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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921801
Clone id YMU001_000154_C09
Library
Length 317
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCATACGGGGCCGTCTAACAACTTTAGAGGGCTTCTTTGAATAGTGAACCATGTAGTCAC
CAGGCCGTACTTGCAGCTCTACATGACTGGTGGAGCTCATGCTCTGATCATTTTCACACT
CGTGGTGAGCTTTATCAGAGCAACAATCACAAAAATCAGCCCGAATGTGCTGGTCTTCAA
TGATCGGAATTGTGATTTCCCCCTCCTTCAGATCCATGTCAGTTTGCACCTGCAAAGCTC
CTCCATTATCCACTACTTGTTGCATGCTAAGCTCCAAAGCATGCCTTAACAATGTAGCTT
GCTCTATGATTTTCTTT
■■Homology search results ■■ -
sp_hit_id A0M5I5
Definition sp|A0M5I5|SYV_GRAFK Valyl-tRNA synthetase OS=Gramella forsetii (strain KT0803)
Align length 66
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921801|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_C09.
         (317 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0M5I5|SYV_GRAFK Valyl-tRNA synthetase OS=Gramella forsetii (...    32   1.3  
sp|Q19417|YSNK_CAEEL UPF0392 protein F13G3.3 OS=Caenorhabditis e...    30   4.8  
sp|P10761|ZP3_MOUSE Zona pellucida sperm-binding protein 3 OS=Mu...    29   6.3  

>sp|A0M5I5|SYV_GRAFK Valyl-tRNA synthetase OS=Gramella forsetii
           (strain KT0803) GN=valS PE=3 SV=1
          Length = 876

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 193 TIPIIEDQHIRADFCDCCSDKAHHECENDQSMSSTSHVEL------QVRPGDYMVHYSKK 32
           TIPIIED+++  +F   C        END+++     +++           +Y +HY  K
Sbjct: 252 TIPIIEDEYVDMEFGTGCLKVTPAHDENDKNLGDKHDLDVIDIFNDDATLNNYGLHYEGK 311

Query: 31  PSKVVR 14
              VVR
Sbjct: 312 DRFVVR 317


>sp|Q19417|YSNK_CAEEL UPF0392 protein F13G3.3 OS=Caenorhabditis
           elegans GN=F13G3.3 PE=2 SV=2
          Length = 501

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +2

Query: 53  VVTRPYLQLYMTGGAHALIIFTLVVSFIRATITKISPNVLVFNDRNCDFPLLQIHV---- 220
           +V  P L L   GG HA I F +V S  +  +  ISP   +F   N    L+ +HV    
Sbjct: 123 IVLNPSLLLVSLGGNHAPIPFEVVSSEPKPVVMCISP---LFAAENWHNLLVSLHVYKIF 179

Query: 221 --SLHLQSSSIIHYLL 262
              +HL   SI+  +L
Sbjct: 180 GAHMHLYIRSIVSPML 195


>sp|P10761|ZP3_MOUSE Zona pellucida sperm-binding protein 3 OS=Mus
           musculus GN=Zp3 PE=1 SV=4
          Length = 424

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 160 ADFCDCCSDKAHHECENDQSMSSTSHVELQVRPGDYMVHYSKKPSKVVRRPR 5
           AD CDCCS   H  C N  S               + +H  ++ SK+V R R
Sbjct: 317 ADICDCCS---HGNCSNSSS-------------SQFQIHGPRQWSKLVSRNR 352
tr_hit_id B3S786
Definition tr|B3S786|B3S786_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens
Align length 75
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921801|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_C09.
         (317 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3S786|B3S786_TRIAD Putative uncharacterized protein OS=Trich...    34   3.2  
tr|Q56EH5|Q56EH5_9CAUD Putative uncharacterized protein PHG31ORF...    34   4.2  
tr|Q6U9B4|Q6U9B4_9CAUD Putative uncharacterized protein OS=Aerom...    33   7.1  

>tr|B3S786|B3S786_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_30372 PE=4 SV=1
          Length = 320

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 53  VVTRPYLQLYMTGGAHALIIFTLVVSFIRATITKISPNVLVFNDRN-----CDFPLLQIH 217
           V+ RP    Y T     +II  + +  +  +I       L   D N     CD+P + + 
Sbjct: 117 VIVRPLNNFYRTNKKKIVIISEIFIWLLSGSIAIPDTVYLQSQDENEYTSMCDYPNMTVS 176

Query: 218 VSLHLQSSSIIHYLL 262
           V ++L S S+ +Y+L
Sbjct: 177 VGVYLVSFSVFYYIL 191


>tr|Q56EH5|Q56EH5_9CAUD Putative uncharacterized protein
           PHG31ORF188c OS=Aeromonas phage 31 GN=PHG31ORF188c PE=4
           SV=1
          Length = 319

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 188 NCDFPLLQIHVSLHLQSSSIIHYLLHAKLQSMP*QCSLLYD 310
           N DFP  QI +++H+  S I H ++ AK+   P +C ++ D
Sbjct: 237 NLDFPNRQIKINMHIDCSGIKH-IVPAKITGYPEECEIILD 276


>tr|Q6U9B4|Q6U9B4_9CAUD Putative uncharacterized protein
           OS=Aeromonas phage 44RR2.8t GN=44RRORF188c PE=4 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 188 NCDFPLLQIHVSLHLQSSSIIHYLLHAKLQSMP*QCSLLYD 310
           N DFP  QI +++H+  S I H ++ AK+   P +C ++ D
Sbjct: 237 NPDFPNRQIKINMHIDCSGIKH-IVPAKITGYPEECEIILD 276