DK943923
Clone id YMU02A01NGRL0004_G11
Library
Length 254
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_G11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
TGCTATCTTTTTGAAACCCCATCCAAAGAAGGGATTCATCTCATAGGAGCCGCTGTTTAT
GACGATAACATTTTTATGTAAATCTATAAAATCTTTGTACATTTGCTGAATTACTCAGTT
GGCCGTAATCAAAGGCCGGCCCCGCCCCTTCTTTTTGGCACACTGTAATTACATCAGGGG
CAAAGAGGTTCATTTAAAAAAGTTTGTGTAGTTGGTGGAGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q63921
Definition sp|Q63921|PGH1_RAT Prostaglandin G/H synthase 1 OS=Rattus norvegicus
Align length 28
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943923|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_G11, 5'
(220 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q63921|PGH1_RAT Prostaglandin G/H synthase 1 OS=Rattus norveg... 30 3.7
sp|P22437|PGH1_MOUSE Prostaglandin G/H synthase 1 OS=Mus musculu... 29 8.3

>sp|Q63921|PGH1_RAT Prostaglandin G/H synthase 1 OS=Rattus
norvegicus GN=Ptgs1 PE=2 SV=2
Length = 602

Score = 30.0 bits (66), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3

Query: 96 CTFAELLSWP*SKAGPAPSFWHTVITSG 179
CT E+ +W S P+PSF H ++T G
Sbjct: 71 CTIPEIWTWLRSSLRPSPSFTHFLLTHG 98


>sp|P22437|PGH1_MOUSE Prostaglandin G/H synthase 1 OS=Mus musculus
GN=Ptgs1 PE=2 SV=1
Length = 602

Score = 28.9 bits (63), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3

Query: 96 CTFAELLSWP*SKAGPAPSFWHTVITSG 179
CT E+ +W + P+PSF H ++T G
Sbjct: 71 CTIPEIWTWLRNSLRPSPSFTHFLLTHG 98


tr_hit_id A0CH92
Definition tr|A0CH92|A0CH92_PARTE Chromosome undetermined scaffold_18, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 33
Score (bit) 33.1
E-value 7.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943923|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_G11, 5'
(220 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0CH92|A0CH92_PARTE Chromosome undetermined scaffold_18, whol... 33 7.2

>tr|A0CH92|A0CH92_PARTE Chromosome undetermined scaffold_18, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00007599001 PE=4 SV=1
Length = 351

Score = 33.1 bits (74), Expect = 7.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2

Query: 108 QQMYKDFIDLHKNVIVINSGSYEMNPFFGWGFK 10
Q + DF +++KNV IN + PF G+GFK
Sbjct: 228 QYKFDDFFNIYKNVNTINIEPNVLTPFHGYGFK 260