DK944338
Clone id YMU02A01NGRL0005_L22
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_L22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
AGGTAGACCATGGGCATGTTGAAAGAGCACAAATGCAGGTGCTTGCAGACTGGATACGTT
TCTCCAATTTCAACTACAGCGCGGGGCCGGCGTAAAGGGTTGATGTATAATTGCGTCCTT
GCTTTTTGCTCTTCAAGCTTGAAAGCTCTGTGTCATTGTATGTCAACCACTCGAGGAGAA
GTCAACATTCTTTCTGTAGGCAATCCTCTCTAACTTGGGGGGACATACATTATGGACAGC
AGTCGCTTGAAGCATGTCCTGGTAGCAAGTGCTCTGGACTTTTTTTCGGAACCATGATCT
TTTAGAGGTTTTGCTATCACAACTGGAGAGAGCAAAATCAAAGCTGTCTTCCTATCCTTT
CTCTTTGGTGGTCTTCTTATTTGGCAAAAACTTTTGCATCGTGCAGCATATGTAGAATAG
AAAGTCACCTTAAGAAAAAAAAAGAAAAAGACGTTCCTGAGTGTTTTTCAATAAGAGCAG
GACTTCACAGCTTCTTACAATGTGGGATGTCTTTGATAGTTCCACCCAATTCTATCTTCT
CGTG
■■Homology search results ■■ -
sp_hit_id Q22236
Definition sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Caenorhabditis elegans
Align length 59
Score (bit) 33.5
E-value 0.68
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944338|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L22, 5'
(544 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Ca... 33 0.68
sp|B0S5A7|CTL5B_DANRE Choline transporter-like protein 5-B (Frag... 32 1.5
sp|Q04508|AMOB_NITEU Ammonia monooxygenase OS=Nitrosomonas europ... 32 2.0
sp|O08837|CDC5L_RAT Cell division cycle 5-related protein OS=Rat... 30 7.6
sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein OS=M... 30 7.6
sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo... 30 7.6
sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos ... 30 7.6
sp|P28363|RPA1_EUPOC DNA-directed RNA polymerase I subunit RPA1 ... 30 9.9
sp|B0JZD0|CTL5_XENTR Choline transporter-like protein 5 OS=Xenop... 30 9.9

>sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11
OS=Caenorhabditis elegans GN=spo-11 PE=2 SV=1
Length = 425

Score = 33.5 bits (75), Expect = 0.68
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = +1

Query: 124 FCSSSLKALCHCMSTTRGEVNILSVGNPL*LGG-TYIMDS-----SRLKHVLVASALDF 282
+ SS+K++C ++ +R +NILS G + G T+++++ +R++ VL+ AL F
Sbjct: 130 YLDSSIKSICELLNESRANLNILSCGRGIIRGAITFLVENVGVIDARVQEVLITDALLF 188


>sp|B0S5A7|CTL5B_DANRE Choline transporter-like protein 5-B
(Fragment) OS=Danio rerio GN=slc44a5b PE=3 SV=1
Length = 700

Score = 32.3 bits (72), Expect = 1.5
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3

Query: 195 CRQSSLTWGDIHYGQQSL-EACPGSKCSGLFFGTMIF*RFCYHNWREQNQSCLPILSLWW 371
C+ ++LT + Q ++ + CPGS+C+ F+G YH + Q C ++ LW
Sbjct: 379 CKYTNLTCDPETFSQSNVTKLCPGSQCTFAFYGG----ESLYHRYIFVLQLCNLLVFLWL 434

Query: 372 SSYLAKTFASCSICRIES--HLKKKKEKDVPEC 464
++ C++ + + +K D+P C
Sbjct: 435 VNFTI-ALGQCTLAGAFAAYYWALRKPADIPPC 466


>sp|Q04508|AMOB_NITEU Ammonia monooxygenase OS=Nitrosomonas europaea
GN=amoB1 PE=1 SV=2
Length = 420

Score = 32.0 bits (71), Expect = 2.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3

Query: 150 VSLYVNHSRRSQHSFCRQSSLTWGDIHYGQQSLEACPGSKCSGLF 284
VS H RSQ F R ++ W DI +G + + +K +G F
Sbjct: 32 VSTVAAHGERSQEPFLRMRTVQWYDIKWGPEVTKVNENAKITGKF 76


>sp|O08837|CDC5L_RAT Cell division cycle 5-related protein OS=Rattus
norvegicus GN=Cdc5l PE=1 SV=2
Length = 802

Score = 30.0 bits (66), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3

Query: 420 ESHLKKKKEKDVPECFSIRAGLHSFLQCGMSLIVPPNSI 536
+ HLK+KKE D+P +G+ F + L++P I
Sbjct: 264 KQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQI 302


>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein OS=Mus
musculus GN=Cdc5l PE=1 SV=2
Length = 802

Score = 30.0 bits (66), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3

Query: 420 ESHLKKKKEKDVPECFSIRAGLHSFLQCGMSLIVPPNSI 536
+ HLK+KKE D+P +G+ F + L++P I
Sbjct: 264 KQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQI 302


>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo
sapiens GN=CDC5L PE=1 SV=2
Length = 802

Score = 30.0 bits (66), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3

Query: 420 ESHLKKKKEKDVPECFSIRAGLHSFLQCGMSLIVPPNSI 536
+ HLK+KKE D+P +G+ F + L++P I
Sbjct: 264 KQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQI 302


>sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos
taurus GN=CDC5L PE=2 SV=1
Length = 802

Score = 30.0 bits (66), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3

Query: 420 ESHLKKKKEKDVPECFSIRAGLHSFLQCGMSLIVPPNSI 536
+ HLK+KKE D+P +G+ F + L++P I
Sbjct: 264 KQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQI 302


>sp|P28363|RPA1_EUPOC DNA-directed RNA polymerase I subunit RPA1
(Fragment) OS=Euplotes octocarinatus GN=RPA1 PE=3 SV=1
Length = 638

Score = 29.6 bits (65), Expect = 9.9
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -2

Query: 381 NKKTTKEKG*EDSFDFALSSCDSKTSKRSWFRKKVQSTCYQDMLQATAVHNVCPPKLERI 202
N +T EK D + + SK ++W + CY D A + N P L ++
Sbjct: 416 NLETESEKSKTQQIDLSKTEITSKQVIKAWAELQESVNCYLDSSLAAKLENKEKPGLRQL 475

Query: 201 AYRK 190
RK
Sbjct: 476 LERK 479


>sp|B0JZD0|CTL5_XENTR Choline transporter-like protein 5 OS=Xenopus
tropicalis GN=slc44a5 PE=2 SV=1
Length = 714

Score = 29.6 bits (65), Expect = 9.9
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Frame = +3

Query: 255 CPGSKCSGLFFGTMIF*RFCYHNWREQNQSCLPILSLWWSSY--------LAKTFASCSI 410
CPG++C+ F+G F YH + Q C + LW ++ LA FAS
Sbjct: 428 CPGAQCTFAFYGGESF----YHQYILIFQLCNVFVFLWLVNFSIALGQCTLAGAFAS--- 480

Query: 411 CRIESHLKKKKEKDVPEC 464
+ KK D+P C
Sbjct: 481 ----YYWAFKKPADIPAC 494


tr_hit_id B0S6Y0
Definition tr|B0S6Y0|B0S6Y0_DANRE Novel protein similar to H.sapiens TTN, titin (TTN) (Fragment) OS=Danio rerio
Align length 106
Score (bit) 33.9
E-value 5.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944338|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L22, 5'
(544 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0S6Y0|B0S6Y0_DANRE Novel protein similar to H.sapiens TTN, t... 34 5.7
tr|Q9FLW3|Q9FLW3_ARATH FRO2 homolog OS=Arabidopsis thaliana PE=4... 33 9.9
tr|Q8W110|Q8W110_ARATH AT5g23980/MZF18_14 OS=Arabidopsis thalian... 33 9.9

>tr|B0S6Y0|B0S6Y0_DANRE Novel protein similar to H.sapiens TTN, titin
(TTN) (Fragment) OS=Danio rerio GN=CH211-198B21.1-001
PE=1 SV=1
Length = 5618

Score = 33.9 bits (76), Expect = 5.7
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Frame = -3

Query: 542 REDRIGWNYQRHPTL*EAVKSCSY*KTLRNVXXXXFLKVTFYSTYAARCKSFCQIRRPPK 363
+ED+ GW ++ + K + KTL N+ KVTF S K C+I P
Sbjct: 4260 QEDKGGWGLTEDVSIKQQPKELFFEKTLNNITAEENSKVTFSSNIGNPVKFECEIEETPN 4319

Query: 362 ------------RKDRKTALI---LLSPVVIAKPLKDHGSEKKSRA 270
++ K +I S + + P KD E RA
Sbjct: 4320 VTFKWFKAGSEIKQSDKVRIISRQTTSSLELPSPTKDDSGEYSCRA 4365


>tr|Q9FLW3|Q9FLW3_ARATH FRO2 homolog OS=Arabidopsis thaliana PE=4
SV=1
Length = 703

Score = 33.1 bits (74), Expect = 9.9
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = -2

Query: 390 FLPNKKTTKEKG*EDSFDFALSSCDSKT---SKRSWFR---KKVQSTCYQDMLQATAVHN 229
FL KK KE + F + S + +T S SWF ++++S YQ ++QAT+VH
Sbjct: 592 FLWRKKQNKEG--DKEFKNQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHF 649

Query: 228 VCPPKLERI 202
P L++I
Sbjct: 650 GSKPNLKKI 658


>tr|Q8W110|Q8W110_ARATH AT5g23980/MZF18_14 OS=Arabidopsis thaliana
GN=At5g23980 PE=2 SV=1
Length = 699

Score = 33.1 bits (74), Expect = 9.9
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = -2

Query: 390 FLPNKKTTKEKG*EDSFDFALSSCDSKT---SKRSWFR---KKVQSTCYQDMLQATAVHN 229
FL KK KE + F + S + +T S SWF ++++S YQ ++QAT+VH
Sbjct: 588 FLWRKKQNKEG--DKEFKNQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHF 645

Query: 228 VCPPKLERI 202
P L++I
Sbjct: 646 GSKPNLKKI 654