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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921828
Clone id YMU001_000154_F06
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCCGCAGGGCCAGGTTAGGTTTGATGGAAGATAAGCAGGGTTGGTTTGCGTGGCTTTTT
GCTTTGGAGGAGCTATAGGTGGATTGGCAGGTGTTGCATATAGCGTTGCTGTCAATGATT
GTACGGATTTTTTGTTGTTTCAAGTTTAGGTTCTCGGATGTCTTATCTCATATGCTTGTT
TAGGTGTGCAGGTTTCAGGTTTCCCTGTACTCTGCTGAGCCTCAAGTGGTGCTAGTGCTA
ACAACATCTTTGTTTACAGGTGGAGTTCTTATTGACAAGTGCTGCTGCAGGCAAGGATGC
AGATTAATCTTGAAGTGGCTTCCGCACGGTCTCACATGCTTAGTACAGGGAACCTGTTAA
TACTTGGCATTGTGCAGGCGTCTCTTCAACTTCGCTCCTAACCGATATATTCTGCAGGAT
CTTTGCTTTTGTTCTACAGTCTAGGTGGATTCTTCAAGGTCTTCAAAGAACATTGGCTGA
TGTAAATGGAGTTTTCAGCTTTTGCTTGAAGTGATGAACCTTGCCCTGTATGAAAGCTTG
CTTTGGTTGTG
■■Homology search results ■■ -
sp_hit_id Q54JH8
Definition sp|Q54JH8|Y7752_DICDI Putative uncharacterized protein DDB_G0288043 OS=Dictyostelium discoideum
Align length 78
Score (bit) 33.5
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921828|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_F06.
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54JH8|Y7752_DICDI Putative uncharacterized protein DDB_G0288...    33   0.70 
sp|P80018|GLBC_CAUAR Globin C, coelomic OS=Caudina arenicola PE=...    30   7.8  

>sp|Q54JH8|Y7752_DICDI Putative uncharacterized protein DDB_G0288043
           OS=Dictyostelium discoideum GN=DDB_G0288043 PE=4 SV=1
          Length = 346

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = -2

Query: 232 APLEAQQSTGKPETCTPKQAYEIRHPRT*T*NNKKSVQSLTATLYATPANP--PIAPP-- 65
           +P  +   +G P  C+PK  ++         NN++ +Q+ +  L ++P++P  P +PP  
Sbjct: 33  SPKTSSPKSGSPRACSPKLKHK---------NNQQLLQNDSINLSSSPSSPSSPSSPPMV 83

Query: 64  ---KQKATQTNPAYLPSN 20
                K T T  + +PSN
Sbjct: 84  GKVTVKKTHTKSSVVPSN 101


>sp|P80018|GLBC_CAUAR Globin C, coelomic OS=Caudina arenicola PE=1
           SV=3
          Length = 159

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 362 TWHCAGVSSTSLLTDIFCRIFAF 430
           TWH    + TS +TD+F RIFA+
Sbjct: 24  TWHQLMRNKTSFVTDVFIRIFAY 46
tr_hit_id B6NZ87
Definition tr|B6NZ87|B6NZ87_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 34
Score (bit) 38.1
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921828|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_F06.
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6NZ87|B6NZ87_BRAFL Putative uncharacterized protein OS=Branc...    38   0.31 
tr|A8PTF7|A8PTF7_MALGO Putative uncharacterized protein OS=Malas...    35   3.4  
tr|B6MU22|B6MU22_BRAFL Putative uncharacterized protein OS=Branc...    33   7.7  

>tr|B6NZ87|B6NZ87_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_100878 PE=4 SV=1
          Length = 172

 Score = 38.1 bits (87), Expect = 0.31
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 109 ATLYATPANPPIAPPKQKATQTNPAYLPSNLTWP 8
           ATL  +P  PP+ PP +KAT T  A    +LTWP
Sbjct: 5   ATLTHSPPAPPVPPPARKATTTRSAARGESLTWP 38


>tr|A8PTF7|A8PTF7_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_0417 PE=4 SV=1
          Length = 347

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 347 REPVNTWHCAGVSSTSLLTDIFCRIFAFVLQSRWILQGLQRTLADVNGV 493
           R+P ++WH A  +  S +  IF R+F+ +   RW +  L+  LAD+  V
Sbjct: 10  RKPADSWHLAAEAIQSAV-GIFLRVFSSLAPGRWAIPVLRALLADLRWV 57


>tr|B6MU22|B6MU22_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_86715 PE=4 SV=1
          Length = 963

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -2

Query: 199 PETCTPKQAYEIRHPRT*T*NNKKSVQSLTATLYATPANPPIAPPKQKATQTNPAYLPSN 20
           P  C+P   +  RH RT    +  +VQ+ TAT+  + A   + P       +     PS 
Sbjct: 94  PRLCSPAHDFAARHRRTTLQPSTATVQASTATVQPSTARTALPPSTATVHSSTTTVQPST 153

Query: 19  LTWPCG 2
            T P G
Sbjct: 154 TTVPPG 159