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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921853
Clone id YMU001_000154_H10
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000154_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCGTGACCAGTTTATCAAATGCAAAACTGGTCCACATAATTCCTGAACTATGTGCCATGC
ATCACTTTTCTTTCTAATGTATTTTGATTTGTTGTGGACGACAACTTCTATAGCTATTTC
ATCTTTCTGTGGCCCACAATAGGCATTACCAAGATGGGCCATCCATGGCTCAGAAGCCAT
GTCAGATGGCACGATCGATACAGATTTTATTCGCCTGTCACCCCGAAGACTTATTTTCAT
GACACGAGGAATTATTTGGCTTCTTATGCGTGACAAGGCCTCTTCAACCGAAGGGGACTG
AGCAGTAGTTGAGCAAAAACTTAGGCAAGGGTTGCCTGCTGACAGTGTAGCTCCTGGACA
GGTCCAGTCACAGCAGTTTCTTGGAAGAAAAGAAAGACTTCCAAACTGATGAATTTCTTT
CATACTTTTCAGCTTCTCTACAATTCCCTCTAATGTTACGTTCCATGTGTTCATAGCAGG
CTTCTGTAATGACACGTGTACAATC
■■Homology search results ■■ -
sp_hit_id A6QPH9
Definition sp|A6QPH9|ZMYM5_BOVIN Zinc finger MYM-type protein 5 OS=Bos taurus
Align length 79
Score (bit) 34.3
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921853|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_H10.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6QPH9|ZMYM5_BOVIN Zinc finger MYM-type protein 5 OS=Bos taur...    34   0.34 
sp|O83998|SYV_TREPA Valyl-tRNA synthetase OS=Treponema pallidum ...    33   0.58 
sp|Q7XJM2|CCD7_ARATH Carotenoid cleavage dioxygenase 7, chloropl...    30   4.9  
sp|Q9Z9J4|AMPM_BACHD Methionine aminopeptidase OS=Bacillus halod...    30   4.9  
sp|P19994|AMPM1_BACSU Methionine aminopeptidase 1 OS=Bacillus su...    30   4.9  

>sp|A6QPH9|ZMYM5_BOVIN Zinc finger MYM-type protein 5 OS=Bos taurus
           GN=ZMYM5 PE=2 SV=2
          Length = 673

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -2

Query: 318 FCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASEPWMAHLGNAY 139
           FCSTT         LS    +  P+   ++ + D   K  ++VP   +SEP+      ++
Sbjct: 268 FCSTTC--------LSSFSHKRTPKKRNVTCKKDAPTKKATVVPQGESSEPFPKCFSTSH 319

Query: 138 CGPQKDEIAIEVVVHNKSK 82
             P +D   +   V NKS+
Sbjct: 320 LSPYEDSQNLRKRVLNKSR 338


>sp|O83998|SYV_TREPA Valyl-tRNA synthetase OS=Treponema pallidum
           GN=valS PE=3 SV=1
          Length = 956

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 504 IVHVSLQKPAMNTWNVTLEGIVEKLKSMKEIHQFGSLSFLPRN--CCDWTCPGATLSAG 334
           +V  +L+K  ++   VT E  V + + +K+ HQ      L +    CDWTC   TL AG
Sbjct: 116 VVERALRKEGIHKREVTREQFVARTQQIKDSHQDTIRMQLRKMGASCDWTCERFTLDAG 174


>sp|Q7XJM2|CCD7_ARATH Carotenoid cleavage dioxygenase 7,
           chloroplastic OS=Arabidopsis thaliana GN=CCD7 PE=1 SV=1
          Length = 618

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -2

Query: 333 NPCLSFCSTTAQSPSVEEALSRIRSQ------IIPRVMKISLRGDRRIKSVSIVPSDMAS 172
           NP  S  +    SP V  ALS   S       I+PR      RG R  +    VP +++S
Sbjct: 338 NPIGSIAAMCGMSPMVS-ALSLNPSNESSPIYILPRFSDKYSRGGRDWR----VPVEVSS 392

Query: 171 EPWMAHLGNAY 139
           + W+ H GNAY
Sbjct: 393 QLWLIHSGNAY 403


>sp|Q9Z9J4|AMPM_BACHD Methionine aminopeptidase OS=Bacillus
           halodurans GN=map PE=3 SV=1
          Length = 248

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 192 VPSDMASEPWMAHLGNAYCGPQKDE---IAIEVVVHNKSKYIRKKSDAWHIV 46
           V  ++  +P + H G    GP+      +AIE +V+  S+Y+R  SD W +V
Sbjct: 170 VGQNLHEDPQIPHYGPPGKGPRLKPGMVLAIEPMVNAGSRYVRTLSDNWTVV 221


>sp|P19994|AMPM1_BACSU Methionine aminopeptidase 1 OS=Bacillus
           subtilis GN=map PE=1 SV=1
          Length = 248

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 192 VPSDMASEPWMAHLGNAYCGPQKDE---IAIEVVVHNKSKYIRKKSDAWHIV 46
           V  D+  +P + H G    GP+      +AIE +V+  S+Y++  +D W +V
Sbjct: 170 VGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNWTVV 221
tr_hit_id Q1L5Y1
Definition tr|Q1L5Y1|Q1L5Y1_9FILI DNA-directed RNA polymerase (Fragment) OS=Ceratopteris thalictroides
Align length 168
Score (bit) 177.0
E-value 2.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921853|Adiantum capillus-veneris mRNA, clone:
YMU001_000154_H10.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1L5Y1|Q1L5Y1_9FILI DNA-directed RNA polymerase (Fragment) OS...   177   2e-43
tr|Q5D869|Q5D869_ARATH DNA-directed RNA polymerase OS=Arabidopsi...    74   5e-12
tr|Q1L5X4|Q1L5X4_ARATH DNA-directed RNA polymerase OS=Arabidopsi...    74   5e-12
tr|A7Q5G0|A7Q5G0_VITVI DNA-directed RNA polymerase OS=Vitis vini...    69   1e-10
tr|Q1L5X8|Q1L5X8_9BRYO DNA-directed RNA polymerase (Fragment) OS...    65   2e-09
tr|A9SIX8|A9SIX8_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    64   4e-09
tr|Q5D868|Q5D868_SPIOL DNA-directed RNA polymerase (Fragment) OS...    59   2e-07
tr|A9SIR4|A9SIR4_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    57   4e-07
tr|Q1L5X9|Q1L5X9_MARPO DNA-directed RNA polymerase (Fragment) OS...    52   1e-05
tr|Q1L5X7|Q1L5X7_SOLLC DNA-directed RNA polymerase (Fragment) OS...    52   1e-05
tr|A3A384|A3A384_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    52   1e-05
tr|B8A9M1|B8A9M1_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsi...    47   7e-04
tr|Q5JJW0|Q5JJW0_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    46   9e-04
tr|A3A1U6|A3A1U6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    46   9e-04
tr|A5BGS4|A5BGS4_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|B3QKA0|B3QKA0_RHOPT Urea carboxylase OS=Rhodopseudomonas palu...    35   2.1  
tr|A8G4A0|A8G4A0_PROM2 Lhr-like helicase OS=Prochlorococcus mari...    35   2.1  
tr|A3PCD0|A3PCD0_PROM0 DEAD/DEAH box helicase:Helicase C-termina...    34   3.5  
tr|A2BWA6|A2BWA6_PROM5 DEAD/DEAH box helicase:Helicase C-termina...    34   3.5  
tr|Q7TUB3|Q7TUB3_PROMP DEAD/DEAH box helicase:Helicase C-termina...    33   6.0  
tr|Q6N9Y1|Q6N9Y1_RHOPA Putative urea amidolyase OS=Rhodopseudomo...    33   6.0  
tr|Q31BF3|Q31BF3_PROM9 DEAD/DEAH box helicase-like protein OS=Pr...    33   6.0  
tr|B2S4S2|B2S4S2_TREPS Valyl-tRNA synthetase OS=Treponema pallid...    33   6.0  
tr|A2BQK7|A2BQK7_PROMS DEAD/DEAH box helicase:Helicase C-termina...    33   6.0  
tr|A5DQT8|A5DQT8_PICGU Putative uncharacterized protein OS=Pichi...    33   7.8  

>tr|Q1L5Y1|Q1L5Y1_9FILI DNA-directed RNA polymerase (Fragment)
            OS=Ceratopteris thalictroides GN=RPD1 PE=2 SV=1
          Length = 836

 Score =  177 bits (450), Expect = 2e-43
 Identities = 86/168 (51%), Positives = 116/168 (69%)
 Frame = -2

Query: 504  IVHVSLQKPAMNTWNVTLEGIVEKLKSMKEIHQFGSLSFLPRNCCDWTCPGATLSAGNPC 325
            IVH+ L + A++ +N+  E I +KL +   +H FG+L F+ R  CD +CPG T  + NPC
Sbjct: 538  IVHMLLDQTALSAYNLEAEAIAKKLLNTNSVHSFGALHFVARGSCDLSCPGCTRLSENPC 597

Query: 324  LSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASEPWMAHLGN 145
            LSFC +TAQSPS+EEALS+IR  I+P +MK+S+RGDRRIKSVSI+PS + SE        
Sbjct: 598  LSFCLSTAQSPSIEEALSQIRDIIVPHIMKVSVRGDRRIKSVSILPSGILSEAVPFGSQE 657

Query: 144  AYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
             Y      EIA+EV +H K K  R+K++AW++V +LCG VLH INW R
Sbjct: 658  HYRERSSTEIALEVTIHGKLKSTRQKTNAWNVVLDLCGSVLHKINWLR 705


>tr|Q5D869|Q5D869_ARATH DNA-directed RNA polymerase OS=Arabidopsis
            thaliana GN=NRPD1b PE=2 SV=1
          Length = 1976

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKL----------KSMKEIHQFGSLSFLPRNCCDWTCPGA 349
            H+ L K  +  WN++++ I +K           K  K    F   S     CC +  P  
Sbjct: 938  HIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCG 997

Query: 348  TLSAGNPCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASE 169
            +  +  PCL+F S  A  P +E  L  + + + P +++I ++GD RI S +I+ +     
Sbjct: 998  SKGSDMPCLTF-SYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMT 1056

Query: 168  PWMAHLGNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
             W+ +   +    ++ E  ++V V   +  +++  DAW +V + C  VLHLI+  R
Sbjct: 1057 TWIRNRHAS----RRGEWVLDVTVEKSA--VKQSGDAWRVVIDSCLSVLHLIDTKR 1106


>tr|Q1L5X4|Q1L5X4_ARATH DNA-directed RNA polymerase OS=Arabidopsis
            thaliana GN=RPE1 PE=2 SV=1
          Length = 1976

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKL----------KSMKEIHQFGSLSFLPRNCCDWTCPGA 349
            H+ L K  +  WN++++ I +K           K  K    F   S     CC +  P  
Sbjct: 938  HIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCG 997

Query: 348  TLSAGNPCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASE 169
            +  +  PCL+F S  A  P +E  L  + + + P +++I ++GD RI S +I+ +     
Sbjct: 998  SKGSDMPCLTF-SYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMT 1056

Query: 168  PWMAHLGNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
             W+ +   +    ++ E  ++V V   +  +++  DAW +V + C  VLHLI+  R
Sbjct: 1057 TWIRNRHAS----RRGEWVLDVTVEKSA--VKQSGDAWRVVIDSCLSVLHLIDTKR 1106


>tr|A7Q5G0|A7Q5G0_VITVI DNA-directed RNA polymerase OS=Vitis vinifera
            GN=GSVIVT00030927001 PE=3 SV=1
          Length = 1830

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEK-------LKSMKEIHQFGSLSFLP-RNCCDWTCPGATL 343
            H+ L K  +   NV+++ + +K        +  K +  F     L  R CC +     + 
Sbjct: 942  HIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSK 1001

Query: 342  SAGNPCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASEPW 163
             +  PCL F     +  ++E+ L  +  +I P +++  ++GD R+ +V+I+     +  W
Sbjct: 1002 GSDMPCLLFFWQGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTW 1061

Query: 162  MAHLGNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
            + +     C  +K E+A+++V+   +  ++++ DAW IV + C PVLHLI+  R
Sbjct: 1062 IRN----PCKSRKGELALDIVLEKAA--VKQRGDAWRIVLDACLPVLHLIDTRR 1109


>tr|Q1L5X8|Q1L5X8_9BRYO DNA-directed RNA polymerase (Fragment)
            OS=Sphagnum sp. JL-2005 GN=RPD1 PE=2 SV=1
          Length = 969

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKLKSMKEI-------HQFGSLSFLPRNCCDWT---CPGA 349
            H+ + K  +    +T+  IV KL+    I       +  G + F     CD +   C   
Sbjct: 561  HIHISKEVLQQHELTMTKIVGKLQRKFSILRPITKKNPLGQIFFCHSEFCDVSRGLCIHF 620

Query: 348  TLSAGNPCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASE 169
            +        +       S S+ E + ++R +I+P +++ +++GD R++SV IV  D    
Sbjct: 621  SPKLPKKMQNQYDDDEYSHSLLELMKKMRDRILPALLECTIKGDERLESVKIVQEDCTWP 680

Query: 168  PWMAHLGNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
             W          P ++E+ +EVV  +      K++ AW+ V E C PV+  ++W R
Sbjct: 681  SWHPKTAGV-VRPGEEELVLEVVATSSLHQKSKRNMAWNAVMEACVPVMEEVDWQR 735


>tr|A9SIX8|A9SIX8_PHYPA DNA-directed RNA polymerase OS=Physcomitrella
            patens subsp. patens GN=NRPDA1501 PE=3 SV=1
          Length = 2458

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKLKSM-------KEIHQFGSLSF-LPRNC--CDWTCPGA 349
            H+ L    M    V +E +VE+L+          + H  G + F +  NC   +  C   
Sbjct: 1430 HIKLSLNLMKQLQVDVELMVERLRQRFSGIIKNPKKHPMGQIFFCVSYNCGISNGLCLHF 1489

Query: 348  TLSAGNPCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASE 169
            +    N   +  +    + ++   L +IR  II  ++  +++GD RI+SV IV  D +  
Sbjct: 1490 SPKLPNKMQNQRNDEIYNTALLALLLKIRGTIISGLLDCTVKGDERIESVIIVSEDPSRT 1549

Query: 168  PWMAHLGNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
             W  H G       ++E+ +EVVV + +K   K+ DAW  V++ C P++H+++W+R
Sbjct: 1550 TW--HRGLTCNQELEEELVLEVVV-SPTKSKSKRGDAWASVKQACLPLMHMVDWNR 1602


>tr|Q5D868|Q5D868_SPIOL DNA-directed RNA polymerase (Fragment)
            OS=Spinacia oleracea GN=NRPD1b PE=2 SV=1
          Length = 1902

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKL--------KSMKEIHQFGSLSFLPRNCCDWTCPGATL 343
            H+ L    +    + +  I++K         K  K  + F  +     +CC +    +  
Sbjct: 741  HIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKKKYGYHFKRILLSVSDCCFFNHSDSKW 800

Query: 342  SAGNPCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASEPW 163
            +   PCL F         +E     +   I P ++   ++GD RI +V+I+  +  +  W
Sbjct: 801  T-DMPCLKFFWQDMTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTW 859

Query: 162  MAHLGNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
            +     + C   K E+A+EV +  ++  +R   DAW IV + C PV HLI+  R
Sbjct: 860  V----QSPCSSTKGELAVEVALEKEA--VRLTGDAWRIVLDCCLPVFHLIDTRR 907


>tr|A9SIR4|A9SIR4_PHYPA DNA-directed RNA polymerase OS=Physcomitrella
            patens subsp. patens GN=NRPDA1502 PE=3 SV=1
          Length = 1795

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKLKS--------MKEIHQFGSLSFLPRNCCDWTCPGATL 343
            H++L + AM    V +E IV++L          + + ++ G + F    C  + C   + 
Sbjct: 1252 HINLSQDAMKQCEVNVEDIVKRLCQKFSQTAGYVLKKNKMGQIFF----CHSYNC---SF 1304

Query: 342  SAGNPCLSF----------CSTTAQ-SPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVS 196
            S G  CL F          CS   + + ++ + L RI+  IIP ++  +++GD RI++V 
Sbjct: 1305 SNGY-CLHFSPSLPIKMRHCSNEDRYNKALLDLLLRIQETIIPGLLDCTMKGDERIETVR 1363

Query: 195  IVPSDMASEPWMAHLGNAYC-GPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLH 19
            +V    AS  W  H   A+C G   +E+ +EV V   S   + +  AW  V++ C  +  
Sbjct: 1364 VVCEGPASTTW--HRRFAHCTGNLDEELVLEVYVSPSSS--KSRGMAWASVKQACVSLKD 1419

Query: 18   LINWSR 1
            L++W+R
Sbjct: 1420 LVDWNR 1425


>tr|Q1L5X9|Q1L5X9_MARPO DNA-directed RNA polymerase (Fragment)
            OS=Marchantia polymorpha GN=RPD1 PE=2 SV=1
          Length = 1008

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 29/195 (14%)
 Frame = -2

Query: 498  HVSLQKPAMNTWNVTLEGIVEKLKSMKEIH-------QFGSLSFLPRN--CCDWTCPGAT 346
            HV L K  +    ++ E I+++L S  +IH       + G++ F  R+   CD      T
Sbjct: 560  HVQLDKMVLTEKKISQEMILDRLHSKVKIHKSVSRKFRIGNIVFCIRDSCTCDMNIYQET 619

Query: 345  L-----SAGNPCLSFCSTTAQSPSVE-------------EALSRIRSQIIPRVMKISLRG 220
            +         PCL F  T +    V              E L  +++ IIP ++K  ++G
Sbjct: 620  VKLRQKEVVGPCLHFLLTRSTRGKVRSIKTVKEVSNETVELLEVLQNFIIPEILKTVVKG 679

Query: 219  DRRIKSVSIVPSDMASEPWMAHLGN--AYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIV 46
              +++SV+I+  D    P +    N        + E+ +EV V  K  Y + +   W  V
Sbjct: 680  SEKLQSVNILWEDATWSPPVKSEENDSNVMKSGRGELVLEVTV--KELYSQSRGMPWRTV 737

Query: 45   QELCGPVLHLINWSR 1
            QE C   +  ++W R
Sbjct: 738  QESCIQFVDYVDWQR 752


>tr|Q1L5X7|Q1L5X7_SOLLC DNA-directed RNA polymerase (Fragment)
           OS=Solanum lycopersicum GN=RPE1 PE=2 SV=1
          Length = 1127

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 28/110 (25%), Positives = 55/110 (50%)
 Frame = -2

Query: 330 PCLSFCSTTAQSPSVEEALSRIRSQIIPRVMKISLRGDRRIKSVSIVPSDMASEPWMAHL 151
           PCL F    A    +E     +   I P ++   ++GD R+ S +I      +  W+   
Sbjct: 557 PCLRFSWPDASDDHLERVSHILADMIXPILLDTVIKGDPRVSSANIAWISPDTMSWIRSP 616

Query: 150 GNAYCGPQKDEIAIEVVVHNKSKYIRKKSDAWHIVQELCGPVLHLINWSR 1
             +    Q+ E+A+++V+  ++  ++ + DAW  + + C PV+HLI+ +R
Sbjct: 617 SKS----QRGELALDIVLEKEA--VKXRGDAWRXLMDSCLPVIHLIDTTR 660