VVPPKPAPVIPATPVA 274

Query: 172 RALPLITKGEIINPMIRVE 116
            A P + K E+  P ++VE
Sbjct: 275 PAAPAVEKTEVKKPEVKVE 293


>tr|B0MXK6|B0MXK6_9BACT Putative uncharacterized protein
           OS=Alistipes putredinis DSM 17216 GN=ALIPUT_01869 PE=4
           SV=1
          Length = 217

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 120 TLIMGFIISPFVMRGRALAIAVTGKEWPSFI--CTNGLGAGPVHIFTS 257
           ++ +G II+  ++ GR  A A+  K WP+F+    NGLG G + +  +
Sbjct: 108 SVYVGLIITNCIVMGRVEAFALGNKPWPAFLDGIGNGLGYGMILVIVA 155