DK944055
Clone id YMU02A01NGRL0004_N10
Library
Length 255
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GGATAGCCTCAAGAAATGTGCAAGGCACACGTAGGACCAATGGAACACATGGTGCAGGAT
GGTGCCTTCGTGTAGTTTCGATCTGCGGAGGTGCTCAACAACAGCGGCCGTTGCACTTGA
TTGTATTGGGAGCTTGAGACGCAAAGAAGGGGAACTAAGGAGGCAAGAGAGGACAAAGCT
AAAAACTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944055|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N10, 5'
(227 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id Q0C354
Definition tr|Q0C354|Q0C354_HYPNA ATP-dependent RNA helicase RhlE OS=Hyphomonas neptunium (strain ATCC 15444)
Align length 47
Score (bit) 33.1
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944055|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N10, 5'
(227 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0C354|Q0C354_HYPNA ATP-dependent RNA helicase RhlE OS=Hyphom... 33 7.1

>tr|Q0C354|Q0C354_HYPNA ATP-dependent RNA helicase RhlE
OS=Hyphomonas neptunium (strain ATCC 15444) GN=rhlE PE=4
SV=1
Length = 464

Score = 33.1 bits (74), Expect = 7.1
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = +3

Query: 9 SRNVQGTRRTN-GTHGAGWCLRVVSICGGA-------QQQRPLHLIV 125
+R + G T+ GT+GAG LRVV +CGGA Q +R H++V
Sbjct: 89 TRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILV 135