BP921840
Clone id YMU001_000154_G06
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTTTTTTGAAGCTAAAGGTGTTGCATTTTATGGCTTGGCTTAAGCCAT
TATCGTTATCATTACCAAATTCCAAGATTACAAAGGTGAGCATACTATGTACAAGCGATC
CATGGATGTTAATTGCACGACTGACTATTAACTAAATACAAATACATTATTTTTGGTGTT
ATTAAGGCAACCCCTTGTACTAGGCTACCTTAAGCTCAGTTGAGAGGGAAACAAGAAGTA
GGAGAGCCAAGATACCCAGAGATGTTCTCCACTCCGAAACCTAGAGCCCTTTCATAGCTG
GGGCAGACGGAGGCAGTGGCGCTGAGAACGAGAGGCGCCTCCTTCGACAGCACAAGGCTG
TCAGTTCGGCCGAACCCCTTGCAGCCGCTGGCACATTGACAGTTTGCGCCGAACCCACAG
TTACCATTGCAGCACGACATCTTATCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
CTCTCTCTCT
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 61
Score (bit) 34.7
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921840|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G06.
(471 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg... 35 0.22
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu... 33 0.48
sp|B0S9U5|DDL_LEPBA D-alanine--D-alanine ligase OS=Leptospira bi... 31 3.1
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT... 30 4.1
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien... 30 4.1
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil... 30 4.1
sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA P... 30 6.9
sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain C... 30 6.9

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
norvegicus GN=Gata4 PE=1 SV=1
Length = 440

Score = 34.7 bits (78), Expect = 0.22
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
A L G+++ G P + +S+P P ++ +G + A A FDS L P P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAR 200

Query: 375 H 377
H
Sbjct: 201 H 201


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
GN=Gata4 PE=1 SV=3
Length = 440

Score = 33.5 bits (75), Expect = 0.48
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
A L G+++ G P + +S+P P ++ +G + A A FDS L P P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 375 H 377
H
Sbjct: 201 H 201


>sp|B0S9U5|DDL_LEPBA D-alanine--D-alanine ligase OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ddl
PE=3 SV=1
Length = 349

Score = 30.8 bits (68), Expect = 3.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Frame = -3

Query: 367 GCKGFGRTDSLVLSKEAPLVLSAT-------ASVCPSYERALGFGVENISGYL 230
GCKG+ RTD ++S P VL S+ P +ALG ++++ +L
Sbjct: 292 GCKGYSRTD-FIISDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWL 343


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
Length = 1250

Score = 30.4 bits (67), Expect = 4.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3

Query: 222 GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNP-LQPLAH*QFAPNP 398
GEP TP+P+ +S T+ LR G ++L+ RP P QPL + P P
Sbjct: 975 GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 399 QLP 407
P
Sbjct: 1033 AAP 1035


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
GN=GATA4 PE=1 SV=2
Length = 442

Score = 30.4 bits (67), Expect = 4.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
A L G+++ G + +S+P P ++ +G + A A FDS L P P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
familiaris GN=GATA4 PE=2 SV=1
Length = 442

Score = 30.4 bits (67), Expect = 4.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
A L G+++ G + +S+P P ++ +G + A A FDS L P P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200


>sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA PE=3
SV=2
Length = 1249

Score = 29.6 bits (65), Expect = 6.9
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3

Query: 222 GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNP-LQPLAH*QFAPNP 398
GEP TP+P+ +S T+ LR G ++L+ RP P QPL + P P
Sbjct: 975 GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 399 QLP 407
P
Sbjct: 1033 AEP 1035


>sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain CEA10
/ CBS 144.89 / FGSC A1163) GN=myoA PE=3 SV=2
Length = 1249

Score = 29.6 bits (65), Expect = 6.9
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3

Query: 222 GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNP-LQPLAH*QFAPNP 398
GEP TP+P+ +S T+ LR G ++L+ RP P QPL + P P
Sbjct: 975 GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 399 QLP 407
P
Sbjct: 1033 AEP 1035


tr_hit_id B7DJV4
Definition tr|B7DJV4|B7DJV4_DESSA Cytochrome bd-type quinol oxidase subunit 1-like protein OS=Desulfovibrio salexigens DSM 2638
Align length 40
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921840|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G06.
(471 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7DJV4|B7DJV4_DESSA Cytochrome bd-type quinol oxidase subunit... 35 1.4
tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.2
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul... 33 5.5
tr|Q01AR0|Q01AR0_OSTTA Nuclear pore complex, rNpl4 component (Sc... 33 5.5
tr|Q0S4M4|Q0S4M4_RHOSR Possible mannuronan epimerase OS=Rhodococ... 33 7.1
tr|Q4P9F9|Q4P9F9_USTMA Putative uncharacterized protein OS=Ustil... 33 7.1

>tr|B7DJV4|B7DJV4_DESSA Cytochrome bd-type quinol oxidase subunit
1-like protein OS=Desulfovibrio salexigens DSM 2638
GN=DesalDRAFT_3195 PE=4 SV=1
Length = 821

Score = 35.4 bits (80), Expect = 1.4
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2

Query: 302 AENERRLLRQHKAVSSAEPLAAAGTLTVCAEPTVTIAARH 421
A NER LR + + A+P+ AAGT TVC E + A H
Sbjct: 775 AANERDNLRPLQYMGEAQPIGAAGTCTVCHEDDMGYPAHH 814


>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05418 PE=4 SV=1
Length = 502

Score = 33.9 bits (76), Expect = 4.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3

Query: 354 NPLQPLAH*QFAPNPQLPLQHDI 422
+P QPL H Q P+PQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
GN=Gata4 PE=2 SV=1
Length = 442

Score = 33.5 bits (75), Expect = 5.5
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
A L G+++ G P + +S+P P ++ +G + A A FDS L P P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 375 H 377
H
Sbjct: 201 H 201


>tr|Q01AR0|Q01AR0_OSTTA Nuclear pore complex, rNpl4 component (Sc
Npl4) (ISS) OS=Ostreococcus tauri GN=Ot04g03400 PE=4
SV=1
Length = 412

Score = 33.5 bits (75), Expect = 5.5
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2

Query: 206 RETRSRRAKIPRD---------VLHSET*SPFIAGADGGSGAENERRLLRQHKAVSSAEP 358
++ R K+PRD VL S+ S F+ +D G E+ ++Q+ A+ A
Sbjct: 27 KDAIERELKVPRDDQILSTSPDVLTSKDPSAFLDMSDDGDALESVG--VKQNGAIVHAR- 83

Query: 359 LAAAGTLTVCAEPTVTIAARH 421
TVC EPT TIAA H
Sbjct: 84 ------YTVCREPTKTIAATH 98


>tr|Q0S4M4|Q0S4M4_RHOSR Possible mannuronan epimerase OS=Rhodococcus
sp. (strain RHA1) GN=RHA1_ro05734 PE=4 SV=1
Length = 454

Score = 33.1 bits (74), Expect = 7.1
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2

Query: 308 NERRLLRQHKAVSSAEPLAAAGTLTVCAEPTVTIAARH 421
N RRLL + V++A PLAAA + EPTV + H
Sbjct: 7 NRRRLLARSLGVAAALPLAAAACTSSAEEPTVEFTSPH 44


>tr|Q4P9F9|Q4P9F9_USTMA Putative uncharacterized protein OS=Ustilago
maydis GN=UM03254.1 PE=4 SV=1
Length = 2102

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2

Query: 266 SPFIAGADGGSGAENERRLLRQHKAVSSAEPLAAAGTLTVCAEPTVTIAA 415
SP + A G + A N RR R A S PL+ +LT + PT AA
Sbjct: 842 SPPASSACGSTSASNSRRGSRSDSAASRLNPLSPRSSLTASSPPTAQQAA 891