BP921849
Clone id YMU001_000154_H04
Library
Length 219
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGAATGTAATTGGAAGAAAGGACTTATCATCCTCTTGGGTTGTAGAGAAACCGGTCAAAC
TAAGCAAGGCTGAAGAAAATTCTTCTCAGGTAGTAGAGCTTGATACAGAAAGAAGGAGAA
CAGAGTGGGCAAGAGGACACAGTAACAAAGTATAACTAATAAAGGTAGTGCAGCTGAGAG
AATAGCAAGACTGCAAACACGACTTGAAAGAAAAGATAA
■■Homology search results ■■ -
sp_hit_id Q49X63
Definition sp|Q49X63|RNJ2_STAS1 Ribonuclease J 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
Align length 32
Score (bit) 28.9
E-value 8.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921849|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_H04.
(219 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q49X63|RNJ2_STAS1 Ribonuclease J 2 OS=Staphylococcus saprophy... 29 8.3
sp|P48725|PCNT_MOUSE Pericentrin OS=Mus musculus GN=Pcnt PE=2 SV=1 29 8.3

>sp|Q49X63|RNJ2_STAS1 Ribonuclease J 2 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1490 PE=3 SV=1
Length = 557

Score = 28.9 bits (63), Expect = 8.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3

Query: 36 WVVEKPVKLSKAEENSSQVVELDTERRRTEWA 131
+V E L++AEE ++VEL + +R EW+
Sbjct: 495 YVRESEALLNEAEEKVREIVELGLQEKRIEWS 526


>sp|P48725|PCNT_MOUSE Pericentrin OS=Mus musculus GN=Pcnt PE=2 SV=1
Length = 1920

Score = 28.9 bits (63), Expect = 8.3
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3

Query: 9 IGRKDLSSSWVVEKPVKLSKAEENSSQVVELDTERRRTEW 128
+G+ + S V + VKLSKAEE Q+ E + +++ EW
Sbjct: 464 LGQPKVQESLVEDCQVKLSKAEEKIQQMKE-EFQKKEAEW 502


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921849|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_H04.
(219 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******