DK943823
Clone id YMU02A01NGRL0004_B03
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_B03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GAACGTTCGTACAAGTAAAAGCAAAGACACGTCATACGATTAAACGAATGCCTGCAGATT
TTGGTGCGCCATGGCGGAGGAGTACTCGGACTTCGATCCAAGCGAGGAAACTTTGAAGGC
TGCAAGGAGTGCAGCTGGAGGCTTCAACCCTGCCCTAGTTGTGTTGCTGGTGGTGATCGG
AGTGGTATTACTTTTTGTGGTTGGCAACTATGTCCTCTATTCGTATGCCCAGAAAACACT
GCCTGCCAAAAAGAAAAAGCCAGTCTCAAAAAAGAAAATCAAGCGGGAAAGATTAAAGCG
AGGCATCGCACCACCGGGAGAGTAGAACTTTACATTGTGTCCAACTTTTTGTCATTGAGT
ATTTCTACTGGTTTGGTGCTATCCCCCTTTCGGATTTTAGTATTGAAATGCAAAGGGGAT
GTCTAGGTGACTTGAAACTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P42552
Definition sp|P42552|S1FA_SPIOL DNA-binding protein S1FA OS=Spinacia oleracea
Align length 63
Score (bit) 49.7
E-value 5.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943823|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_B03, 5'
(442 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P42552|S1FA_SPIOL DNA-binding protein S1FA OS=Spinacia olerac... 50 5e-06
sp|P42553|S1FA1_ORYSJ DNA-binding protein S1FA1 OS=Oryza sativa ... 45 1e-04
sp|Q7XLX6|S1FA2_ORYSJ DNA-binding protein S1FA2 OS=Oryza sativa ... 45 2e-04
sp|P42554|S1FA_MAIZE DNA-binding protein S1FA (Fragment) OS=Zea ... 44 3e-04
sp|P42551|S1FA1_ARATH DNA-binding protein S1FA1 OS=Arabidopsis t... 43 5e-04
sp|Q42337|S1FA2_ARATH DNA-binding protein S1FA2 OS=Arabidopsis t... 41 0.002
sp|Q93VI0|S1FA3_ARATH DNA-binding protein S1FA3 OS=Arabidopsis t... 40 0.003
sp|Q3MHH9|ECM2_BOVIN Extracellular matrix protein 2 OS=Bos tauru... 32 1.2
sp|Q8EHP4|SYL_SHEON Leucyl-tRNA synthetase OS=Shewanella oneiden... 32 1.5
sp|Q65VR5|SYL_MANSM Leucyl-tRNA synthetase OS=Mannheimia succini... 32 1.5
sp|P93203|MFP1_SOLLC MAR-binding filament-like protein 1 OS=Sola... 32 1.5
sp|A1RGU5|SYL_SHESW Leucyl-tRNA synthetase OS=Shewanella sp. (st... 31 2.0
sp|A4Y9E9|SYL_SHEPC Leucyl-tRNA synthetase OS=Shewanella putrefa... 31 2.0
sp|A9L001|SYL_SHEB9 Leucyl-tRNA synthetase OS=Shewanella baltica... 31 2.0
sp|A6WRJ9|SYL_SHEB8 Leucyl-tRNA synthetase OS=Shewanella baltica... 31 2.0
sp|A3D7N6|SYL_SHEB5 Leucyl-tRNA synthetase OS=Shewanella baltica... 31 2.0
sp|A6VMB8|SYL_ACTSZ Leucyl-tRNA synthetase OS=Actinobacillus suc... 31 2.6
sp|Q0HLJ0|SYL_SHESM Leucyl-tRNA synthetase OS=Shewanella sp. (st... 30 3.4
sp|A0KTW7|SYL_SHESA Leucyl-tRNA synthetase OS=Shewanella sp. (st... 30 3.4
sp|Q1QV15|SYL_CHRSD Leucyl-tRNA synthetase OS=Chromohalobacter s... 30 3.4
sp|O94769|ECM2_HUMAN Extracellular matrix protein 2 OS=Homo sapi... 30 4.5
sp|A2STX4|QUEC_METLZ Archaeosine biosynthesis protein queC OS=Me... 29 9.8

>sp|P42552|S1FA_SPIOL DNA-binding protein S1FA OS=Spinacia oleracea
GN=S1FA PE=3 SV=1
Length = 70

Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/63 (39%), Positives = 30/63 (47%)
Frame = +2

Query: 134 AGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAP 313
A G NP GN++LY+YAQK LP RERLK+G+AP
Sbjct: 8 AKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQGVAP 67

Query: 314 PGE 322
PGE
Sbjct: 68 PGE 70


>sp|P42553|S1FA1_ORYSJ DNA-binding protein S1FA1 OS=Oryza sativa
subsp. japonica GN=S1FA1 PE=3 SV=1
Length = 76

Score = 45.1 bits (105), Expect = 1e-04
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP RE+LK+G++ PG
Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75

Query: 320 E 322
E
Sbjct: 76 E 76


>sp|Q7XLX6|S1FA2_ORYSJ DNA-binding protein S1FA2 OS=Oryza sativa
subsp. japonica GN=S1FA2 PE=3 SV=2
Length = 80

Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP RE+LK+G++ PG
Sbjct: 20 GLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPG 79

Query: 320 E 322
E
Sbjct: 80 E 80


>sp|P42554|S1FA_MAIZE DNA-binding protein S1FA (Fragment) OS=Zea
mays GN=S1FA PE=3 SV=1
Length = 63

Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/61 (37%), Positives = 28/61 (45%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP +E+LK+G++ PG
Sbjct: 3 GLNPGMVVXLVVASFLLIFFVGNYALYXYAQKTLPPKKKKPVSKKKLKKEKLKQGVSAPG 62

Query: 320 E 322
E
Sbjct: 63 E 63


>sp|P42551|S1FA1_ARATH DNA-binding protein S1FA1 OS=Arabidopsis
thaliana GN=S1FA1 PE=2 SV=2
Length = 76

Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/73 (34%), Positives = 30/73 (41%)
Frame = +2

Query: 104 EETLKAARSAAGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXX 283
E+ A + A G NP NYVLY YAQK LP
Sbjct: 4 EDFAGKAAAEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLK 63

Query: 284 RERLKRGIAPPGE 322
RE+LK+G+ PGE
Sbjct: 64 REKLKQGVPVPGE 76


>sp|Q42337|S1FA2_ARATH DNA-binding protein S1FA2 OS=Arabidopsis
thaliana GN=S1FA2 PE=2 SV=2
Length = 76

Score = 41.2 bits (95), Expect = 0.002
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +2

Query: 134 AGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAP 313
A G NP NYV+Y YAQK LP RE+LK+G+
Sbjct: 14 AKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVPV 73

Query: 314 PGE 322
PGE
Sbjct: 74 PGE 76


>sp|Q93VI0|S1FA3_ARATH DNA-binding protein S1FA3 OS=Arabidopsis
thaliana GN=S1FA3 PE=2 SV=1
Length = 73

Score = 40.4 bits (93), Expect = 0.003
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GN++LY+YAQK LP +E++K+G+ PG
Sbjct: 13 GLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQVPG 72

Query: 320 E 322
E
Sbjct: 73 E 73


>sp|Q3MHH9|ECM2_BOVIN Extracellular matrix protein 2 OS=Bos taurus
GN=ECM2 PE=2 SV=1
Length = 680

Score = 32.0 bits (71), Expect = 1.2
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +1

Query: 136 WRLQPCPSCVA--GGDRSGITFCGWQLCPLFVCPENTAC-------QKEKASLKKENQAG 288
W +PC +C+ G T C Q+CP + PE C Q+E +L + Q+
Sbjct: 115 WSPEPCTTCLCLNGKVLCDETKCHPQMCPQTIIPEGECCPVCSNTEQREPTNLPHKQQSP 174

Query: 289 KIKARHRTTGRVELYI 336
+ +R + EL +
Sbjct: 175 PWEEMNRALRKEELQL 190


>sp|Q8EHP4|SYL_SHEON Leucyl-tRNA synthetase OS=Shewanella oneidensis
GN=leuS PE=3 SV=1
Length = 859

Score = 31.6 bits (70), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1

Query: 226 CPENTACQKEKASLKKENQAGKIKARHRTTGRVELYIVSNFLSLSISTGLVLS 384
C +T + E A+++K A + A H TG+ +NF+ ++ TG V+S
Sbjct: 285 CKNSTTSEAELATMEKRGVATGLYAIHPITGKQVPIWAANFVLMNYGTGAVMS 337


>sp|Q65VR5|SYL_MANSM Leucyl-tRNA synthetase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=leuS PE=3 SV=1
Length = 860

Score = 31.6 bits (70), Expect = 1.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1

Query: 226 CPENTACQKEKASLKKENQAGKIKARHRTTGRVELYIVSNFLSLSISTGLVLS 384
C + E A+++K+ A I A H TG+ V+NF+ + TG V++
Sbjct: 285 CKNTKVAEAELATMEKKGMATGINAIHPITGKPVPVWVANFVLMHYGTGAVMA 337


tr_hit_id A9NTB9
Definition tr|A9NTB9|A9NTB9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 91
Score (bit) 54.7
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943823|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_B03, 5'
(442 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NTB9|A9NTB9_PICSI Putative uncharacterized protein OS=Picea... 55 2e-06
tr|A7PT09|A7PT09_VITVI Chromosome chr8 scaffold_29, whole genome... 51 2e-05
tr|A9P8U4|A9P8U4_POPTR Putative uncharacterized protein OS=Popul... 49 1e-04
tr|A7NZG3|A7NZG3_VITVI Chromosome chr6 scaffold_3, whole genome ... 48 3e-04
tr|A5BKG4|A5BKG4_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A9P8W5|A9P8W5_POPTR Putative uncharacterized protein OS=Popul... 46 0.001
tr|Q0JDF1|Q0JDF1_ORYSJ Os04g0408900 protein OS=Oryza sativa subs... 45 0.002
tr|Q01L73|Q01L73_ORYSA H0321H01.7 protein OS=Oryza sativa GN=H03... 45 0.002
tr|A2XT51|A2XT51_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002
tr|A2XT48|A2XT48_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002
tr|Q0JDF2|Q0JDF2_ORYSJ Os04g0408700 protein OS=Oryza sativa subs... 45 0.002
tr|Q01L74|Q01L74_ORYSA H0321H01.6 protein OS=Oryza sativa GN=H03... 45 0.002
tr|B6SLS1|B6SLS1_MAIZE DNA-binding protein S1FA2 OS=Zea mays PE=... 45 0.002
tr|A5WYH4|A5WYH4_WHEAT DNA-binding protein S1FA OS=Triticum aest... 45 0.002
tr|A2XT50|A2XT50_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002
tr|B6T1C3|B6T1C3_MAIZE DNA-binding protein S1FA2 OS=Zea mays PE=... 44 0.005
tr|B6SRM4|B6SRM4_MAIZE DNA-binding protein S1FA2 OS=Zea mays PE=... 42 0.012
tr|Q2FUC0|Q2FUC0_METHJ Zinc finger, AN1-type OS=Methanospirillum... 36 1.1
tr|A9RXV5|A9RXV5_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.4
tr|Q9FTR9|Q9FTR9_ORYSJ cDNA clone:001-125-D07, full insert seque... 34 3.1
tr|A2WK77|A2WK77_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.1
tr|A8I3Y6|A8I3Y6_CHLRE Predicted protein OS=Chlamydomonas reinha... 33 5.4

>tr|A9NTB9|A9NTB9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 90

Score = 54.7 bits (130), Expect = 2e-06
Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +2

Query: 71 MAEEYS---DFDPS----EETLKAARSAAGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYA 229
M E++S D DPS +E L ++A GFNP GNYVLY YA
Sbjct: 1 MEEDFSSQADIDPSAFASQERL-LTKAAGRGFNPGLIVLLVVVGVLLVFIVGNYVLYMYA 59

Query: 230 QKTLPAXXXXXXXXXXXXRERLKRGIAPPGE 322
QKTLP RE+LK+GI+ PGE
Sbjct: 60 QKTLPPKKKKPVSKKKMKREKLKQGISAPGE 90


>tr|A7PT09|A7PT09_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023165001
PE=4 SV=1
Length = 89

Score = 51.2 bits (121), Expect = 2e-05
Identities = 30/77 (38%), Positives = 36/77 (46%)
Frame = +2

Query: 92 FDPSEETLKAARSAAGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXX 271
FD E +K A A GFNP GN++LY YAQKTLP
Sbjct: 15 FDRMENMVKDAE--AKGFNPGLIVLLLVVGVLLVFLVGNFLLYMYAQKTLPRMKKKPVSK 72

Query: 272 XXXXRERLKRGIAPPGE 322
RERLK+G++ PGE
Sbjct: 73 KKMKRERLKQGVSAPGE 89


>tr|A9P8U4|A9P8U4_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 88

Score = 48.9 bits (115), Expect = 1e-04
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2

Query: 80 EYSDFDPSEETLKAARSAAG--GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXX 253
E+S+ PS + + A G NP GNYVLYSYAQKTLP
Sbjct: 6 EFSNSPPSFQNMGDLIKDAEPKGLNPGLIVLLVIGGLLLTFLIGNYVLYSYAQKTLPPRK 65

Query: 254 XXXXXXXXXXRERLKRGIAPPGE 322
+ERLK+G++ PGE
Sbjct: 66 KKPISKKKMKKERLKQGVSAPGE 88


>tr|A7NZG3|A7NZG3_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024502001
PE=4 SV=1
Length = 89

Score = 47.8 bits (112), Expect = 3e-04
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = +2

Query: 134 AGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAP 313
A GFNP GNY LY YAQKTLP +ERLK+G++
Sbjct: 27 AKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKKERLKQGVSA 86

Query: 314 PGE 322
PGE
Sbjct: 87 PGE 89


>tr|A5BKG4|A5BKG4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_033336 PE=4 SV=1
Length = 108

Score = 47.8 bits (112), Expect = 3e-04
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = +2

Query: 134 AGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAP 313
A GFNP GNY LY YAQKTLP +ERLK+G++
Sbjct: 46 AKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKKERLKQGVSA 105

Query: 314 PGE 322
PGE
Sbjct: 106 PGE 108


>tr|A9P8W5|A9P8W5_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 89

Score = 45.8 bits (107), Expect = 0.001
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GN+VLY+YAQKTLP +ERLK+G++ PG
Sbjct: 29 GLNPGLIVLLVIGGLLMSFLVGNFVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPG 88

Query: 320 E 322
E
Sbjct: 89 E 89


>tr|Q0JDF1|Q0JDF1_ORYSJ Os04g0408900 protein OS=Oryza sativa subsp.
japonica GN=Os04g0408900 PE=4 SV=1
Length = 76

Score = 45.1 bits (105), Expect = 0.002
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP RE+LK+G++ PG
Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75

Query: 320 E 322
E
Sbjct: 76 E 76


>tr|Q01L73|Q01L73_ORYSA H0321H01.7 protein OS=Oryza sativa
GN=H0321H01.7 PE=4 SV=1
Length = 76

Score = 45.1 bits (105), Expect = 0.002
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP RE+LK+G++ PG
Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75

Query: 320 E 322
E
Sbjct: 76 E 76


>tr|A2XT51|A2XT51_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_15788 PE=4 SV=1
Length = 76

Score = 45.1 bits (105), Expect = 0.002
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP RE+LK+G++ PG
Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75

Query: 320 E 322
E
Sbjct: 76 E 76


>tr|A2XT48|A2XT48_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_15785 PE=4 SV=1
Length = 131

Score = 45.1 bits (105), Expect = 0.002
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +2

Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319
G NP GNY LY YAQKTLP RE+LK+G++ PG
Sbjct: 71 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 130

Query: 320 E 322
E
Sbjct: 131 E 131