BP921816 |
Clone id |
YMU001_000154_E05 |
Library |
YMU01 |
Length |
436 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000154_E05. |
Accession |
BP921816 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCTCAGTGGGATATCGTGTGCCAGTTTAGATTTTAAATGTGCAATGTCTTCCTGAACTTT TTTCTTTGCCAACTTCTCTTTGTCCAGCTGAGTCAGTATCTCTCCAACTTTTTCCTTGCG GTGAGCAATCTCCTTTTGCGTTGCTTCCAGAAAGGCCTTTGTAGAAACACACTCGTTGTC TGCCTCAGCCAAGCTCCTCTTCAGGACCTCCAAAGTACTTGCATTCTGCCTCCCATCTTC TGCGGACGTGTTGAGCTGATCCAAATGCAGCTTGACCTGCTGTTCCAACCTTGCCACTCT TGGCTTCTGGCCTTCCCCAAAATTCGTAGCATGCTGTATATATTCAGGAAGAGCCTGCCT CTCTTCATTCAAAGTGGAATGCAATTGCTTTGACTTGACACTTTCAGAAACAAGCTTTAT ATTGTACTCATCTCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q336R3 |
Definition |
sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica |
Align length |
139 |
Score (bit) |
78.2 |
E-value |
1.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S3Z1 |
Definition |
tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
139 |
Score (bit) |
120.0 |
E-value |
4.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921816|Adiantum capillus-veneris mRNA, clone: YMU001_000154_E05. (436 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella paten... 120 4e-26 tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomit... 109 8e-23 tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella paten... 100 4e-20 tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome ... 95 2e-18 tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella paten... 91 4e-17 tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella paten... 86 9e-16 tr|B3H5S6|B3H5S6_ARATH Uncharacterized protein At1g55255.2 OS=Ar... 80 5e-14 tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genom... 80 7e-14 tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza... 78 2e-13 tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequen... 78 2e-13 tr|A5ALF9|A5ALF9_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12 tr|B6SHA4|B6SHA4_MAIZE Putative uncharacterized protein OS=Zea m... 72 2e-11 tr|B8Q8A6|B8Q8A6_ORYSI SKIP interacting protein 20 OS=Oryza sati... 71 2e-11 tr|B8ASX7|B8ASX7_ORYSI Putative uncharacterized protein OS=Oryza... 71 2e-11 tr|A9JS25|A9JS25_XENLA LOC100127292 protein OS=Xenopus laevis GN... 70 4e-11 tr|B6PAW8|B6PAW8_BRAFL Putative uncharacterized protein OS=Branc... 69 1e-10 tr|A7MCT5|A7MCT5_HUMAN Ring finger protein 20 OS=Homo sapiens GN... 69 1e-10 tr|A2AIR3|A2AIR3_MOUSE Ring finger protein 20 OS=Mus musculus GN... 69 2e-10 tr|B5BV15|B5BV15_DRONO Ring finger protein 20 (Fragment) OS=Drom... 68 3e-10 tr|Q4RZA9|Q4RZA9_TETNG Chromosome 1 SCAF14944, whole genome shot... 67 6e-10 tr|A7SV65|A7SV65_NEMVE Predicted protein OS=Nematostella vectens... 65 2e-09 tr|Q7T178|Q7T178_DANRE Novel protein (Zgc:171713) (Fragment) OS=... 63 6e-09 tr|B0W6W5|B0W6W5_CULQU Putative uncharacterized protein OS=Culex... 62 1e-08 tr|B4E313|B4E313_HUMAN cDNA FLJ59150, highly similar to Ubiquiti... 62 1e-08 tr|B4DMM1|B4DMM1_HUMAN cDNA FLJ58265, highly similar to Ubiquiti... 62 1e-08 tr|B4DFU2|B4DFU2_HUMAN cDNA FLJ58158, highly similar to Ubiquiti... 62 1e-08 tr|B4DEN2|B4DEN2_HUMAN cDNA FLJ58523, highly similar to Ubiquiti... 62 1e-08 tr|Q17ND4|Q17ND4_AEDAE Putative uncharacterized protein OS=Aedes... 62 2e-08 tr|Q7PF85|Q7PF85_ANOGA AGAP007335-PA OS=Anopheles gambiae GN=AGA... 60 4e-08 tr|B4PIX4|B4PIX4_DROYA GE20535 OS=Drosophila yakuba GN=GE20535 P... 60 7e-08
>tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_208452 PE=4 SV=1 Length = 846
Score = 120 bits (300), Expect = 4e-26 Identities = 59/139 (42%), Positives = 91/139 (65%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD+YN +LV+ES+K+KQL ++L E+Q L +QHA E K RV+RLE Q + +++Q Sbjct: 628 RDDYNTQLVAESLKAKQLQASLQSEKQILASRVQHANATAEHHKQRVSRLEDQARSYIEQ 687
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 + ++GRQ+ ++E L+R AE + E +S K LEAT K I R K+ E QLDKE Sbjct: 688 IGKVMDNGRQHTLSMETLRRKTAETEKELLSVKTSLEATNKRIEDRGHKLAEAQQQLDKE 747
Query: 75 KLAKKKVQEDIAHLKSKLA 19 + K++VQ+++ L +KL+ Sbjct: 748 RFEKRRVQDELEALNNKLS 766
>tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152947 PE=4 SV=1 Length = 852
Score = 109 bits (272), Expect = 8e-23 Identities = 58/139 (41%), Positives = 85/139 (61%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD+YN +LV+ES K+KQL S L E++ L +QHA + K V RLE Q++ +L+Q Sbjct: 634 RDDYNTQLVAESQKAKQLQSFLEAEKKVLASRVQHAIASADPLKQHVNRLEDQIRSYLEQ 693
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 +D RQ+ LE LK E + + VSTKA LEA + I R +K+ E QLDKE Sbjct: 694 TGKVMDDSRQHILALEALKHKTVEIEKQLVSTKAALEAANRRIEGRGQKLVEAQQQLDKE 753
Query: 75 KLAKKKVQEDIAHLKSKLA 19 + K++VQ+++ L +K+A Sbjct: 754 RFEKRRVQDELEALNNKVA 772
>tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222810 PE=4 SV=1 Length = 844
Score = 100 bits (249), Expect = 4e-20 Identities = 52/139 (37%), Positives = 85/139 (61%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RDEYN +L+SES+K+KQL ++L E+Q L +QHA + K R+ARLE+Q ++ + + Sbjct: 626 RDEYNAQLMSESLKAKQLQASLQAEKQVLNARMQHANATADLHKQRIARLEEQARMLIHE 685
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 L + ++ RQ +S +E KR E + E S + L A + + R +K+ + QL+KE Sbjct: 686 LAKATDESRQQSSAMESAKRKAVEMEKELSSANSALAAANQVLEERGQKLLNVKLQLEKE 745
Query: 75 KLAKKKVQEDIAHLKSKLA 19 + K++VQE++ L K A Sbjct: 746 RFEKRRVQEELDVLNVKSA 764
>tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024749001 PE=4 SV=1 Length = 1652
Score = 94.7 bits (234), Expect = 2e-18 Identities = 53/139 (38%), Positives = 85/139 (61%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD+YNIKLVSESVK+KQ+ S L E+QAL + +Q N E K R+A+ E+Q+K+ L + Sbjct: 1435 RDDYNIKLVSESVKTKQMQSFLLSEKQALAKQLQQVNNALESLKMRIAQSEEQMKVCLAE 1494
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 ++ R A +LE K LA+A+ E K+ L +++KE + K E+ +LD E Sbjct: 1495 ALKYTQEDRHLAVSLETAKWELADAEKELKWLKSALASSEKEYEQIQRKKEEVQMELDNE 1554
Query: 75 KLAKKKVQEDIAHLKSKLA 19 + + K++E++ L ++A Sbjct: 1555 RSERLKLEEELKELNREIA 1573
>tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115788 PE=4 SV=1 Length = 884
Score = 90.5 bits (223), Expect = 4e-17 Identities = 47/138 (34%), Positives = 78/138 (56%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RDEYN +L+SES+K++QL L E+Q L +QHA + + K R+ LE+Q + Sbjct: 666 RDEYNSQLMSESLKARQLQFPLQAEKQVLDADMQHANSDADLHKQRITYLEEQASTFIAH 725
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 L + ++ RQ +S +E KR EA+ + S K L+A K + R + + QL+KE Sbjct: 726 LEKATDENRQQSSAMESAKRKAVEAEKQLSSVKLALDAAHKLLEERGQNFLNVNLQLEKE 785
Query: 75 KLAKKKVQEDIAHLKSKL 22 + K++ +E++ L K+ Sbjct: 786 RFNKRRAREELEVLNMKI 803
>tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_144430 PE=4 SV=1 Length = 884
Score = 85.9 bits (211), Expect = 9e-16 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 7/149 (4%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RDEYN +L+S+S+K+KQL ++L E+Q L +QH + K VAR+E Q + + + Sbjct: 664 RDEYNAQLMSDSLKAKQLQTSLQAEKQVLNARMQHVIARADLHKQHVARIEDQARAFIHE 723
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 + ++ R +S +E KR E + E S K+ L A K + R +++ + QL KE Sbjct: 724 HGKAIDESRHQSSAMESAKRKAVEMEKELASAKSALAAADKLLEERGQRLLNVNLQLGKE 783
Query: 75 --KLAKKKVQEDIAHLKSKLA-----HDI 10 + K++ QED+ + K A HD+ Sbjct: 784 SFRFEKRRAQEDLKIVNMKTARLHSLHDV 812
>tr|B3H5S6|B3H5S6_ARATH Uncharacterized protein At1g55255.2 OS=Arabidopsis thaliana GN=At1g55255 PE=4 SV=1 Length = 422
Score = 80.1 bits (196), Expect = 5e-14 Identities = 45/138 (32%), Positives = 76/138 (55%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD+YNIKLVSESVK+K ++T E+Q + + + E K R+A E+Q+K + Sbjct: 205 RDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSE 264
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 ++ R +LE K +A+AD E K+ + +++KE + +I +LD E Sbjct: 265 AYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDE 324
Query: 75 KLAKKKVQEDIAHLKSKL 22 + KKK++E++ L +L Sbjct: 325 RREKKKLEEELMELNKEL 342
>tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019139001 PE=4 SV=1 Length = 878
Score = 79.7 bits (195), Expect = 7e-14 Identities = 44/137 (32%), Positives = 75/137 (54%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD+YNIKLV E V+S+QL +L E+Q + Q AT + R+E Q+K+ DQ Sbjct: 660 RDDYNIKLVLEGVRSRQLQDSLLMEKQTMERGFQRATTSLGFFDMKAGRIEDQLKMCSDQ 719
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 + AED Q+ TL ++ L + + LE +Q ++ + +GE+ +L+KE Sbjct: 720 VQKLAEDRLQSLGTLANFQKRLLDVTRLSQQARESLEESQSKVDKSRVSLGELQIELEKE 779
Query: 75 KLAKKKVQEDIAHLKSK 25 + KK+ +E++ ++ K Sbjct: 780 RFEKKRTEEELEVVRRK 796
>tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_34687 PE=4 SV=1 Length = 844
Score = 78.2 bits (191), Expect = 2e-13 Identities = 40/139 (28%), Positives = 83/139 (59%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD++NIKLVS+SVK KQ + +L E+ L + +QH + E K ++ E+Q+K ++ Q Sbjct: 627 RDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQ 686
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 S+ + R A +LE +++A+ E ++ + +KE ++K+ E+ +L++E Sbjct: 687 AMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERE 746
Query: 75 KLAKKKVQEDIAHLKSKLA 19 + + K++E+ +K++++ Sbjct: 747 RNERIKLEEEYEEVKNEVS 765
>tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 844
Score = 78.2 bits (191), Expect = 2e-13 Identities = 40/139 (28%), Positives = 83/139 (59%) Frame = -2
Query: 435 RDEYNIKLVSESVKSKQLHSTLNEERQALPEYIQHATNFGEGQKPRVARLEQQVKLHLDQ 256 RD++NIKLVS+SVK KQ + +L E+ L + +QH + E K ++ E+Q+K ++ Q Sbjct: 627 RDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQ 686
Query: 255 LNTSAEDGRQNASTLEVLKRSLAEADNECVSTKAFLEATQKEIAHRKEKVGEILTQLDKE 76 S+ + R A +LE +++A+ E ++ + +KE ++K+ E+ +L++E Sbjct: 687 AMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERE 746
Query: 75 KLAKKKVQEDIAHLKSKLA 19 + + K++E+ +K++++ Sbjct: 747 RNERIKLEEEYEEVKNEVS 765
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