NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921808
Clone id YMU001_000154_D07
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGCCAACGGTTGAAGAAAGAGTGGTTTTGGTTCAGATGTTCAAAAAGCTAGTGCCAAGC
TCGAGGCTACCTCACCTAAGAGGCCCTATAGGTGTTGGGTTGCTTTCTTGTGATGAAGAA
TGTTTGAAACTGGCTGAAGAACAGAAAGCTAGAGATGAGATGGAAGGACTACGCCATGAG
GACAGCGCAAGTGATAGAAGATCCACCCAAAAAGGTGGGCAAACGCAGGCGCCATTATGC
TTCTGATGTCTATGTGAAGCACTCTAAAATGAGGGAGATCTCTACAAGAATTCTGAAGTG
GTGTATGCTTGTATTGGTAATTATCCTGTTAGCAGCAGGCATCTACTTTGGAAAACGAGG
GCTATATGCTCTCTCAGACTGGATGAATGAACGTGAAGCTAGACGTCCTCAAAGAAAGCT
AAGTGCAAGGCACTGATCCTTATTTGTGAGTCCAAATTTTCTTACATC
■■Homology search results ■■ -
sp_hit_id A8MX80
Definition sp|A8MX80|YM017_HUMAN Putative UPF0607 protein ENSP00000383144 OS=Homo sapiens
Align length 79
Score (bit) 32.7
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921808|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_D07.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8MX80|YM017_HUMAN Putative UPF0607 protein ENSP00000383144 O...    33   0.82 
sp|Q5PR19|YI024_HUMAN Putative UPF0607 protein LOC392364 OS=Homo...    33   0.82 
sp|Q2NC10|IF2_ERYLH Translation initiation factor IF-2 OS=Erythr...    31   3.1  
sp|Q51856|RBL_PSEHY Ribulose bisphosphate carboxylase large chai...    30   6.8  
sp|Q82KE1|NRDR_STRAW Transcriptional repressor nrdR OS=Streptomy...    29   9.1  

>sp|A8MX80|YM017_HUMAN Putative UPF0607 protein ENSP00000383144
           OS=Homo sapiens PE=3 SV=2
          Length = 341

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
 Frame = +1

Query: 37  MFKKLVPSSRLPHLRGPIGVGLLSCDEECLKL--------AEEQK----ARDEMEGLRHE 180
           MF  L P  R+PHLRG   + L S DE+ +          AEE K     +D++E    E
Sbjct: 39  MFGHLSPM-RIPHLRGKFNLQLPSLDEQVIPARLPKTEVRAEEPKEATEVKDQVETQEQE 97

Query: 181 DSASDRRSTQKGGQTQAPL 237
           D+     S  +   T  PL
Sbjct: 98  DNKRGPCSNGEAASTSRPL 116


>sp|Q5PR19|YI024_HUMAN Putative UPF0607 protein LOC392364 OS=Homo
           sapiens PE=2 SV=2
          Length = 223

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
 Frame = +1

Query: 34  QMFKKLVPSSRLPHLRGPIGVGLLSCDEECLKL--------AEEQK----ARDEMEGLRH 177
           +MF  L P  R+PHLRG   + L S DE+ +          AEE K     +D++E    
Sbjct: 75  RMFGHLSPV-RIPHLRGKFNLRLPSLDEQVIPARLPKMEVRAEEPKEATEVKDQVETQEQ 133

Query: 178 EDSASDRRSTQKGGQTQAPL 237
           ED+     S  +   T  PL
Sbjct: 134 EDNKRGPCSNGEAASTSRPL 153


>sp|Q2NC10|IF2_ERYLH Translation initiation factor IF-2
           OS=Erythrobacter litoralis (strain HTCC2594) GN=infB
           PE=3 SV=1
          Length = 832

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 43  KKLVPSSRLPHLRGPIGVGLLSCDEECLKLAEEQKARDEMEGLRHEDSASDRRSTQKGGQ 222
           KK  P++  P  R  +       +EE LKLAE+ + RD+ +  ++ D    R+   K  +
Sbjct: 80  KKPAPAAETPQER--VARLQREAEEERLKLAEDARKRDDQKAKQNADDEKKRQEENKKAE 137

Query: 223 TQA 231
            +A
Sbjct: 138 EEA 140


>sp|Q51856|RBL_PSEHY Ribulose bisphosphate carboxylase large chain
           OS=Pseudomonas hydrogenothermophila GN=cbbL PE=3 SV=1
          Length = 474

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +2

Query: 155 MRWKDYAMRTAQVIEDPPKKVGKRRRHYAS-------DVYVKHSKMREISTRIL 295
           MRW+D  +   + IE    + G+R+ HY +       ++Y +    +EI T I+
Sbjct: 206 MRWRDRFLFCQEAIEKAQAETGERKGHYMNVTGPTMEEIYKRAEFAKEIGTPII 259


>sp|Q82KE1|NRDR_STRAW Transcriptional repressor nrdR OS=Streptomyces
           avermitilis GN=nrdR PE=3 SV=1
          Length = 187

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 127 KLAEEQKARDEMEGLRHEDSASDRRSTQK--GGQTQAPL 237
           +L EEQ+ R  ++   HED+ ++R+ T +  GG  + P+
Sbjct: 143 ELREEQRERPAVDDEDHEDAGAERQGTDRGSGGTVEVPV 181
tr_hit_id B8ADD8
Definition tr|B8ADD8|B8ADD8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 75
Score (bit) 47.0
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921808|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_D07.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8ADD8|B8ADD8_ORYSI Putative uncharacterized protein OS=Oryza...    47   1e-05
tr|Q5ZEL8|Q5ZEL8_ORYSJ cDNA clone:J013082G02, full insert sequen...    46   5e-05
tr|Q7F803|Q7F803_ORYSJ Similar to Arabidopsis thaliana chromosom...    46   5e-05
tr|A2ZPH9|A2ZPH9_ORYSJ Putative uncharacterized protein OS=Oryza...    46   6e-05
tr|A9SXY1|A9SXY1_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.004
tr|A7Q3H8|A7Q3H8_VITVI Chromosome chr13 scaffold_48, whole genom...    35   0.20 
tr|Q9FFK8|Q9FFK8_ARATH Similarity to unknown protein OS=Arabidop...    34   3.2  
tr|Q5AVE4|Q5AVE4_EMENI Putative uncharacterized protein OS=Emeri...    33   9.3  

>tr|B8ADD8|B8ADD8_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_00492 PE=4 SV=1
          Length = 906

 Score = 47.0 bits (110), Expect(2) = 1e-05
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = +2

Query: 194  IEDPPKKVGKRRRHYASDVYVKHSKMREISTRILKWCMXXXXXXXXXXGIYFGKRGLYAL 373
            +E+ PK+  +R R   S   V+ SK +EI    LK+ +          G+Y   +G+Y L
Sbjct: 828  VENVPKRRKRRNRGQES---VESSKFQEIKAVALKFLLVIFLCIIAVAGLYLLWKGVYRL 884

Query: 374  SDWMNEREARRPQRK 418
            SDWMNE E +R +++
Sbjct: 885  SDWMNEMEEQRARQR 899



 Score = 25.0 bits (53), Expect(2) = 1e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 7   TVEERVVLVQMFKKLVPSSRLPHL--RGPIGVGLLSCDEECLKLAEEQKARDEMEGLR 174
           T+++  +   + K+   S R P    +    VGLL+C E+C+K   + KA D    LR
Sbjct: 762 TLKKEWICQDVLKEYRQSGRDPKQIPKNQYAVGLLACGEDCVK---KVKAADSELHLR 816


>tr|Q5ZEL8|Q5ZEL8_ORYSJ cDNA clone:J013082G02, full insert sequence
            OS=Oryza sativa subsp. japonica GN=P0041E11.9 PE=2 SV=1
          Length = 909

 Score = 45.8 bits (107), Expect(2) = 5e-05
 Identities = 25/75 (33%), Positives = 41/75 (54%)
 Frame = +2

Query: 194  IEDPPKKVGKRRRHYASDVYVKHSKMREISTRILKWCMXXXXXXXXXXGIYFGKRGLYAL 373
            +E+ PK+  +R R   S   V+ SK +EI    LK+ +          G+Y   +G+Y L
Sbjct: 831  VENVPKRRKRRNRGQES---VESSKFQEIKAVALKFLLVIFLCIIVVAGLYLLWKGVYRL 887

Query: 374  SDWMNEREARRPQRK 418
            SDWMN+ E +R +++
Sbjct: 888  SDWMNDMEEQRARQR 902



 Score = 23.9 bits (50), Expect(2) = 5e-05
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  VGLLSCDEECLKLAEEQKARDEMEGLR 174
           VGLL+C E+C+K   + KA D    LR
Sbjct: 796 VGLLACGEDCVK---KVKAADSELHLR 819


>tr|Q7F803|Q7F803_ORYSJ Similar to Arabidopsis thaliana chromosome V
           P1 MJJ3 OS=Oryza sativa subsp. japonica PE=4 SV=1
          Length = 708

 Score = 45.8 bits (107), Expect(2) = 5e-05
 Identities = 25/75 (33%), Positives = 41/75 (54%)
 Frame = +2

Query: 194 IEDPPKKVGKRRRHYASDVYVKHSKMREISTRILKWCMXXXXXXXXXXGIYFGKRGLYAL 373
           +E+ PK+  +R R   S   V+ SK +EI    LK+ +          G+Y   +G+Y L
Sbjct: 630 VENVPKRRKRRNRGQES---VESSKFQEIKAVALKFLLVIFLCIIVVAGLYLLWKGVYRL 686

Query: 374 SDWMNEREARRPQRK 418
           SDWMN+ E +R +++
Sbjct: 687 SDWMNDMEEQRARQR 701



 Score = 23.9 bits (50), Expect(2) = 5e-05
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  VGLLSCDEECLKLAEEQKARDEMEGLR 174
           VGLL+C E+C+K   + KA D    LR
Sbjct: 595 VGLLACGEDCVK---KVKAADSELHLR 618


>tr|A2ZPH9|A2ZPH9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000451 PE=4 SV=1
          Length = 454

 Score = 45.8 bits (107), Expect(2) = 6e-05
 Identities = 25/75 (33%), Positives = 41/75 (54%)
 Frame = +2

Query: 194 IEDPPKKVGKRRRHYASDVYVKHSKMREISTRILKWCMXXXXXXXXXXGIYFGKRGLYAL 373
           +E+ PK+  +R R   S   V+ SK +EI    LK+ +          G+Y   +G+Y L
Sbjct: 376 VENVPKRRKRRNRGQES---VESSKFQEIKAVALKFLLVIFLCIIVVAGLYLLWKGVYRL 432

Query: 374 SDWMNEREARRPQRK 418
           SDWMN+ E +R +++
Sbjct: 433 SDWMNDMEEQRARQR 447



 Score = 23.9 bits (50), Expect(2) = 6e-05
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  VGLLSCDEECLKLAEEQKARDEMEGLR 174
           VGLL+C E+C+K   + KA D    LR
Sbjct: 341 VGLLACGEDCVK---KVKAADSELHLR 364


>tr|A9SXY1|A9SXY1_PHYPA Predicted protein (Fragment) OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_137108 PE=4 SV=1
          Length = 841

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
 Frame = +2

Query: 2    CQRLKKEWFWFRCSKS*CQARGYLT*--EAL*VLGCFLVM--------------KNV*NW 133
            CQRLKKEW         C A+  L    +   V G  L+               K     
Sbjct: 700  CQRLKKEWLC-------CDAQAALPKGSQKSAVFGVGLLPCDQECSRLAAERREKEETEL 752

Query: 134  LKNRKLEMRWKDYAMRTAQVIEDPPKKVGKRRRHYASDVYVKHSKMREISTRILKWCMXX 313
            L++RK     K+  M TA      P KV K+RR    D   K S  + I  +  +W M  
Sbjct: 753  LRHRKS----KEPEMNTA------PVKVPKKRRGRNLDDTTKPSAFKNI-VKAGRWIMIG 801

Query: 314  XXXXXXXXGIYFGKRGLYALSDWMNEREARRPQRKLS 424
                     + +G +GL ALS WM+ R+A +P+R++S
Sbjct: 802  FLVVGAFLVLVYGYKGLLALSRWMDARDAVKPRRRMS 838


>tr|A7Q3H8|A7Q3H8_VITVI Chromosome chr13 scaffold_48, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00029294001
            PE=4 SV=1
          Length = 875

 Score = 35.4 bits (80), Expect(2) = 0.20
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
 Frame = +2

Query: 146  KLEMRWKDYAMRTAQVIE--DP--PKKVGKRRRHYASDVYVKH-SKMREISTRILKWCMX 310
            K+++   +  +R  +V+E  +P   K V KRR+       V+  S++++I +   +  + 
Sbjct: 776  KVKVVDSELQLRKPKVVERKEPHVEKHVPKRRKRRERVQEVQQISRLQKIISTTWRLLLY 835

Query: 311  XXXXXXXXXGIYFGKRGLYALSDWMNEREARRPQRK 418
                       Y+G +GL  LSDWMNE E +R +R+
Sbjct: 836  FTFLMVLIAVTYYGYKGLLWLSDWMNEVEEKRERRR 871



 Score = 21.9 bits (45), Expect(2) = 0.20
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 79  RGPIGVGLLSCDEEC 123
           +   G+GLL C+ EC
Sbjct: 759 KNQFGLGLLPCNSEC 773


>tr|Q9FFK8|Q9FFK8_ARATH Similarity to unknown protein OS=Arabidopsis
            thaliana PE=4 SV=1
          Length = 820

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = +2

Query: 146  KLEMRWKDYAMRTAQVIEDPPKKVGK------RRRHYASDVYVKHSKMREISTRILKWCM 307
            KL++       R  + IE+  +  GK      +RR    D+  + +++++++    +  M
Sbjct: 720  KLQVAESVLTQRNVKEIEEKEEPSGKNASKRRKRRGRGQDIQ-ETTRLQKLAVTTKRILM 778

Query: 308  XXXXXXXXXXGIYFGKRGLYALSDWMNEREARRPQRK 418
                        Y+G +GL  LSDWMNE E +R + +
Sbjct: 779  VVMLVAMLAAVSYYGYKGLLWLSDWMNEVEEQRQKSR 815


>tr|Q5AVE4|Q5AVE4_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN7736.2 PE=4 SV=1
          Length = 637

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
 Frame = +1

Query: 127 KLAEEQKA---RDEMEGLRHEDSASDRRSTQKGGQT 225
           K AEE++A   + EM+ LR E++A+  R T+KGG+T
Sbjct: 553 KTAEEEEANRRKAEMDRLRQEEAATAARMTKKGGRT 588