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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921832
Clone id YMU001_000154_F10
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGCAAACACCGCAGGTGGAAAGGGTAAGTAGGCAGGGAGGAAAGGCCACAATTGAAGCC
AAACCATAAGAAAAAGGTAGGACTTAAGAAGTCTGTTTGGCTAAAAGGCTTAGGAATGAT
CCCACCCAACACCAGTCTAAAACAGGGACTTGATGATGGTACATAAACCCAGCCCTGCAC
CATGAACCTCATCAGATTACAAAATCAACCGGATGACTACATCTACTAACTCGAGGTTTT
GTCCAGACTTTATCTTACAGATAATCATATATTTACTCAATCCATAAACCTTTCCCTGCC
CCTTTCCCTTTCTCTTGCGTATCCTCCATCCCTATCCCTGTCTCTTTCTGCCTCTCTAAA
GCGGTCTCTTTCTTTACCCCTCCCTCTATCTCGATCTCTGTCACGATCTCTCTCTCTGCT
TCTCTCCCTTTCTCGGTAATCATCTCGA
■■Homology search results ■■ -
sp_hit_id P23975
Definition sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter OS=Homo sapiens
Align length 53
Score (bit) 31.2
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921832|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_F10.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter...    31   2.1  
sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid...    30   4.7  

>sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter
           OS=Homo sapiens GN=SLC6A2 PE=1 SV=1
          Length = 617

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 171 WVYVPSSSPCFRLVLGGIIPKPFSQTDFLSPTFFLWFGFNCGLSSLPTYPFHL 13
           W +V  +   F +V+  I  KP +  D++ P +  W G+   LSS+   P ++
Sbjct: 521 WKFVSPAFLLFVVVVSIINFKPLTYDDYIFPPWANWVGWGIALSSMVLVPIYV 573


>sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid
           transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1
          Length = 465

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 123 GIIP-KPFSQTDFLSPTFFLWFGFNCGLSSLPTY 25
           GIIP +P S TD  +    + FGF C +SS+P +
Sbjct: 231 GIIPVRPASWTDVFNAMPTICFGFQCHVSSVPVF 264
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921832|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_F10.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******