DK943654
Clone id YMU02A01NGRL0003_I10
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_I10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGGCTCTTTTTTGATTATATCGCAATGGCCATGCGAGCTACAGCATCGCGCTTTCGCCTT
CTCCAACGCGCGACATCTCACAATGGCCCGTTCCAGTCCTGTCGCTTCAGTAGTGGGTCT
GGTTATGTAAAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTAGCTGCGCAGGAAGGAAAG
ACTGAGGCAAGCATCTCAAATAGTGCTGCTCCAGGGTCTCCAGCACTCCCACGTCCTGCG
GCTACAGGGGCGTCTCCAGATCAAAACAAGAATGTGGCTGTAGCTGCAGGTGTGGTGGCT
CTAATTGCATCAGGGTTGTGGTATTATCGGGTTAGAAAGAATGTGCCGCCAGAGGAAACA
GATGAATTAGCAGGGTTGTAATCTCCACTCACCGTTCTACTCTCAGGTGTCTCAAGTTTT
GTATGTGATTCTGTGCAGAAGAGGAGCTTCTTGGGTGTGCTGCCCGATAGAAATGGAACA
ATTCAACCCCAGGCTTTACTTTCTTAGTGGAAATTCCTCCTGGCTTCTCT
■■Homology search results ■■ -
sp_hit_id Q8WXI8
Definition sp|Q8WXI8|CLC4D_HUMAN C-type lectin domain family 4 member D OS=Homo sapiens
Align length 28
Score (bit) 32.3
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943654|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_I10, 5'
(530 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8WXI8|CLC4D_HUMAN C-type lectin domain family 4 member D OS=... 32 1.4
sp|Q69FH1|CLC4D_RAT C-type lectin domain family 4 member D OS=Ra... 32 1.9
sp|Q9Z2H6|CLC4D_MOUSE C-type lectin domain family 4 member D OS=... 32 1.9
sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone de... 31 4.2
sp|Q9P904|PALH_EMENI pH-response regulator protein palH/RIM21 OS... 30 9.4

>sp|Q8WXI8|CLC4D_HUMAN C-type lectin domain family 4 member D
OS=Homo sapiens GN=CLEC4D PE=2 SV=2
Length = 215

Score = 32.3 bits (72), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2

Query: 443 GASWVCCPIEMEQFNPRLYF-LSGNSSW 523
G++W CCPI+ F YF L+ N +W
Sbjct: 78 GSTWNCCPIDWRAFQSNCYFPLTDNKTW 105


>sp|Q69FH1|CLC4D_RAT C-type lectin domain family 4 member D
OS=Rattus norvegicus GN=Clec4d PE=2 SV=1
Length = 218

Score = 32.0 bits (71), Expect = 1.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2

Query: 443 GASWVCCPIEMEQFNPRLYF-LSGNSSW 523
G +W CCP+ F YF L+ N +W
Sbjct: 76 GGTWTCCPVSWRAFQSNCYFALNDNQTW 103


>sp|Q9Z2H6|CLC4D_MOUSE C-type lectin domain family 4 member D OS=Mus
musculus GN=Clec4d PE=2 SV=1
Length = 219

Score = 32.0 bits (71), Expect = 1.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2

Query: 443 GASWVCCPIEMEQFNPRLYF-LSGNSSW 523
G +W CCP+ F YF L+ N +W
Sbjct: 77 GGTWTCCPVSWRAFQSNCYFPLNDNQTW 104


>sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone
demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=2
SV=2
Length = 2350

Score = 30.8 bits (68), Expect = 4.2
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2

Query: 329 GLERMCRQRKQMN*QGCNLHSPFYSQVSQVLYVILCRRGASWVCCPIEMEQFNPRLYFLS 508
G++ C + N QG N+ P + VSQVL +L + V P +Q +P+ +
Sbjct: 1739 GIKSHCHCTNRQNLQGGNV--PTMNGVSQVLQNVLHHSNKTSVSLPESQQQNSPQKSQTN 1796

Query: 509 GNSS 520
GNSS
Sbjct: 1797 GNSS 1800


>sp|Q9P904|PALH_EMENI pH-response regulator protein palH/RIM21
OS=Emericella nidulans GN=palH PE=3 SV=1
Length = 760

Score = 29.6 bits (65), Expect = 9.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2

Query: 380 NLHSPFYSQVSQVLYVILCRRGASWVCCPIEMEQFNPRLYFLSG 511
++H PFY+ V+ +LY + C S++ I + PR +++ G
Sbjct: 74 DIHDPFYASVTPLLYAMGCATVVSYLLVIILL--ITPRTFYVGG 115


tr_hit_id B4JW72
Definition tr|B4JW72|B4JW72_DROGR GH22794 OS=Drosophila grimshawi
Align length 52
Score (bit) 33.9
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943654|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_I10, 5'
(530 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4JW72|B4JW72_DROGR GH22794 OS=Drosophila grimshawi GN=GH2279... 34 5.3
tr|B4JW71|B4JW71_DROGR GH22795 OS=Drosophila grimshawi GN=GH2279... 34 5.3

>tr|B4JW72|B4JW72_DROGR GH22794 OS=Drosophila grimshawi GN=GH22794
PE=4 SV=1
Length = 455

Score = 33.9 bits (76), Expect = 5.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2

Query: 337 F*PDNTTTLMQLEPPHLQLQPHSCFDLETPL*PQDVGVLETLEQHYLRCLPQ 182
F P+N T+ + L PH+C L +G++ L+ HY+RC Q
Sbjct: 369 FSPENRKTIEAMAYQPFGLGPHNCIGSRIGLLQTKLGLVHILKNHYVRCCSQ 420


>tr|B4JW71|B4JW71_DROGR GH22795 OS=Drosophila grimshawi GN=GH22795
PE=4 SV=1
Length = 525

Score = 33.9 bits (76), Expect = 5.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2

Query: 337 F*PDNTTTLMQLEPPHLQLQPHSCFDLETPL*PQDVGVLETLEQHYLRCLPQ 182
F P+N T+ + L PH+C L +G++ L+ HY+RC Q
Sbjct: 436 FSPENRKTIEAMAYQPFGLGPHNCIGSRIGLLQTKLGLVHILKNHYVRCCSQ 487