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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921840
Clone id YMU001_000154_G06
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTTGAAGCTAAAGGTGTTGCATTTTATGGCTTGGCTTAAGCCAT
TATCGTTATCATTACCAAATTCCAAGATTACAAAGGTGAGCATACTATGTACAAGCGATC
CATGGATGTTAATTGCACGACTGACTATTAACTAAATACAAATACATTATTTTTGGTGTT
ATTAAGGCAACCCCTTGTACTAGGCTACCTTAAGCTCAGTTGAGAGGGAAACAAGAAGTA
GGAGAGCCAAGATACCCAGAGATGTTCTCCACTCCGAAACCTAGAGCCCTTTCATAGCTG
GGGCAGACGGAGGCAGTGGCGCTGAGAACGAGAGGCGCCTCCTTCGACAGCACAAGGCTG
TCAGTTCGGCCGAACCCCTTGCAGCCGCTGGCACATTGACAGTTTGCGCCGAACCCACAG
TTACCATTGCAGCACGACATCTTATCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
CTCTCTCTCT
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 61
Score (bit) 34.7
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921840|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G06.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    35   0.22 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.48 
sp|B0S9U5|DDL_LEPBA D-alanine--D-alanine ligase OS=Leptospira bi...    31   3.1  
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   4.1  
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    30   4.1  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    30   4.1  
sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA P...    30   6.9  
sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain C...    30   6.9  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAR 200

Query: 375 H 377
           H
Sbjct: 201 H 201


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 375 H 377
           H
Sbjct: 201 H 201


>sp|B0S9U5|DDL_LEPBA D-alanine--D-alanine ligase OS=Leptospira
           biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ddl
           PE=3 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -3

Query: 367 GCKGFGRTDSLVLSKEAPLVLSAT-------ASVCPSYERALGFGVENISGYL 230
           GCKG+ RTD  ++S   P VL           S+ P   +ALG  ++++  +L
Sbjct: 292 GCKGYSRTD-FIISDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWL 343


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 222  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNP-LQPLAH*QFAPNP 398
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 399  QLP 407
              P
Sbjct: 1033 AAP 1035


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200


>sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA PE=3
            SV=2
          Length = 1249

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 222  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNP-LQPLAH*QFAPNP 398
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 399  QLP 407
              P
Sbjct: 1033 AEP 1035


>sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain CEA10
            / CBS 144.89 / FGSC A1163) GN=myoA PE=3 SV=2
          Length = 1249

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 222  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNP-LQPLAH*QFAPNP 398
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 399  QLP 407
              P
Sbjct: 1033 AEP 1035
tr_hit_id B7DJV4
Definition tr|B7DJV4|B7DJV4_DESSA Cytochrome bd-type quinol oxidase subunit 1-like protein OS=Desulfovibrio salexigens DSM 2638
Align length 40
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921840|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G06.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7DJV4|B7DJV4_DESSA Cytochrome bd-type quinol oxidase subunit...    35   1.4  
tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   5.5  
tr|Q01AR0|Q01AR0_OSTTA Nuclear pore complex, rNpl4 component (Sc...    33   5.5  
tr|Q0S4M4|Q0S4M4_RHOSR Possible mannuronan epimerase OS=Rhodococ...    33   7.1  
tr|Q4P9F9|Q4P9F9_USTMA Putative uncharacterized protein OS=Ustil...    33   7.1  

>tr|B7DJV4|B7DJV4_DESSA Cytochrome bd-type quinol oxidase subunit
           1-like protein OS=Desulfovibrio salexigens DSM 2638
           GN=DesalDRAFT_3195 PE=4 SV=1
          Length = 821

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 302 AENERRLLRQHKAVSSAEPLAAAGTLTVCAEPTVTIAARH 421
           A NER  LR  + +  A+P+ AAGT TVC E  +   A H
Sbjct: 775 AANERDNLRPLQYMGEAQPIGAAGTCTVCHEDDMGYPAHH 814


>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 354 NPLQPLAH*QFAPNPQLPLQHDI 422
           +P QPL H Q  P+PQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 195 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPNPLQPLA 374
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 375 H 377
           H
Sbjct: 201 H 201


>tr|Q01AR0|Q01AR0_OSTTA Nuclear pore complex, rNpl4 component (Sc
           Npl4) (ISS) OS=Ostreococcus tauri GN=Ot04g03400 PE=4
           SV=1
          Length = 412

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +2

Query: 206 RETRSRRAKIPRD---------VLHSET*SPFIAGADGGSGAENERRLLRQHKAVSSAEP 358
           ++   R  K+PRD         VL S+  S F+  +D G   E+    ++Q+ A+  A  
Sbjct: 27  KDAIERELKVPRDDQILSTSPDVLTSKDPSAFLDMSDDGDALESVG--VKQNGAIVHAR- 83

Query: 359 LAAAGTLTVCAEPTVTIAARH 421
                  TVC EPT TIAA H
Sbjct: 84  ------YTVCREPTKTIAATH 98


>tr|Q0S4M4|Q0S4M4_RHOSR Possible mannuronan epimerase OS=Rhodococcus
           sp. (strain RHA1) GN=RHA1_ro05734 PE=4 SV=1
          Length = 454

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 308 NERRLLRQHKAVSSAEPLAAAGTLTVCAEPTVTIAARH 421
           N RRLL +   V++A PLAAA   +   EPTV   + H
Sbjct: 7   NRRRLLARSLGVAAALPLAAAACTSSAEEPTVEFTSPH 44


>tr|Q4P9F9|Q4P9F9_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM03254.1 PE=4 SV=1
          Length = 2102

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 266 SPFIAGADGGSGAENERRLLRQHKAVSSAEPLAAAGTLTVCAEPTVTIAA 415
           SP  + A G + A N RR  R   A S   PL+   +LT  + PT   AA
Sbjct: 842 SPPASSACGSTSASNSRRGSRSDSAASRLNPLSPRSSLTASSPPTAQQAA 891