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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921838
Clone id YMU001_000154_G04
Library
Length 273
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGTGAATAATATAGGATTCAACAAAAAGCAACATTAGTTTAGACGGTCTTGTACCTTAG
TAGCAGCGTAAAGACTTTCTAGGTGGTTTGTCCTTTGAGTCCAGGCCATATACACTACTT
GACGAGGCGTACATAGTGGTAGGCTACGGGTTGCTGGTCTTGCATTGTTCAAGCAGAGTG
ACAAAGCCACCATTGAACCCCAATGAGTGAGAAGACATGCTACTGAATCCACATGGAGGA
AAAACCTGTCTCACTGCAGCACCTGCTGTTGCT
■■Homology search results ■■ -
sp_hit_id O81312
Definition sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana
Align length 32
Score (bit) 46.6
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921838|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G04.
         (273 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsi...    47   4e-05
sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsi...    47   4e-05
sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsi...    45   1e-04
sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsi...    44   3e-04
sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsi...    43   3e-04
sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsi...    42   0.001
sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'r...    32   0.76 

>sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis
           thaliana GN=GAE3 PE=2 SV=1
          Length = 430

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           GFV LLE CK++NP P  ++ASSSSVYGL++K
Sbjct: 195 GFVNLLEVCKSANPQPAIVWASSSSVYGLNTK 226


>sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis
           thaliana GN=GAE2 PE=2 SV=1
          Length = 434

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           GFV LLE CK++NP P  ++ASSSSVYGL++K
Sbjct: 196 GFVNLLEVCKSANPQPAIVWASSSSVYGLNTK 227


>sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis
           thaliana GN=GAE4 PE=1 SV=1
          Length = 437

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           GFV LLE CK+ NP P  ++ASSSSVYGL++K
Sbjct: 201 GFVNLLEICKSVNPQPAIVWASSSSVYGLNTK 232


>sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis
           thaliana GN=GAE5 PE=2 SV=1
          Length = 436

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           GFV LLE  K++NP P  ++ASSSSVYGL+SK
Sbjct: 200 GFVNLLEVSKSANPQPAIVWASSSSVYGLNSK 231


>sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis
           thaliana GN=GAE1 PE=1 SV=1
          Length = 429

 Score = 43.1 bits (100), Expect(2) = 3e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G V LLE CK +NP P  ++ASSSSVYGL+ K
Sbjct: 192 GLVNLLEICKAANPQPAIVWASSSSVYGLNEK 223



 Score = 20.4 bits (41), Expect(2) = 3e-04
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 TQRTNHLESLYAATK 56
           + RT+   SLYAATK
Sbjct: 229 SDRTDQPASLYAATK 243


>sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis
           thaliana GN=GAE6 PE=1 SV=1
          Length = 460

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSKD 90
           GFV LLE  K +NP P  ++ASSSSVYGL++++
Sbjct: 216 GFVNLLEVAKAANPQPAIVWASSSSVYGLNTEN 248


>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld
           5'region OS=Escherichia coli O111:H- PE=3 SV=1
          Length = 334

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           GF+ +LE C+  N     +YASSSSVYGL+ K
Sbjct: 105 GFLNILEGCR-HNKIQHLLYASSSSVYGLNRK 135
tr_hit_id A7QGQ6
Definition tr|A7QGQ6|A7QGQ6_VITVI Chromosome chr16 scaffold_94, whole genome shotgun sequence OS=Vitis vinifera
Align length 32
Score (bit) 44.7
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921838|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G04.
         (273 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QGQ6|A7QGQ6_VITVI Chromosome chr16 scaffold_94, whole genom...    45   4e-04
tr|A9S6M5|A9S6M5_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A9SSQ9|A9SSQ9_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|B8LKW2|B8LKW2_PICSI Putative uncharacterized protein OS=Picea...    45   0.001
tr|Q6K9M5|Q6K9M5_ORYSJ Os02g0791500 protein OS=Oryza sativa subs...    44   0.003
tr|A2XAG1|A2XAG1_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A7PYE9|A7PYE9_VITVI Chromosome chr15 scaffold_37, whole genom...    44   0.003
tr|A7PYE8|A7PYE8_VITVI Chromosome chr15 scaffold_37, whole genom...    44   0.003
tr|A7PYE7|A7PYE7_VITVI Chromosome chr15 scaffold_37, whole genom...    44   0.003
tr|A5C3Y4|A5C3Y4_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|Q304Y2|Q304Y2_MAIZE UDP-glucuronic acid 4-epimerase OS=Zea ma...    44   0.005
tr|Q2PEY6|Q2PEY6_TRIPR Putative NAD dependent epimerase OS=Trifo...    44   0.005
tr|B6SI92|B6SI92_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005
tr|B4F9K7|B4F9K7_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005
tr|A7QYU1|A7QYU1_VITVI Chromosome undetermined scaffold_254, who...    44   0.005
tr|A7QVA7|A7QVA7_VITVI Chromosome chr2 scaffold_187, whole genom...    44   0.005
tr|A5B5D4|A5B5D4_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A9TFC1|A9TFC1_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.006
tr|Q2MJA7|Q2MJA7_ORYSJ Os03g0249500 protein OS=Oryza sativa subs...    43   0.007
tr|A9S3V6|A9S3V6_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.007
tr|Q1M2Y4|Q1M2Y4_PLAAC Nucleotide sugar epimerase-like protein (...    42   0.008
tr|A9SLN5|A9SLN5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|Q01DJ6|Q01DJ6_OSTTA Putative nucleotide sugar epimerase (ISS)...    41   0.012
tr|A9RIM4|A9RIM4_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9RZV8|A9RZV8_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9RD94|A9RD94_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9P9K8|A9P9K8_POPTR Putative uncharacterized protein OS=Popul...    41   0.026
tr|Q69KM5|Q69KM5_ORYSJ Putative uridine diphosphate galacturonat...    41   0.034
tr|Q0DDZ4|Q0DDZ4_ORYSJ Os06g0187200 protein (Fragment) OS=Oryza ...    41   0.034
tr|A9NXH8|A9NXH8_PICSI Putative uncharacterized protein OS=Picea...    41   0.034

>tr|A7QGQ6|A7QGQ6_VITVI Chromosome chr16 scaffold_94, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038436001
           PE=4 SV=1
          Length = 400

 Score = 44.7 bits (104), Expect(2) = 4e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           GFV LLE CK + P P  ++ASSSSVYGL+SK
Sbjct: 175 GFVNLLEVCKEAKPQPAIIWASSSSVYGLNSK 206



 Score = 21.9 bits (45), Expect(2) = 4e-04
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 TQRTNHLESLYAATK 56
           T RT+   SLYAATK
Sbjct: 212 TDRTDQPASLYAATK 226


>tr|A9S6M5|A9S6M5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163131 PE=4 SV=1
          Length = 446

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G VTL E CK +NP P  ++ASSSSVYGL+SK
Sbjct: 209 GLVTLFEACKNANPQPAVVWASSSSVYGLNSK 240


>tr|A9SSQ9|A9SSQ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166362 PE=4 SV=1
          Length = 450

 Score = 45.1 bits (105), Expect(2) = 0.001
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G VTL E CK +NP P  ++ASSSSVYGL++K
Sbjct: 211 GLVTLFEACKNANPQPAVVWASSSSVYGLNTK 242



 Score = 20.4 bits (41), Expect(2) = 0.001
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 TQRTNHLESLYAATK 56
           + RT+   SLYAATK
Sbjct: 248 SDRTDQPASLYAATK 262


>tr|B8LKW2|B8LKW2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 437

 Score = 44.7 bits (104), Expect(2) = 0.001
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G VT+ E CK++NP P  ++ASSSSVYGL+SK
Sbjct: 201 GLVTIFEICKSANPQPAIVWASSSSVYGLNSK 232



 Score = 20.4 bits (41), Expect(2) = 0.001
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 TQRTNHLESLYAATK 56
           + RT+   SLYAATK
Sbjct: 238 SDRTDQPASLYAATK 252


>tr|Q6K9M5|Q6K9M5_ORYSJ Os02g0791500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1249_F12.2 PE=2 SV=1
          Length = 437

 Score = 43.5 bits (101), Expect(2) = 0.003
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G VTLLE CK ++P P  ++ASSSSVYGL+ K
Sbjct: 201 GLVTLLEACKDADPQPAIVWASSSSVYGLNDK 232



 Score = 20.4 bits (41), Expect(2) = 0.003
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 TQRTNHLESLYAATK 56
           + RT+   SLYAATK
Sbjct: 238 SDRTDQPASLYAATK 252


>tr|A2XAG1|A2XAG1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09239 PE=4 SV=1
          Length = 437

 Score = 43.5 bits (101), Expect(2) = 0.003
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G VTLLE CK ++P P  ++ASSSSVYGL+ K
Sbjct: 201 GLVTLLEACKDADPQPAIVWASSSSVYGLNDK 232



 Score = 20.4 bits (41), Expect(2) = 0.003
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 TQRTNHLESLYAATK 56
           + RT+   SLYAATK
Sbjct: 238 SDRTDQPASLYAATK 252


>tr|A7PYE9|A7PYE9_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026412001
           PE=4 SV=1
          Length = 418

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G V LLE CK++NP P  ++ASSSSVYGL++K
Sbjct: 192 GLVNLLEVCKSANPQPAIVWASSSSVYGLNTK 223


>tr|A7PYE8|A7PYE8_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026411001
           PE=4 SV=1
          Length = 418

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G V LLE CK++NP P  ++ASSSSVYGL++K
Sbjct: 192 GLVNLLEVCKSANPQPAIVWASSSSVYGLNTK 223


>tr|A7PYE7|A7PYE7_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026410001
           PE=4 SV=1
          Length = 418

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G V LLE CK++NP P  ++ASSSSVYGL++K
Sbjct: 192 GLVNLLEVCKSANPQPAIVWASSSSVYGLNTK 223


>tr|A5C3Y4|A5C3Y4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004388 PE=4 SV=1
          Length = 427

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -2

Query: 188 GFVTLLEQCKTSNP*PTTMYASSSSVYGLDSK 93
           G V LLE CK++NP P  ++ASSSSVYGL++K
Sbjct: 192 GLVNLLEVCKSANPQPAIVWASSSSVYGLNTK 223