DK944368
Clone id YMU02A01NGRL0005_N11
Library
Length 227
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GGCTGTACGTACTGTGTGGTACCTGGTACTCGTGGCAAGGAGCAGTCACGACTACCTGAT
GCAATCCGAAACGAAATGTTGGCATTGGGTGAGGCTGGGTATTGCTTGACAGACCAACAT
TTTGATGATAATGTGGTATTGTTTTTTCAAGTTCTTGTAATGTCTTGTACTTAAATCTAT
GTGCTATGTTGATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P73127
Definition sp|P73127|MIAB_SYNY3 (Dimethylallyl)adenosine tRNA methylthiotransferase miaB OS=Synechocystis sp. (strain PCC 6803)
Align length 33
Score (bit) 44.7
E-value 0.0001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944368|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N11, 5'
(198 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P73127|MIAB_SYNY3 (Dimethylallyl)adenosine tRNA methylthiotra... 45 1e-04
sp|O31778|MIAB_BACSU (Dimethylallyl)adenosine tRNA methylthiotra... 44 3e-04
sp|Q09316|CK5P1_CAEEL CDK5RAP1-like protein OS=Caenorhabditis el... 40 0.004
sp|Q9WZC1|MIAB_THEMA (Dimethylallyl)adenosine tRNA methylthiotra... 40 0.005
sp|Q54KV4|CK5P1_DICDI CDK5RAP1-like protein OS=Dictyostelium dis... 39 0.008
sp|O66638|MIAB_AQUAE (Dimethylallyl)adenosine tRNA methylthiotra... 39 0.011
sp|Q9VGZ1|CK5P1_DROME CDK5RAP1-like protein OS=Drosophila melano... 39 0.011
sp|Q9JLH6|CK5P1_RAT CDK5 regulatory subunit-associated protein 1... 37 0.031
sp|Q8BTW8|CK5P1_MOUSE CDK5 regulatory subunit-associated protein... 37 0.031
sp|Q9RCI2|MIAB_SALTY (Dimethylallyl)adenosine tRNA methylthiotra... 36 0.053
sp|Q57163|MIAB_HAEIN (Dimethylallyl)adenosine tRNA methylthiotra... 36 0.053
sp|P0AEI1|MIAB_ECOLI (Dimethylallyl)adenosine tRNA methylthiotra... 36 0.053
sp|P0AEI2|MIAB_ECOL6 (Dimethylallyl)adenosine tRNA methylthiotra... 36 0.053
sp|P0AEI3|MIAB_ECO57 (Dimethylallyl)adenosine tRNA methylthiotra... 36 0.053
sp|Q8H0V1|CK5P1_ARATH CDK5RAP1-like protein OS=Arabidopsis thali... 35 0.12
sp|O83735|MIAB_TREPA (Dimethylallyl)adenosine tRNA methylthiotra... 35 0.15
sp|Q9L699|MIAB_PASMU (Dimethylallyl)adenosine tRNA methylthiotra... 35 0.15
sp|Q51470|MIAB_PSEAE (Dimethylallyl)adenosine tRNA methylthiotra... 34 0.20
sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein OS=Oryza sativa subs... 34 0.20
sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein... 34 0.20
sp|P54462|YQEV_BACSU Putative methylthiotransferase yqeV OS=Baci... 33 0.34
sp|Q49842|MIAB_MYCLE (Dimethylallyl)adenosine tRNA methylthiotra... 33 0.34
sp|Q8K9C2|MIAB_BUCAP (Dimethylallyl)adenosine tRNA methylthiotra... 33 0.34
sp|P67085|MIAB_MYCTU (Dimethylallyl)adenosine tRNA methylthiotra... 32 0.99
sp|P67086|MIAB_MYCBO (Dimethylallyl)adenosine tRNA methylthiotra... 32 0.99
sp|P56131|MIAB_HELPY (Dimethylallyl)adenosine tRNA methylthiotra... 32 0.99
sp|Q9ZMG6|MIAB_HELPJ (Dimethylallyl)adenosine tRNA methylthiotra... 32 0.99
sp|Q9ZCE8|MIAB_RICPR (Dimethylallyl)adenosine tRNA methylthiotra... 32 1.3
sp|Q89AC2|MIAB_BUCBP (Dimethylallyl)adenosine tRNA methylthiotra... 32 1.3
sp|P57516|MIAB_BUCAI (Dimethylallyl)adenosine tRNA methylthiotra... 32 1.3

>sp|P73127|MIAB_SYNY3 (Dimethylallyl)adenosine tRNA
methylthiotransferase miaB OS=Synechocystis sp. (strain
PCC 6803) GN=miaB PE=3 SV=1
Length = 451

Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
C+YCVVP RG EQSR P+AI EM L + G+
Sbjct: 161 CSYCVVPNVRGVEQSRTPEAIYGEMEVLAQQGF 193


>sp|O31778|MIAB_BACSU (Dimethylallyl)adenosine tRNA
methylthiotransferase miaB OS=Bacillus subtilis GN=miaB
PE=3 SV=1
Length = 509

Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYC+VP TRGKE+SR P+ I E+ L GY
Sbjct: 225 CTYCIVPYTRGKERSRRPEDIIQEVRRLASEGY 257


>sp|Q09316|CK5P1_CAEEL CDK5RAP1-like protein OS=Caenorhabditis
elegans GN=F25B5.5 PE=2 SV=1
Length = 547

Score = 40.0 bits (92), Expect = 0.004
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP TRG+E+SR ++I E+ L + GY
Sbjct: 236 CTYCVVPFTRGRERSRPIESIVEEVQRLRDQGY 268


>sp|Q9WZC1|MIAB_THEMA (Dimethylallyl)adenosine tRNA
methylthiotransferase miaB OS=Thermotoga maritima
GN=miaB PE=1 SV=1
Length = 443

Score = 39.7 bits (91), Expect = 0.005
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYC+VP TRG+E+SR I E+ L E GY
Sbjct: 154 CTYCIVPYTRGRERSRPMADILEEVKKLAEQGY 186


>sp|Q54KV4|CK5P1_DICDI CDK5RAP1-like protein OS=Dictyostelium
discoideum GN=cdk5rap1 PE=3 SV=1
Length = 607

Score = 38.9 bits (89), Expect = 0.008
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
C+YC+VP TRG+E+SR D+I E+ L + G+
Sbjct: 269 CSYCIVPFTRGRERSRPIDSILREVKDLSDQGF 301


>sp|O66638|MIAB_AQUAE (Dimethylallyl)adenosine tRNA
methylthiotransferase miaB OS=Aquifex aeolicus GN=miaB
PE=3 SV=1
Length = 440

Score = 38.5 bits (88), Expect = 0.011
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAG 99
CTYCVVP TRGKE+SR +I +E+ L + G
Sbjct: 162 CTYCVVPRTRGKERSRALHSILDEVKRLVDDG 193


>sp|Q9VGZ1|CK5P1_DROME CDK5RAP1-like protein OS=Drosophila
melanogaster GN=CG6345 PE=2 SV=1
Length = 583

Score = 38.5 bits (88), Expect = 0.011
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAG 99
CTYC+VP TRG+E+SR +I E+ AL E G
Sbjct: 255 CTYCIVPFTRGRERSRPLASIVAEVKALAEQG 286


>sp|Q9JLH6|CK5P1_RAT CDK5 regulatory subunit-associated protein 1
OS=Rattus norvegicus GN=Cdk5rap1 PE=1 SV=1
Length = 586

Score = 37.0 bits (84), Expect = 0.031
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAG 99
C+YC+VP TRG+E+SR +I +E+ L E G
Sbjct: 259 CSYCIVPFTRGRERSRPVASILDEVRKLSEQG 290


>sp|Q8BTW8|CK5P1_MOUSE CDK5 regulatory subunit-associated protein 1
OS=Mus musculus GN=Cdk5rap1 PE=2 SV=2
Length = 588

Score = 37.0 bits (84), Expect = 0.031
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAG 99
C+YC+VP TRG+E+SR +I +E+ L E G
Sbjct: 261 CSYCIVPFTRGRERSRPVASILDEVRKLSEQG 292


>sp|Q9RCI2|MIAB_SALTY (Dimethylallyl)adenosine tRNA
methylthiotransferase miaB OS=Salmonella typhimurium
GN=miaB PE=1 SV=1
Length = 474

Score = 36.2 bits (82), Expect = 0.053
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAG 99
CTYCVVP TRG+E SR D I E+ L G
Sbjct: 161 CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQG 192


tr_hit_id A8JA29
Definition tr|A8JA29|A8JA29_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 33
Score (bit) 57.8
E-value 3.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944368|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N11, 5'
(198 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8JA29|A8JA29_CHLRE Predicted protein (Fragment) OS=Chlamydom... 58 3e-07
tr|B4WLS1|B4WLS1_9SYNE tRNA-i(6)A37 thiotransferase enzyme MiaB ... 54 5e-06
tr|B0JVM6|B0JVM6_MICAN tRNA-i(6)A37 modification enzyme OS=Micro... 53 7e-06
tr|Q7U5R0|Q7U5R0_SYNPX 2-methylthioadenine synthetase OS=Synecho... 53 9e-06
tr|Q7NE65|Q7NE65_GLOVI Glr4015 protein OS=Gloeobacter violaceus ... 53 9e-06
tr|B0C0E2|B0C0E2_ACAM1 tRNA-I(6)A37 thiotransferase enzyme MiaB ... 53 9e-06
tr|A4CW90|A4CW90_SYNPV Putative uncharacterized protein OS=Synec... 53 9e-06
tr|B7K993|B7K993_9CHRO RNA modification enzyme, MiaB family OS=C... 52 1e-05
tr|B4VNR0|B4VNR0_9CYAN tRNA-i(6)A37 thiotransferase enzyme MiaB ... 52 1e-05
tr|A8YF84|A8YF84_MICAE Similar to tr|Q4C4D1|Q4C4D1_CROWT Hypothe... 52 1e-05
tr|B1XQK7|B1XQK7_SYNP2 tRNA-i(6)A37 thiotransferase enzyme OS=Sy... 52 1e-05
tr|A5GML6|A5GML6_SYNPW 2-methylthioadenine synthetase OS=Synecho... 52 2e-05
tr|A0YTT7|A0YTT7_9CYAN TRNA-i(6)A37 modification enzyme MiaB OS=... 52 2e-05
tr|A5GRJ8|A5GRJ8_SYNR3 2-methylthioadenine synthetase OS=Synecho... 51 3e-05
tr|Q3ALB4|Q3ALB4_SYNSC Putative uncharacterized protein OS=Synec... 51 3e-05
tr|Q119H9|Q119H9_TRIEI tRNA-i(6)A37 thiotransferase enzyme MiaB ... 51 3e-05
tr|B5W2N4|B5W2N4_SPIMA RNA modification enzyme, MiaB family OS=A... 51 3e-05
tr|A0ZDG5|A0ZDG5_NODSP TRNA-i(6)A37 modification enzyme MiaB OS=... 51 3e-05
tr|Q46JG6|Q46JG6_PROMT tRNA-i(6)A37 thiotransferase enzyme MiaB ... 50 4e-05
tr|Q3M8N9|Q3M8N9_ANAVT tRNA-i(6)A37 modification enzyme MiaB OS=... 50 4e-05
tr|A2C471|A2C471_PROM1 2-methylthioadenine synthetase OS=Prochlo... 50 4e-05
tr|A3Z0E5|A3Z0E5_9SYNE Putative uncharacterized protein OS=Synec... 50 6e-05
tr|B7G524|B7G524_PHATR Predicted protein OS=Phaeodactylum tricor... 50 6e-05
tr|Q8DJB2|Q8DJB2_THEEB Tlr1315 protein OS=Thermosynechococcus el... 50 7e-05
tr|B2IT24|B2IT24_NOSP7 RNA modification enzyme, MiaB family OS=N... 50 7e-05
tr|B5INW4|B5INW4_9CHRO tRNA-i(6)A37 thiotransferase enzyme MiaB ... 50 7e-05
tr|A3ZA88|A3ZA88_9SYNE Putative uncharacterized protein OS=Synec... 50 7e-05
tr|Q05X18|Q05X18_9SYNE Putative uncharacterized protein OS=Synec... 49 1e-04
tr|Q8YXA3|Q8YXA3_ANASP Alr1312 protein OS=Anabaena sp. (strain P... 49 1e-04
tr|B1X3M0|B1X3M0_PAUCH Putative uncharacterized protein OS=Pauli... 49 1e-04

>tr|A8JA29|A8JA29_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_81764 PE=4
SV=1
Length = 542

Score = 57.8 bits (138), Expect = 3e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP TRG EQSR P+ IR EM+ALGEAGY
Sbjct: 252 CTYCVVPYTRGAEQSRRPEDIRREMMALGEAGY 284


>tr|B4WLS1|B4WLS1_9SYNE tRNA-i(6)A37 thiotransferase enzyme MiaB
OS=Synechococcus sp. PCC 7335 GN=S7335_5144 PE=4 SV=1
Length = 453

Score = 53.5 bits (127), Expect = 5e-06
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVPG RG EQSR +AIR EM ALG+ GY
Sbjct: 160 CTYCVVPGVRGLEQSRTKEAIRAEMAALGDQGY 192


>tr|B0JVM6|B0JVM6_MICAN tRNA-i(6)A37 modification enzyme
OS=Microcystis aeruginosa (strain NIES-843) GN=miaB PE=4
SV=1
Length = 446

Score = 53.1 bits (126), Expect = 7e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVPG RG EQSR P AIR EM LG+ GY
Sbjct: 161 CTYCVVPGVRGVEQSRTPAAIRAEMAQLGQQGY 193


>tr|Q7U5R0|Q7U5R0_SYNPX 2-methylthioadenine synthetase
OS=Synechococcus sp. (strain WH8102) GN=miaB PE=4 SV=1
Length = 460

Score = 52.8 bits (125), Expect = 9e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP RGKEQSRLP+AIR EM L GY
Sbjct: 165 CTYCVVPSVRGKEQSRLPEAIRLEMEGLAAQGY 197


>tr|Q7NE65|Q7NE65_GLOVI Glr4015 protein OS=Gloeobacter violaceus
GN=glr4015 PE=4 SV=1
Length = 441

Score = 52.8 bits (125), Expect = 9e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +1

Query: 1 GCTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
GCTYC+VP RG+EQSR P+AI+ E+ LG +GY
Sbjct: 164 GCTYCIVPSVRGREQSRTPEAIKAEICELGASGY 197


>tr|B0C0E2|B0C0E2_ACAM1 tRNA-I(6)A37 thiotransferase enzyme MiaB
OS=Acaryochloris marina (strain MBIC 11017) GN=miaB PE=4
SV=1
Length = 454

Score = 52.8 bits (125), Expect = 9e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP RG EQSR P+AIR EM+ LGE G+
Sbjct: 161 CTYCVVPNVRGVEQSRTPEAIRAEMVQLGEQGF 193


>tr|A4CW90|A4CW90_SYNPV Putative uncharacterized protein
OS=Synechococcus sp. (strain WH7805) GN=WH7805_05696
PE=4 SV=1
Length = 497

Score = 52.8 bits (125), Expect = 9e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP RGKEQSRLPDAIR EM L G+
Sbjct: 206 CTYCVVPSVRGKEQSRLPDAIRLEMEGLAAQGF 238


>tr|B7K993|B7K993_9CHRO RNA modification enzyme, MiaB family
OS=Cyanothece sp. PCC 7424 GN=PCC7424_0106 PE=4 SV=1
Length = 454

Score = 52.4 bits (124), Expect = 1e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP RG EQSR P AIR EM+ LG+ GY
Sbjct: 161 CTYCVVPNVRGVEQSRTPQAIRAEMVELGQQGY 193


>tr|B4VNR0|B4VNR0_9CYAN tRNA-i(6)A37 thiotransferase enzyme MiaB
OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_4863
PE=4 SV=1
Length = 451

Score = 52.4 bits (124), Expect = 1e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVP RG EQSR P+AIR EM LG+ GY
Sbjct: 161 CTYCVVPNVRGVEQSRTPEAIRAEMAELGQQGY 193


>tr|A8YF84|A8YF84_MICAE Similar to tr|Q4C4D1|Q4C4D1_CROWT
Hypothetical protein OS=Microcystis aeruginosa PCC 7806
GN=IPF_5491 PE=4 SV=1
Length = 446

Score = 52.4 bits (124), Expect = 1e-05
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = +1

Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102
CTYCVVPG RG EQSR P AIR EM LG+ GY
Sbjct: 161 CTYCVVPGVRGVEQSRTPAAIRAEMEQLGQQGY 193