BP921812
Clone id YMU001_000154_E01
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAAGAGGATGGTGCAGATTTGTCGGAGGCAGAGCACGAACTTCTAGAGGAGAAGTTGGAA
TGCAAGGCTTCCGCGTGGTACTATGTCACCTACCATCCTGACAGCGTGGCTAAGGTGAGG
GAGGTCAATTCAGATTTTCTTTTATTGAGCTTCCCCTGGATTGCTGTGGAGGATCTTGCA
AGGATCAAGTCAAGGAAGCGGCGGGCCTACGAGTCTTACTACAAGCTCATTCAAAGCTTT
GGGGGGACACTGAACTTCAGCTAGAGCATAGTTCTTCTTTGTTACAATGCAGAGCCATAC
AGCAGCTTTGCACTGCAGGCTAAAGGCATTTTCTGTATGTACCACTTTTGTGAATCTTTT
GTATATAGAAACTTACAAATTCAGCCAAGGACTTACAATTGTTGCCAAAAGCTTAGTGGA
GGCTTGCTTACCTGTATAGTGTATAGCCTAGTTTGGCGGCAATTTTCGTTTGTCTAACGA
ACTGGAAAGC
■■Homology search results ■■ -
sp_hit_id O15541
Definition sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens
Align length 29
Score (bit) 30.4
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921812|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_E01.
(474 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens G... 30 4.2
sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=... 30 4.2

>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens
GN=RNF113A PE=1 SV=1
Length = 343

Score = 30.4 bits (67), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3

Query: 318 CMYHFCESFVYRNLQIQPRTYNCCQKLSG 404
C ++FCES ++ + PR Y C Q+ +G
Sbjct: 277 CRHYFCESCALQHFRTTPRCYVCDQQTNG 305


>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus
GN=RNF113A PE=2 SV=1
Length = 343

Score = 30.4 bits (67), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3

Query: 318 CMYHFCESFVYRNLQIQPRTYNCCQKLSG 404
C ++FCES ++ + PR Y C Q+ +G
Sbjct: 277 CRHYFCESCALQHFRTTPRCYVCDQQTNG 305


tr_hit_id A9CRC9
Definition tr|A9CRC9|A9CRC9_TOBAC RNA-dependent RNA polymerase 6 OS=Nicotiana tabacum
Align length 66
Score (bit) 56.2
E-value 8.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921812|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_E01.
(474 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9CRC9|A9CRC9_TOBAC RNA-dependent RNA polymerase 6 OS=Nicotia... 56 8e-07
tr|B4FZU3|B4FZU3_MAIZE Putative uncharacterized protein OS=Zea m... 53 7e-06
tr|Q9SG02|Q9SG02_ARATH Putative RNA-directed RNA polymerase; 739... 53 9e-06
tr|Q9LKP0|Q9LKP0_ARATH RNA-dependent RNA polymerase OS=Arabidops... 53 9e-06
tr|B5BLP6|B5BLP6_TOBAC RNA-dependent RNA polymerase 6 OS=Nicotia... 50 4e-05
tr|B3TNC1|B3TNC1_9SOLA RNA-dependent RNA polymerase OS=Nicotiana... 50 4e-05
tr|Q647I5|Q647I5_NICBE Putative RNA-dependent RNA polymerase SDE... 49 2e-04
tr|A7P5T3|A7P5T3_VITVI Chromosome chr4 scaffold_6, whole genome ... 48 2e-04
tr|B3SND7|B3SND7_GOSHI RNA-dependent RNA polymerase OS=Gossypium... 48 3e-04
tr|Q6RFH9|Q6RFH9_HORVD RNA-directed RNA polymerase 2 OS=Hordeum ... 47 4e-04
tr|B5M059|B5M059_HORVU RNA-directed RNA polymerase 1a (Fragment)... 47 4e-04
tr|B6DZR9|B6DZR9_HORVU RNA-directed RNA polymerase 6a (Fragment)... 47 5e-04
tr|A3AB51|A3AB51_ORYSJ Putative uncharacterized protein OS=Oryza... 47 6e-04
tr|A2X9D0|A2X9D0_ORYSI Putative uncharacterized protein OS=Oryza... 47 6e-04
tr|A0MD71|A0MD71_PHYPA Putative RNA-dependent RNA polymerase 6 O... 47 6e-04
tr|A9U458|A9U458_PHYPA RNA-directed RNA polymerase (Fragment) OS... 46 0.001
tr|A9T7J6|A9T7J6_PHYPA RNA-directed RNA polymerase OS=Physcomitr... 45 0.002
tr|Q8LHH9|Q8LHH9_ORYSJ Putative RNA-dependent RNA polymerase (SH... 44 0.004
tr|Q0JM85|Q0JM85_ORYSJ Os01g0527600 protein (Fragment) OS=Oryza ... 44 0.004
tr|B8A9C4|B8A9C4_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004
tr|B2B9K0|B2B9K0_GOSHI RNA-dependent RNA polymerase OS=Gossypium... 44 0.004
tr|A2ZTX5|A2ZTX5_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.004
tr|A7P3W5|A7P3W5_VITVI Chromosome chr1 scaffold_5, whole genome ... 44 0.005
tr|A5AM83|A5AM83_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005
tr|Q6L447|Q6L447_SOLDE RNA-directed RNA polymerase-like, putativ... 42 0.012
tr|Q6L3V2|Q6L3V2_SOLDE RNA dependent RNA polymerase family prote... 42 0.012
tr|Q6L3P3|Q6L3P3_SOLDE RNA-directed RNA polymerase, putative OS=... 42 0.012
tr|Q19VG2|Q19VG2_MAIZE RNA-dependent RNA polymerase OS=Zea mays ... 42 0.012
tr|Q0KIR2|Q0KIR2_SOLDE RNA dependent RNA polymerase family prote... 42 0.012
tr|Q0KIK9|Q0KIK9_SOLTU RNA-directed RNA polymerase, putative OS=... 42 0.012

>tr|A9CRC9|A9CRC9_TOBAC RNA-dependent RNA polymerase 6 OS=Nicotiana
tabacum GN=NtRDR6 PE=2 SV=1
Length = 1197

Score = 56.2 bits (134), Expect = 8e-07
Identities = 34/66 (51%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVN-----SDFLLLSFPWIAVEDLARIKSRKRR-AYESYYK 209
KASAWY VTYHP VA+ E+ S+ ++LSF WIA + LARIK R RR Y K
Sbjct: 1125 KASAWYQVTYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTK 1184

Query: 210 LIQSFG 227
I S G
Sbjct: 1185 PINSLG 1190


>tr|B4FZU3|B4FZU3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 552

Score = 53.1 bits (126), Expect = 7e-06
Identities = 32/51 (62%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREV-NSDF----LLLSFPWIAVEDLARIKSRKR 185
KASAWY VTYHP+ V K RE+ SD LSF WIAVE LARIK R R
Sbjct: 480 KASAWYQVTYHPEWVQKSREMFKSDCEDMPARLSFAWIAVEHLARIKIRCR 530


>tr|Q9SG02|Q9SG02_ARATH Putative RNA-directed RNA polymerase;
73997-69985 (RNA-directed RNA polymerase-like protein)
(SGS2) OS=Arabidopsis thaliana GN=T9C5.95 PE=4 SV=1
Length = 1196

Score = 52.8 bits (125), Expect = 9e-06
Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREV-----NSDFLLLSFPWIAVEDLARIKSRKR 185
KASAWY+VTYHP+ V K E+ +S +LSF WIA + LARIK R R
Sbjct: 1124 KASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSR 1174


>tr|Q9LKP0|Q9LKP0_ARATH RNA-dependent RNA polymerase OS=Arabidopsis
thaliana GN=SDE1 PE=4 SV=1
Length = 1196

Score = 52.8 bits (125), Expect = 9e-06
Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREV-----NSDFLLLSFPWIAVEDLARIKSRKR 185
KASAWY+VTYHP+ V K E+ +S +LSF WIA + LARIK R R
Sbjct: 1124 KASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSR 1174


>tr|B5BLP6|B5BLP6_TOBAC RNA-dependent RNA polymerase 6 OS=Nicotiana
tabacum GN=rdr6 PE=4 SV=1
Length = 1197

Score = 50.4 bits (119), Expect = 4e-05
Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVN-----SDFLLLSFPWIAVEDLARIKSRKR-RAYESYYK 209
KASAWY VTY+P VA+ E+ S ++LSF WIA + LARIK R R Y K
Sbjct: 1125 KASAWYQVTYNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTK 1184

Query: 210 LIQSFG 227
I S G
Sbjct: 1185 PINSLG 1190


>tr|B3TNC1|B3TNC1_9SOLA RNA-dependent RNA polymerase OS=Nicotiana
attenuata PE=2 SV=1
Length = 1197

Score = 50.4 bits (119), Expect = 4e-05
Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVN-----SDFLLLSFPWIAVEDLARIKSRKR-RAYESYYK 209
KASAWY VTY+P VA+ E+ S ++LSF WIA + LARIK R R Y K
Sbjct: 1125 KASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTK 1184

Query: 210 LIQSFG 227
I S G
Sbjct: 1185 PINSLG 1190


>tr|Q647I5|Q647I5_NICBE Putative RNA-dependent RNA polymerase SDE1
OS=Nicotiana benthamiana PE=2 SV=1
Length = 1197

Score = 48.5 bits (114), Expect = 2e-04
Identities = 31/66 (46%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVN-----SDFLLLSFPWIAVEDLARIKSRKR-RAYESYYK 209
KASAWY VTY+P VA+ E+ S ++LSF WIA + LARI R R Y K
Sbjct: 1125 KASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTK 1184

Query: 210 LIQSFG 227
I S G
Sbjct: 1185 PINSLG 1190


>tr|A7P5T3|A7P5T3_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032651001
PE=4 SV=1
Length = 1197

Score = 48.1 bits (113), Expect = 2e-04
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVNS------DFLLLSFPWIAVEDLARIKSRKR 185
KASAWY VTYHP V K E+ + + ++LSF WI + LARIK R++
Sbjct: 1124 KASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRK 1175


>tr|B3SND7|B3SND7_GOSHI RNA-dependent RNA polymerase OS=Gossypium
hirsutum PE=4 SV=1
Length = 1110

Score = 47.8 bits (112), Expect = 3e-04
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVNSDFLLLSFPWIAVEDLARIKSRKRRAYES 200
KASAWYYVTYHP + E + LSFPW + L +IK K E+
Sbjct: 1043 KASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREA 1093


>tr|Q6RFH9|Q6RFH9_HORVD RNA-directed RNA polymerase 2 OS=Hordeum
vulgare var. distichum GN=RDRP2 PE=2 SV=1
Length = 1115

Score = 47.4 bits (111), Expect = 4e-04
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3

Query: 48 KASAWYYVTYHPDSVAKVREVNSDFLLLSFPWIAVEDLARIKSRK 182
KASAWY+VTYHP+ ++ L+SFPW + L IK RK
Sbjct: 1051 KASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRK 1095