NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921844
Clone id YMU001_000154_G10
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCTCCAATCGCCACAGCCTGTGCACAGCGTCATAAGCAACTCATTTAAATTAACAAATC
CGCCTACTTCTGCACTTAGGCTTCTAGCAGATGGACTGCCTCTGTGTGCTGCTTTTCTCC
ACGATTTCTTAGTCTCCCCATTTAAACTCCTAGCTCTACCATTATTCGTTGACGTATCCA
AAGGACTAGGCTTTCCAACATAGAGATCTGCATAGCCAGCTCTATCTTTAAACTCCTCCA
GTGATAATATGTCTATGCTGCTTGGTTCCGTGGGAGACTCGTAATTTAAAGGTAAGAGGC
CAAATTTCCTAGTTTGCTCCTGATCCTGCAATTTCCCCCCATTGTTAAAGCTGAAGTCAC
TAACGGCTCCAGCCGCAACACGCTCACTGACATGAGCAATCTTCAAAGGACCATCATGTG
CCTGAGAAGAAGTTTTCTGTACTCTCTCTTGCTTTGCCCAAAAAGCTCCTATGTTCTCCT
GCTCCAAGCACAGATCAACTTCACCAAAAGCAGGCACTGAGTTCC
■■Homology search results ■■ -
sp_hit_id P19414
Definition sp|P19414|ACON_YEAST Aconitate hydratase, mitochondrial OS=Saccharomyces cerevisiae
Align length 52
Score (bit) 33.5
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921844|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G10.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19414|ACON_YEAST Aconitate hydratase, mitochondrial OS=Sacch...    33   0.56 
sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sap...    33   0.73 
sp|A4WLK6|ILVC_PYRAR Ketol-acid reductoisomerase OS=Pyrobaculum ...    32   1.6  
sp|P36103|YKC3_YEAST Uncharacterized protein YKL023W OS=Saccharo...    31   2.8  
sp|A5GAW1|RL15_GEOUR 50S ribosomal protein L15 OS=Geobacter uran...    31   3.6  
sp|P75376|Y408_MYCPN Uncharacterized lipoprotein MPN_408 OS=Myco...    30   6.1  
sp|Q11QD1|RL15_CYTH3 50S ribosomal protein L15 OS=Cytophaga hutc...    30   6.1  
sp|P29698|ENTF_SHIFL Enterobactin synthetase component F OS=Shig...    30   8.0  
sp|P11454|ENTF_ECOLI Enterobactin synthetase component F OS=Esch...    30   8.0  

>sp|P19414|ACON_YEAST Aconitate hydratase, mitochondrial
           OS=Saccharomyces cerevisiae GN=ACO1 PE=1 SV=2
          Length = 778

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 284 RKFGLLPLNYESPTEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGR 129
           +K GLLPLN+++P +    D ++ ++  D  G A+L  GKP  +     NG+
Sbjct: 697 KKQGLLPLNFKNPAD---YDKINPDDRIDILGLAELAPGKPVTMRVHPKNGK 745


>sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sapiens
            GN=DENND4A PE=1 SV=2
          Length = 1863

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
 Frame = -3

Query: 434  WAKQERVQKTSSQAHDGPLKIAHVSERVAAGAVSDFSFNNGGKLQDQEQTRKFGLLPLNY 255
            W K   V    +Q      K AH+S+   +G  SD  +N+  K    ++ R+      + 
Sbjct: 871  WTKVRNVVLGVTQFKRALKKHAHLSQTTLSGGQSDLGYNSLSK----DEVRRGDTSTEDI 926

Query: 254  ESPTEPSSIDILSLEEFKDRAGYADL-----YVGKPSPLD-TSTNNGRARSLNGETKKS 96
            +   +    D  SL E +   G AD      Y    S +  T T+N  A  ++GE+ +S
Sbjct: 927  QEEKDKKGSDCSSLSESESTKGSADCLPKLSYQNSSSIVRLTGTSNNSAGKISGESMES 985


>sp|A4WLK6|ILVC_PYRAR Ketol-acid reductoisomerase OS=Pyrobaculum
           arsenaticum (strain DSM 13514 / JCM 11321) GN=ilvC PE=3
           SV=1
          Length = 328

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = -3

Query: 215 LEEFKDRAGYADLYVGKPSPLDTSTNN----GRARSLNGETKKSWRKAAHRGSPSARSLS 48
           L    D A Y  L VG P  +D S         AR  +GE  K W    +RG P+ R L 
Sbjct: 248 LNGVSDTAKYGGLTVG-PKIIDESVKQRMREAAARVRSGEFAKEWVTEYNRGGPTLRKLM 306

Query: 47  AEV 39
            EV
Sbjct: 307 EEV 309


>sp|P36103|YKC3_YEAST Uncharacterized protein YKL023W
           OS=Saccharomyces cerevisiae GN=YKL023W PE=1 SV=1
          Length = 277

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
 Frame = -3

Query: 464 CLEQENIGAFWAKQERVQKTSSQAHDGPLKIAHVSERVAAGAVSD--------FSFNNGG 309
           C+      + W K +  ++T+ +       IA ++++    A  +             GG
Sbjct: 21  CVTDHEAYSNWLKNDNDERTAHEESSSQSTIAALNKKKQTEAAQEDIEELLNGLEGIIGG 80

Query: 308 ------KLQDQEQTRKFGLLPLNYESPTEPSSIDILSLEEFKDRAGYADLYVGKPSP-LD 150
                 K + + +T+K G  P      TE   I +L +E+F D + + D+    PSP LD
Sbjct: 81  ADPRNLKSKSKRKTKKGGSKPREENVNTE-KHIVMLEVEDFSDMSTHEDVNGASPSPNLD 139

Query: 149 TSTNNGRAR 123
            S  N + R
Sbjct: 140 RSKKNEKRR 148


>sp|A5GAW1|RL15_GEOUR 50S ribosomal protein L15 OS=Geobacter
           uraniireducens (strain Rf4) GN=rplO PE=3 SV=1
          Length = 146

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 30/133 (22%), Positives = 55/133 (41%)
 Frame = -3

Query: 425 QERVQKTSSQAHDGPLKIAHVSERVAAGAVSDFSFNNGGKLQDQEQTRKFGLLPLNYESP 246
           ++R+ + +   H       H  ++  +G      F  GG++    +  K G  PL   + 
Sbjct: 16  RKRIGRGTGSGHGKTATKGHKGQKARSGGSIKAGFE-GGQMPMHRRLPKRGFTPL---AK 71

Query: 245 TEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGRARSLNGETKKSWRKAAHRGSP 66
              S +++  L+ F +     D+   + S L  +  +G      GE  K+    AH+ S 
Sbjct: 72  KIYSVVNLSQLDVF-ETGSCVDIEAMQKSGLVKNVCDGIKILATGELTKALTVKAHKFSA 130

Query: 65  SARSLSAEVGGFV 27
           +AR+    VGG V
Sbjct: 131 TARNKITSVGGTV 143


>sp|P75376|Y408_MYCPN Uncharacterized lipoprotein MPN_408
           OS=Mycoplasma pneumoniae GN=MPN_408 PE=3 SV=1
          Length = 760

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 149 TSTNNGR-ARSLNGETKKSWRKAAHRGSPSARSLSAEVGGFVNLNELL 9
           TST+N + A + + E KK+W +    G+ + +  + +   F N NELL
Sbjct: 249 TSTDNSQDAENSDNEIKKTWGEYKEEGNHTLKGYTFKASVFENWNELL 296


>sp|Q11QD1|RL15_CYTH3 50S ribosomal protein L15 OS=Cytophaga
           hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplO
           PE=3 SV=1
          Length = 150

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
 Frame = -3

Query: 422 ERVQKTSSQAHDGPLKIAHVSERVAAGAVSDFSFNNGGKLQDQEQTRKFGLLPLNYESPT 243
           +R+ + +     G     H   +  +G  S   F  GG++  Q +  KFG  PLN     
Sbjct: 17  KRIGRGTGSGRGGTSTKGHKGAKSRSGYSSKIGFE-GGQMPLQRRLPKFGFKPLN---KI 72

Query: 242 EPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGRARSL-NGETKKSWRK-AAHRGS 69
           E   I++  L E  ++ G + +     +       N + + L  GE K    +  AH  S
Sbjct: 73  EFKPINLDELLELIEKTGASVIDTALMNQNGLIGKNDKVKVLARGEVKSIKAEIIAHAFS 132

Query: 68  PSARSLSAEVGGFVNL 21
            SA       GG V L
Sbjct: 133 ASASEAITNAGGKVTL 148


>sp|P29698|ENTF_SHIFL Enterobactin synthetase component F
           OS=Shigella flexneri GN=entF PE=3 SV=2
          Length = 1281

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 VKAEVTNGSSRNTLTDMSNLQRTIMCLRRSFLYSLLLCPKSSY 446
           +K E T+G  R   T +S +QRT + L  + L+   LC +  Y
Sbjct: 227 LKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDY 269


>sp|P11454|ENTF_ECOLI Enterobactin synthetase component F
           OS=Escherichia coli (strain K12) GN=entF PE=1 SV=3
          Length = 1293

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 VKAEVTNGSSRNTLTDMSNLQRTIMCLRRSFLYSLLLCPKSSY 446
           +K E T+G  R   T +S +QRT + L  + L+   LC +  Y
Sbjct: 227 LKLEFTDGEFRQLATQLSGVQRTDLALALAALWLGRLCNRMDY 269
tr_hit_id B4KKM6
Definition tr|B4KKM6|B4KKM6_DROMO GI17811 OS=Drosophila mojavensis
Align length 133
Score (bit) 39.7
E-value 0.08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921844|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_G10.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4KKM6|B4KKM6_DROMO GI17811 OS=Drosophila mojavensis GN=GI178...    40   0.080
tr|Q0U8R0|Q0U8R0_PHANO Putative uncharacterized protein OS=Phaeo...    37   0.39 
tr|B5VNK4|B5VNK4_YEAS6 YLR304Cp-like protein OS=Saccharomyces ce...    33   5.7  
tr|B3RHI2|B3RHI2_YEAS1 Aconitase OS=Saccharomyces cerevisiae (st...    33   5.7  
tr|A7A1I8|A7A1I8_YEAS7 Aconitase OS=Saccharomyces cerevisiae (st...    33   5.7  
tr|A1CR71|A1CR71_ASPCL Serine/threonine protein kinase, putative...    33   7.5  
tr|Q0YHL7|Q0YHL7_9DELT 50S ribosomal protein L15 OS=Geobacter sp...    33   9.8  
tr|A0D4C0|A0D4C0_PARTE Chromosome undetermined scaffold_37, whol...    33   9.8  

>tr|B4KKM6|B4KKM6_DROMO GI17811 OS=Drosophila mojavensis GN=GI17811
           PE=4 SV=1
          Length = 912

 Score = 39.7 bits (91), Expect = 0.080
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
 Frame = -3

Query: 425 QERVQKTSSQAHDGPLKIAHVSERVAAGAVSDFSFN---NGGKLQDQEQTRKFGLLPLNY 255
           +++ Q++ SQ+H  P K    ++ V        +FN   NG     Q+QT ++       
Sbjct: 407 KKQQQQSQSQSHQTPQKPGQKTQNVNHFKQKANAFNKFANGNHGHHQQQTSRYSRS--RS 464

Query: 254 ESPTEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGRARSLNGETKKSWRKAAHR 75
            SPT  +S    S  ++ +R  Y+       SP+  S +  R+RS +    +S  +++  
Sbjct: 465 RSPTSSTS----STSKYNNRKRYSR------SPVSRSRSRSRSRSRSRSRSQSRSRSSSA 514

Query: 74  GSPSARSLSAEVG 36
           GSP AR +  + G
Sbjct: 515 GSPPARKVLRKTG 527


>tr|Q0U8R0|Q0U8R0_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_11854 PE=4 SV=1
          Length = 132

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 350 QHAH*HEQSSKDHHVPEKKFSVLSLALPKKLLCSPAPSTDQLHQKQALS 496
           Q+ H H   S  H+VP   +  LS ++ + LL  PAPS    H  +AL+
Sbjct: 27  QYKHSHSAPSNSHNVPTSPYKYLSHSVSQLLLTQPAPSHQARHHLRALA 75


>tr|B5VNK4|B5VNK4_YEAS6 YLR304Cp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_123370 PE=4
           SV=1
          Length = 566

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 284 RKFGLLPLNYESPTEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGR 129
           +K GLLPLN+++P +    D ++ ++  D  G A+L  GKP  +     NG+
Sbjct: 485 KKQGLLPLNFKNPAD---YDKINPDDRIDILGLAELAPGKPVTMRVHPKNGK 533


>tr|B3RHI2|B3RHI2_YEAS1 Aconitase OS=Saccharomyces cerevisiae
           (strain RM11-1a) GN=SCRG_04252 PE=4 SV=1
          Length = 778

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 284 RKFGLLPLNYESPTEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGR 129
           +K GLLPLN+++P +    D ++ ++  D  G A+L  GKP  +     NG+
Sbjct: 697 KKQGLLPLNFKNPAD---YDKINPDDRIDILGLAELAPGKPVTMRVHPKNGK 745


>tr|A7A1I8|A7A1I8_YEAS7 Aconitase OS=Saccharomyces cerevisiae
           (strain YJM789) GN=ACO1 PE=4 SV=1
          Length = 778

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 284 RKFGLLPLNYESPTEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGR 129
           +K GLLPLN+++P +    D ++ ++  D  G A+L  GKP  +     NG+
Sbjct: 697 KKQGLLPLNFKNPAD---YDKINPDDRIDILGLAELAPGKPVTMRVHPKNGK 745


>tr|A1CR71|A1CR71_ASPCL Serine/threonine protein kinase, putative
           OS=Aspergillus clavatus GN=ACLA_028670 PE=4 SV=1
          Length = 1014

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = -3

Query: 251 SPT--EPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGRARSLNGETK-----KSW 93
           SPT  EPS I    L      +    L  G+PS LD     GR++S NG+T+        
Sbjct: 594 SPTRPEPSRISSDKLSSLSSTSSRPSLE-GRPSNLDVDDPVGRSKSANGKTRPVSVHAGS 652

Query: 92  RKAAHRGSPSARS 54
           R    RGS SARS
Sbjct: 653 RLEFSRGSGSARS 665


>tr|Q0YHL7|Q0YHL7_9DELT 50S ribosomal protein L15 OS=Geobacter sp.
           FRC-32 GN=GeobDRAFT_0705 PE=3 SV=1
          Length = 146

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 32/133 (24%), Positives = 55/133 (41%)
 Frame = -3

Query: 425 QERVQKTSSQAHDGPLKIAHVSERVAAGAVSDFSFNNGGKLQDQEQTRKFGLLPLNYESP 246
           ++R+ + +   H       H  ++  +G      F  GG++    +  K G  PL   S 
Sbjct: 16  RKRIGRGTGSGHGKTATKGHKGQKARSGGSVKAGFE-GGQMPMHRRLPKRGFKPL---SK 71

Query: 245 TEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNNGRARSLNGETKKSWRKAAHRGSP 66
              S +++  L+ F ++    D+   + S L     +G     +GE  KS    AH+ S 
Sbjct: 72  KVYSVVNLSQLDAF-EQGSCVDVEAMQKSGLVKDICDGIKILASGELTKSLTIKAHKFSA 130

Query: 65  SARSLSAEVGGFV 27
           +AR     VGG V
Sbjct: 131 AARDKITSVGGTV 143


>tr|A0D4C0|A0D4C0_PARTE Chromosome undetermined scaffold_37, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00013353001 PE=4 SV=1
          Length = 879

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 24/70 (34%), Positives = 31/70 (44%)
 Frame = -3

Query: 314  GGKLQDQEQTRKFGLLPLNYESPTEPSSIDILSLEEFKDRAGYADLYVGKPSPLDTSTNN 135
            G  LQD      +    LNYES  +    D+  LE+FK   GY  LY  +P      T  
Sbjct: 809  GKDLQDLLLQTYYRRFALNYESAAQCGGQDVF-LEQFKTTKGYKYLYSKQPIS-KNDTLQ 866

Query: 134  GRARSLNGET 105
             +  +LNG T
Sbjct: 867  SQIHNLNGTT 876