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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921800
Clone id YMU001_000154_C08
Library
Length 225
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGGGGCACACCAACGCCCACGTGGGTGTACACATCCACAGTCTCCCCGGGCACATCTTC
CACATGGAATGCAACAGTGCCGGTGATGTGGGCCACGGACGACACCCACATCTGAGAAAC
AAAGAGGCCTGTGCGGTGCGGAAACACGCGATGCGCATAGCAGCGCTGCGTTGGCAGAGC
AATGGATTGCTGAGTCGTGATGCGCCCAAGCTCGCCATCTATAAG
■■Homology search results ■■ -
sp_hit_id Q09589
Definition sp|Q09589|HIRA_CAEEL Protein HIRA homolog OS=Caenorhabditis elegans
Align length 38
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921800|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_C08.
         (225 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09589|HIRA_CAEEL Protein HIRA homolog OS=Caenorhabditis eleg...    34   0.26 
sp|Q9QAX1|POLG_HCVVA Genome polyprotein OS=Hepatitis C virus gen...    33   0.57 
sp|Q99IB8|POLG_HCVJF Genome polyprotein OS=Hepatitis C virus gen...    32   0.97 
sp|O39928|POLG_HCVEV Genome polyprotein OS=Hepatitis C virus gen...    32   1.3  
sp|Q01645|MS84D_DROME Male-specific sperm protein Mst84Dd OS=Dro...    31   2.2  
sp|Q9WMX2|POLG_HCVCO Genome polyprotein OS=Hepatitis C virus gen...    30   2.8  
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g...    30   2.8  
sp|Q6DFV1|CNDG2_MOUSE Condensin-2 complex subunit G2 OS=Mus musc...    30   2.8  
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprod...    30   3.7  
sp|O91936|POLG_HCVSA Genome polyprotein OS=Hepatitis C virus gen...    30   3.7  
sp|P17256|KIME_RAT Mevalonate kinase OS=Rattus norvegicus GN=Mvk...    30   3.8  
sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus gen...    30   4.8  
sp|O92529|POLG_HCVT5 Genome polyprotein OS=Hepatitis C virus gen...    30   4.8  
sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus gen...    30   4.8  
sp|Q5I2N3|POLG_HCV6A Genome polyprotein OS=Hepatitis C virus gen...    30   4.8  
sp|Q6D8S0|NORV_ERWCT Anaerobic nitric oxide reductase flavorubre...    30   4.8  
sp|P56307|PSBB_CHLVU Photosystem II CP47 chlorophyll apoprotein ...    30   5.0  
sp|O92531|POLG_HCVVO Genome polyprotein OS=Hepatitis C virus gen...    29   6.3  
sp|Q913V3|POLG_HCVR6 Genome polyprotein OS=Hepatitis C virus gen...    29   6.3  
sp|Q81754|POLG_HCVH9 Genome polyprotein OS=Hepatitis C virus gen...    29   6.3  
sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus gen...    29   6.3  
sp|Q9JMT2|YUAG_ECOLI Uncharacterized protein yuaG OS=Escherichia...    29   8.2  
sp|Q81495|POLG_HCVK3 Genome polyprotein OS=Hepatitis C virus gen...    29   8.2  
sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus gen...    29   8.2  
sp|P27961|POLG_HCVJ7 Genome polyprotein (Fragment) OS=Hepatitis ...    29   8.2  
sp|P27960|POLG_HCVJ5 Genome polyprotein (Fragment) OS=Hepatitis ...    29   8.2  
sp|P46213|SYI_THEMA Isoleucyl-tRNA synthetase OS=Thermotoga mari...    29   8.5  
sp|P48103|PSBB_CYAPA Photosystem II CP47 chlorophyll apoprotein ...    29   8.5  

>sp|Q09589|HIRA_CAEEL Protein HIRA homolog OS=Caenorhabditis elegans
           GN=K10D2.1 PE=2 SV=2
          Length = 935

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 73  NSAGDVGHGRHPHLRNKEACAVRKHAMRIAALRWQSNG 186
           NS G +  G     R KE C +R H+M +  + W  NG
Sbjct: 108 NSMGSITGGAQNVERYKECCVLRGHSMEVLTVEWSPNG 145


>sp|Q9QAX1|POLG_HCVVA Genome polyprotein OS=Hepatitis C virus
           genotype 2k (isolate VAT96) PE=3 SV=3
          Length = 3033

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -2

Query: 191 SNPLLCQRSAAMRIACFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW 36
           S  LLC         CFR    + + RCG  PW T   L H      P RLW
Sbjct: 580 SEDLLCPTD------CFRKHSEATYTRCGAGPWLTPKCLFH-----YPYRLW 620


>sp|Q99IB8|POLG_HCVJF Genome polyprotein OS=Hepatitis C virus
           genotype 2a (isolate JFH-1) PE=3 SV=3
          Length = 3033

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -2

Query: 191 SNPLLCQRSAAMRIACFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW 36
           S  LLC         CFR    + +++CG  PW T   L+H      P RLW
Sbjct: 580 STDLLCPTD------CFRKHPDATYIKCGSGPWLTPKCLVH-----YPYRLW 620


>sp|O39928|POLG_HCVEV Genome polyprotein OS=Hepatitis C virus
           genotype 5a (isolate EUH1480) PE=3 SV=3
          Length = 3014

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 146 CFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW--MCTPTWAL 12
           CFR    + + RCG  PW T   L+H      P RLW   CT  + +
Sbjct: 586 CFRKHPDATYTRCGSGPWLTPRCLVH-----YPYRLWHYPCTVNYTI 627


>sp|Q01645|MS84D_DROME Male-specific sperm protein Mst84Dd
           OS=Drosophila melanogaster GN=Mst84Dd PE=2 SV=2
          Length = 72

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = -3

Query: 136 PHRPLCFSDVGVVRGPHHRHCCIPCGRCARGDCGCVHPRGRWCAP 2
           P  P C    G   GP    CC PCG C    CG   PR   C P
Sbjct: 12  PCGPCCGPCCGPCCGPCCGPCCGPCGPC----CGPCGPRCGPCGP 52



 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 139 APHRPLCFSDVGVVRGPHHRHCCIPCGRCARGDCG-CVHPRGRWCAP 2
           AP  P C    G   GP    CC PC     G CG C  P G  C P
Sbjct: 4   APGGPCC-GPCGPCCGPCCGPCCGPCCGPCCGPCGPCCGPCGPRCGP 49


>sp|Q9WMX2|POLG_HCVCO Genome polyprotein OS=Hepatitis C virus
           genotype 1b (isolate Con1) PE=1 SV=3
          Length = 3010

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 146 CFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW 36
           CFR    + + +CG  PW T   L+H      P RLW
Sbjct: 585 CFRKHPEATYTKCGSGPWLTPRCLVH-----YPYRLW 616


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
           gambiae GN=nkd PE=2 SV=1
          Length = 886

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 9   HQRPRGCTHPQSPRAHLPHGMQQCR*CG 92
           H +P+  + PQSP+ H  H  Q+ R CG
Sbjct: 819 HHQPQSRSQPQSPQHHQHHHQQEPRYCG 846


>sp|Q6DFV1|CNDG2_MOUSE Condensin-2 complex subunit G2 OS=Mus musculus
            GN=Ncapg2 PE=2 SV=1
          Length = 1138

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 214  RAWAHHDSAIHCSANAALLCASRVSAPHRPLCFSDVGVVRGPHHRHCCIPCGRCARG 44
            ++W H D+A+H +  + L+ A  V   H+    SD+  +  P   H   P  RC  G
Sbjct: 990  QSW-HKDTAVHHAVLSTLIAAPVVEISHQLQKVSDIEELTSPQCLHDLPPFSRCLVG 1045


>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine
            reproductive and respiratory syndrome virus (strain HB-1)
            GN=rep PE=2 SV=2
          Length = 3963

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 139  APHRPLCFSDVGVVRGPHHRHC--CIPCGRCA-RGDCG-CVHPRGRWCAP 2
            AP+   C  DV V     H+HC   I CG  A  G CG C  P G+  +P
Sbjct: 3160 APYATACGLDVCVYHTHFHQHCPVIIWCGHPAGSGSCGECEPPLGKGTSP 3209


>sp|O91936|POLG_HCVSA Genome polyprotein OS=Hepatitis C virus
           genotype 5a (isolate SA13) PE=3 SV=3
          Length = 3014

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 146 CFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW 36
           CFR    + + +CG  PW T   L+H      P RLW
Sbjct: 586 CFRKHPDATYTKCGSGPWLTPRCLVH-----YPYRLW 617
tr_hit_id A4QZG9
Definition tr|A4QZG9|A4QZG9_MAGGR Predicted protein OS=Magnaporthe grisea
Align length 59
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921800|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_C08.
         (225 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QZG9|A4QZG9_MAGGR Predicted protein OS=Magnaporthe grisea G...    37   0.64 
tr|Q2TXQ0|Q2TXQ0_ASPOR Predicted protein OS=Aspergillus oryzae G...    35   1.4  
tr|B8NVE7|B8NVE7_ASPFL Putative uncharacterized protein OS=Asper...    35   1.4  
tr|B3TKW6|B3TKW6_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    35   1.4  
tr|A8WVA7|A8WVA7_CAEBR Putative uncharacterized protein (Fragmen...    35   2.4  
tr|O13524|O13524_SCHCO B2-aldehyde-forming enzyme OS=Schizophyll...    35   2.5  
tr|Q4PQU9|Q4PQU9_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    34   4.2  
tr|Q4PQU8|Q4PQU8_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    34   4.2  
tr|B3TKX0|B3TKX0_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    34   4.2  
tr|B2LXS8|B2LXS8_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    34   4.2  
tr|A1YBK6|A1YBK6_9HEPC Polyprotein (Fragment) OS=Hepatitis C vir...    34   4.2  
tr|Q5XN23|Q5XN23_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   5.5  
tr|Q4PQQ1|Q4PQQ1_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   5.5  
tr|Q4KP43|Q4KP43_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   5.5  
tr|B3TL65|B3TL65_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   5.5  
tr|B3TKX8|B3TKX8_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   5.5  
tr|A1YBF8|A1YBF8_9HEPC Polyprotein (Fragment) OS=Hepatitis C vir...    33   5.5  
tr|B3K2V6|B3K2V6_9DELT Phosphoglucomutase OS=Geobacter sp. M21 G...    33   5.5  
tr|B4K655|B4K655_DROMO GI23522 OS=Drosophila mojavensis GN=GI235...    33   7.1  
tr|B8R4Q7|B8R4Q7_PHACH Delta-12 desaturase OS=Phanerochaete chry...    33   7.1  
tr|Q4PQU3|Q4PQU3_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   7.1  
tr|Q4KP41|Q4KP41_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   7.1  
tr|B3TKW2|B3TKW2_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   7.1  
tr|B3TKL7|B3TKL7_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   7.1  
tr|Q1KL32|Q1KL32_9HEPC Genome polyprotein OS=Hepatitis C virus s...    33   9.3  
tr|B3TKK9|B3TKK9_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   9.3  
tr|B3TKH4|B3TKH4_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   9.3  
tr|B3TKD6|B3TKD6_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   9.3  
tr|B2ZGD0|B2ZGD0_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   9.3  
tr|B2ZGC5|B2ZGC5_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   9.3  

>tr|A4QZG9|A4QZG9_MAGGR Predicted protein OS=Magnaporthe grisea
           GN=MGG_07960 PE=4 SV=1
          Length = 400

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = -1

Query: 222 IDGELGRITTQQSIALPTQRCYAHRVFPHRTGLFVSQMWVSSVAHITGTVAFHVEDVPG 46
           I+  +  IT ++ IALPTQ  +AHRV    + + VS++   ++AH+      +  +VPG
Sbjct: 339 INDAISAITGEEYIALPTQDAWAHRVVVVNSTVMVSELRTYTLAHLV-----YENEVPG 392


>tr|Q2TXQ0|Q2TXQ0_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090010000057 PE=4 SV=1
          Length = 397

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -1

Query: 219 DGELGRITTQQSIALPTQRCYAHRVFPHRTGLFVSQMWVSSVAHITGTVAFHVEDVPGET 40
           D  +  I+ ++ I++PTQ    HRV P    + VS++   ++A +T       + +P E 
Sbjct: 327 DAGVTSISGEEYISMPTQNAMVHRVLPLDKTVLVSELHTFTLAQLTYNNTIAGQWLPAEA 386

Query: 39  VD---VYTHVG 16
           V    VYT  G
Sbjct: 387 VSNTTVYTEAG 397


>tr|B8NVE7|B8NVE7_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_116340 PE=4 SV=1
          Length = 397

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -1

Query: 219 DGELGRITTQQSIALPTQRCYAHRVFPHRTGLFVSQMWVSSVAHITGTVAFHVEDVPGET 40
           D  +  I+ ++ I++PTQ    HRV P    + VS++   ++A +T       + +P E 
Sbjct: 327 DAGVTSISGEEYISMPTQNAMVHRVLPLDKTVLVSELHTFTLAQLTYNNTIAGQWLPAEA 386

Query: 39  VD---VYTHVG 16
           V    VYT  G
Sbjct: 387 VSNTTVYTEAG 397


>tr|B3TKW6|B3TKW6_9HEPC Polyprotein OS=Hepatitis C virus subtype 1a
           PE=4 SV=1
          Length = 3011

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 191 SNPLLCQRSAAMRIACFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW--MCTPTW 18
           SNPL C         CFR    + + RCG  PW T   L+H      P RLW   CT  +
Sbjct: 576 SNPLHCPTD------CFRKHPEATYSRCGSGPWITPRCLVH-----YPYRLWHYPCTVNY 624

Query: 17  AL 12
            L
Sbjct: 625 TL 626


>tr|A8WVA7|A8WVA7_CAEBR Putative uncharacterized protein (Fragment)
           OS=Caenorhabditis briggsae GN=CBG03541 PE=4 SV=1
          Length = 1201

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 73  NSAGDVGHGRHPHLRNKEACAVRKHAMRIAALRWQSNG 186
           NS G +  G     R KE C +R H M + A+ W  NG
Sbjct: 383 NSLGSITGGAQNVERYKECCVLRGHRMEVLAVEWSPNG 420


>tr|O13524|O13524_SCHCO B2-aldehyde-forming enzyme OS=Schizophyllum
           commune PE=2 SV=1
          Length = 200

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 2   WGTPTPTWVYTSTVSPGTSSTWNAT 76
           W  P+ TW  TST +P T+STW++T
Sbjct: 102 WQEPSTTWTPTSTWTPETTSTWSST 126


>tr|Q4PQU9|Q4PQU9_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus PE=4 SV=1
          Length = 1644

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 146 CFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW--MCTPTWAL 12
           CFR    + + RCG  PW T   L+H  +     RLW   CT  W L
Sbjct: 585 CFRKHPEATYSRCGSGPWITPRCLVHYSY-----RLWHYPCTFNWTL 626


>tr|Q4PQU8|Q4PQU8_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus PE=4 SV=1
          Length = 1644

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 146 CFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW--MCTPTWAL 12
           CFR    + + RCG  PW T   L+H  +     RLW   CT  W L
Sbjct: 585 CFRKHPEATYSRCGSGPWITPRCLVHYSY-----RLWHYPCTFNWTL 626


>tr|B3TKX0|B3TKX0_9HEPC Polyprotein OS=Hepatitis C virus subtype 1a
           PE=4 SV=1
          Length = 3011

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 191 SNPLLCQRSAAMRIACFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW--MCTPTW 18
           +N LLC         CFR    + + RCG  PW T   L+H      P RLW   CT  +
Sbjct: 576 NNTLLCPTD------CFRKHPEATYSRCGSGPWITPRCLVH-----YPYRLWHYPCTVNY 624

Query: 17  AL 12
            L
Sbjct: 625 TL 626


>tr|B2LXS8|B2LXS8_9HEPC Polyprotein OS=Hepatitis C virus subtype 1a
           PE=4 SV=1
          Length = 3011

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 146 CFRTAQASLFLRCGCRPWPTSPALLHSMWKMCPGRLW--MCTPTWAL 12
           CFR   A+ + RCG  PW T   L+H      P RLW   CT  + L
Sbjct: 585 CFRKHPAATYSRCGSGPWITPRCLVH-----YPYRLWHYPCTINYTL 626