DK943823 |
Clone id |
YMU02A01NGRL0004_B03 |
Library |
YMU02 |
Length |
503 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_B03. 5' end sequence. |
Accession |
DK943823 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GAACGTTCGTACAAGTAAAAGCAAAGACACGTCATACGATTAAACGAATGCCTGCAGATT TTGGTGCGCCATGGCGGAGGAGTACTCGGACTTCGATCCAAGCGAGGAAACTTTGAAGGC TGCAAGGAGTGCAGCTGGAGGCTTCAACCCTGCCCTAGTTGTGTTGCTGGTGGTGATCGG AGTGGTATTACTTTTTGTGGTTGGCAACTATGTCCTCTATTCGTATGCCCAGAAAACACT GCCTGCCAAAAAGAAAAAGCCAGTCTCAAAAAAGAAAATCAAGCGGGAAAGATTAAAGCG AGGCATCGCACCACCGGGAGAGTAGAACTTTACATTGTGTCCAACTTTTTGTCATTGAGT ATTTCTACTGGTTTGGTGCTATCCCCCTTTCGGATTTTAGTATTGAAATGCAAAGGGGAT GTCTAGGTGACTTGAAACTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P42552 |
Definition |
sp|P42552|S1FA_SPIOL DNA-binding protein S1FA OS=Spinacia oleracea |
Align length |
63 |
Score (bit) |
49.7 |
E-value |
5.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NTB9 |
Definition |
tr|A9NTB9|A9NTB9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
91 |
Score (bit) |
54.7 |
E-value |
2.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943823|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_B03, 5' (442 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NTB9|A9NTB9_PICSI Putative uncharacterized protein OS=Picea... 55 2e-06 tr|A7PT09|A7PT09_VITVI Chromosome chr8 scaffold_29, whole genome... 51 2e-05 tr|A9P8U4|A9P8U4_POPTR Putative uncharacterized protein OS=Popul... 49 1e-04 tr|A7NZG3|A7NZG3_VITVI Chromosome chr6 scaffold_3, whole genome ... 48 3e-04 tr|A5BKG4|A5BKG4_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04 tr|A9P8W5|A9P8W5_POPTR Putative uncharacterized protein OS=Popul... 46 0.001 tr|Q0JDF1|Q0JDF1_ORYSJ Os04g0408900 protein OS=Oryza sativa subs... 45 0.002 tr|Q01L73|Q01L73_ORYSA H0321H01.7 protein OS=Oryza sativa GN=H03... 45 0.002 tr|A2XT51|A2XT51_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002 tr|A2XT48|A2XT48_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002 tr|Q0JDF2|Q0JDF2_ORYSJ Os04g0408700 protein OS=Oryza sativa subs... 45 0.002 tr|Q01L74|Q01L74_ORYSA H0321H01.6 protein OS=Oryza sativa GN=H03... 45 0.002 tr|B6SLS1|B6SLS1_MAIZE DNA-binding protein S1FA2 OS=Zea mays PE=... 45 0.002 tr|A5WYH4|A5WYH4_WHEAT DNA-binding protein S1FA OS=Triticum aest... 45 0.002 tr|A2XT50|A2XT50_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002 tr|B6T1C3|B6T1C3_MAIZE DNA-binding protein S1FA2 OS=Zea mays PE=... 44 0.005 tr|B6SRM4|B6SRM4_MAIZE DNA-binding protein S1FA2 OS=Zea mays PE=... 42 0.012 tr|Q2FUC0|Q2FUC0_METHJ Zinc finger, AN1-type OS=Methanospirillum... 36 1.1 tr|A9RXV5|A9RXV5_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.4 tr|Q9FTR9|Q9FTR9_ORYSJ cDNA clone:001-125-D07, full insert seque... 34 3.1 tr|A2WK77|A2WK77_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.1 tr|A8I3Y6|A8I3Y6_CHLRE Predicted protein OS=Chlamydomonas reinha... 33 5.4
>tr|A9NTB9|A9NTB9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 90
Score = 54.7 bits (130), Expect = 2e-06 Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Frame = +2
Query: 71 MAEEYS---DFDPS----EETLKAARSAAGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYA 229 M E++S D DPS +E L ++A GFNP GNYVLY YA Sbjct: 1 MEEDFSSQADIDPSAFASQERL-LTKAAGRGFNPGLIVLLVVVGVLLVFIVGNYVLYMYA 59
Query: 230 QKTLPAXXXXXXXXXXXXRERLKRGIAPPGE 322 QKTLP RE+LK+GI+ PGE Sbjct: 60 QKTLPPKKKKPVSKKKMKREKLKQGISAPGE 90
>tr|A7PT09|A7PT09_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023165001 PE=4 SV=1 Length = 89
Score = 51.2 bits (121), Expect = 2e-05 Identities = 30/77 (38%), Positives = 36/77 (46%) Frame = +2
Query: 92 FDPSEETLKAARSAAGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXX 271 FD E +K A A GFNP GN++LY YAQKTLP Sbjct: 15 FDRMENMVKDAE--AKGFNPGLIVLLLVVGVLLVFLVGNFLLYMYAQKTLPRMKKKPVSK 72
Query: 272 XXXXRERLKRGIAPPGE 322 RERLK+G++ PGE Sbjct: 73 KKMKRERLKQGVSAPGE 89
>tr|A9P8U4|A9P8U4_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 88
Score = 48.9 bits (115), Expect = 1e-04 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Frame = +2
Query: 80 EYSDFDPSEETLKAARSAAG--GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXX 253 E+S+ PS + + A G NP GNYVLYSYAQKTLP Sbjct: 6 EFSNSPPSFQNMGDLIKDAEPKGLNPGLIVLLVIGGLLLTFLIGNYVLYSYAQKTLPPRK 65
Query: 254 XXXXXXXXXXRERLKRGIAPPGE 322 +ERLK+G++ PGE Sbjct: 66 KKPISKKKMKKERLKQGVSAPGE 88
>tr|A7NZG3|A7NZG3_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024502001 PE=4 SV=1 Length = 89
Score = 47.8 bits (112), Expect = 3e-04 Identities = 25/63 (39%), Positives = 29/63 (46%) Frame = +2
Query: 134 AGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAP 313 A GFNP GNY LY YAQKTLP +ERLK+G++ Sbjct: 27 AKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKKERLKQGVSA 86
Query: 314 PGE 322 PGE Sbjct: 87 PGE 89
>tr|A5BKG4|A5BKG4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033336 PE=4 SV=1 Length = 108
Score = 47.8 bits (112), Expect = 3e-04 Identities = 25/63 (39%), Positives = 29/63 (46%) Frame = +2
Query: 134 AGGFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAP 313 A GFNP GNY LY YAQKTLP +ERLK+G++ Sbjct: 46 AKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKKERLKQGVSA 105
Query: 314 PGE 322 PGE Sbjct: 106 PGE 108
>tr|A9P8W5|A9P8W5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 89
Score = 45.8 bits (107), Expect = 0.001 Identities = 23/61 (37%), Positives = 29/61 (47%) Frame = +2
Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319 G NP GN+VLY+YAQKTLP +ERLK+G++ PG Sbjct: 29 GLNPGLIVLLVIGGLLMSFLVGNFVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPG 88
Query: 320 E 322 E Sbjct: 89 E 89
>tr|Q0JDF1|Q0JDF1_ORYSJ Os04g0408900 protein OS=Oryza sativa subsp. japonica GN=Os04g0408900 PE=4 SV=1 Length = 76
Score = 45.1 bits (105), Expect = 0.002 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +2
Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319 G NP GNY LY YAQKTLP RE+LK+G++ PG Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75
Query: 320 E 322 E Sbjct: 76 E 76
>tr|Q01L73|Q01L73_ORYSA H0321H01.7 protein OS=Oryza sativa GN=H0321H01.7 PE=4 SV=1 Length = 76
Score = 45.1 bits (105), Expect = 0.002 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +2
Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319 G NP GNY LY YAQKTLP RE+LK+G++ PG Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75
Query: 320 E 322 E Sbjct: 76 E 76
>tr|A2XT51|A2XT51_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15788 PE=4 SV=1 Length = 76
Score = 45.1 bits (105), Expect = 0.002 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +2
Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319 G NP GNY LY YAQKTLP RE+LK+G++ PG Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75
Query: 320 E 322 E Sbjct: 76 E 76
>tr|A2XT48|A2XT48_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15785 PE=4 SV=1 Length = 131
Score = 45.1 bits (105), Expect = 0.002 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +2
Query: 140 GFNPAXXXXXXXXXXXXXXXXGNYVLYSYAQKTLPAXXXXXXXXXXXXRERLKRGIAPPG 319 G NP GNY LY YAQKTLP RE+LK+G++ PG Sbjct: 71 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 130
Query: 320 E 322 E Sbjct: 131 E 131
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