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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944124
Clone id YMU02A01NGRL0005_A19
Library
Length 221
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTGCACAAGCTTAGAAAGCTCTCCAATGTCAAAGAATTTTAGAAGCAAATCCCCAATCCA
ACAAAAAAAATACATGTGCTCATCCGAGGGCCAAAGCTCATCATAGTTAAGACTTTGGAT
ATAAAGTCCCACTTTATTGAGTCAAAGACTTTTGCAAAATCCAATGACAGAAGTTAATGT
CATTTCTAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944124|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A19, 5'
         (192 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q7XSJ7
Definition tr|Q7XSJ7|Q7XSJ7_ORYSJ OSJNBb0078D11.8 protein OS=Oryza sativa subsp. japonica
Align length 35
Score (bit) 40.4
E-value 0.045
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944124|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A19, 5'
         (192 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XSJ7|Q7XSJ7_ORYSJ OSJNBb0078D11.8 protein OS=Oryza sativa s...    40   0.045
tr|A5BCE8|A5BCE8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|A5B5W8|A5B5W8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|Q5KQN8|Q5KQN8_ORYSJ Putative uncharacterized protein P0668H12...    39   0.100
tr|Q2R262|Q2R262_ORYSJ Retrotransposon protein, putative, unclas...    39   0.100
tr|A5BWH2|A5BWH2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.100
tr|A5C614|A5C614_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5BSZ6|A5BSZ6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5BJ61|A5BJ61_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5B0H6|A5B0H6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5AG21|A5AG21_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5C9Z7|A5C9Z7_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5C4L0|A5C4L0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5BXE3|A5BXE3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5BR45|A5BR45_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5BA26|A5BA26_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5B7M7|A5B7M7_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5AK79|A5AK79_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5AJR1|A5AJR1_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5AD48|A5AD48_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|Q9P8H7|Q9P8H7_CANAL Reverse transcriptase OS=Candida albicans...    39   0.17 
tr|Q59KQ0|Q59KQ0_CANAL Polyprotein of L1-like non-LTR retrotrans...    39   0.17 
tr|A5C481|A5C481_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A5BZE1|A5BZE1_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A5BNF8|A5BNF8_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A5BLN7|A5BLN7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A5B6Z7|A5B6Z7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|Q2QZT5|Q2QZT5_ORYSJ Retrotransposon protein, putative, unclas...    37   0.38 
tr|Q0IR67|Q0IR67_ORYSJ Os11g0672600 protein (Fragment) OS=Oryza ...    37   0.38 

>tr|Q7XSJ7|Q7XSJ7_ORYSJ OSJNBb0078D11.8 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBb0078D11.8 PE=4 SV=2
          Length = 1636

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 173  LLSLDFAKVFDSIKWDFISKVLTMMSFGPRMSTCI 69
            LL LD AK FDS+ W+F+ ++L  + FG +   CI
Sbjct: 1370 LLKLDIAKAFDSVSWEFLIELLRHLGFGSKWRDCI 1404


>tr|A5BCE8|A5BCE8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_013346 PE=4 SV=1
          Length = 2935

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 173  LLSLDFAKVFDSIKWDFISKVLTMMSFGPR----MSTCIFFVGLGI 48
            +  +DF KV+D +KWDF+  VL    F PR    MS C+  V   I
Sbjct: 1138 VFKIDFEKVYDHVKWDFLDHVLEKKGFSPRWRKWMSGCLSSVSYAI 1183



 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 173  LLSLDFAKVFDSIKWDFISKVLTMMSFGPR 84
            +  LD  K +DSI W F+ KVL  M FG R
Sbjct: 2535 ICKLDIEKAYDSINWKFLMKVLRKMGFGSR 2564


>tr|A5B5W8|A5B5W8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013265 PE=4 SV=1
          Length = 923

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPRMSTCIFF 63
           +  LD  K +DSI W+F+ KVL  M FGPR    I++
Sbjct: 457 ICKLDIEKAYDSINWNFLMKVLQKMGFGPRWMEWIWW 493


>tr|Q5KQN8|Q5KQN8_ORYSJ Putative uncharacterized protein P0668H12.14
           OS=Oryza sativa subsp. japonica GN=P0668H12.14 PE=4 SV=1
          Length = 1750

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPRMSTCI 69
           LL +D AK FD++ W+F+ ++L  + FG R   C+
Sbjct: 583 LLKIDIAKAFDTVSWEFLLELLRHLGFGARWRDCV 617


>tr|Q2R262|Q2R262_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g36880 PE=4 SV=1
          Length = 1193

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPRMSTCI 69
           LL +D AK FD++ W+F+ ++L  + FG R   C+
Sbjct: 473 LLKIDIAKAFDTVSWEFLLELLRHLGFGARWRDCV 507


>tr|A5BWH2|A5BWH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018352 PE=4 SV=1
          Length = 147

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPR 84
           LL LD  KVFD + WD++  ++T M FG R
Sbjct: 112 LLKLDIEKVFDHVNWDYLLSIMTKMGFGER 141


>tr|A5C614|A5C614_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007623 PE=4 SV=1
          Length = 1284

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPR----MSTCIFFVGLGI 48
           +  +DF K +D +KWDF+  VL    F PR    MS C+  V   I
Sbjct: 639 VFKIDFEKAYDHVKWDFLDHVLEKKGFSPRWRKWMSXCLSSVSYAI 684


>tr|A5BSZ6|A5BSZ6_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_024106 PE=4 SV=1
          Length = 1750

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 173  LLSLDFAKVFDSIKWDFISKVLTMMSFGPR----MSTCIFFVGLGI 48
            +  +DF K +D +KWDF+  VL    F PR    MS C+  V   I
Sbjct: 1179 VFKIDFEKAYDHVKWDFLDHVLEKKGFSPRWRKWMSGCLSSVSFAI 1224


>tr|A5BJ61|A5BJ61_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002429 PE=4 SV=1
          Length = 514

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPR 84
           LL +D  K FD + WDF+ KV++ M FG R
Sbjct: 94  LLKMDIEKAFDHVNWDFLMKVMSKMGFGHR 123


>tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018339 PE=4 SV=1
          Length = 410

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 173 LLSLDFAKVFDSIKWDFISKVLTMMSFGPR----MSTCIFFVGLGI 48
           +  LDF K +D ++WDF+ +VL    F PR    MS C+  V   I
Sbjct: 173 VFKLDFEKAYDHVRWDFLDQVLEKKGFSPRWRKWMSGCLSSVSYAI 218