DK944368 |
Clone id |
YMU02A01NGRL0005_N11 |
Library |
YMU02 |
Length |
227 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N11. 5' end sequence. |
Accession |
DK944368 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GGCTGTACGTACTGTGTGGTACCTGGTACTCGTGGCAAGGAGCAGTCACGACTACCTGAT GCAATCCGAAACGAAATGTTGGCATTGGGTGAGGCTGGGTATTGCTTGACAGACCAACAT TTTGATGATAATGTGGTATTGTTTTTTCAAGTTCTTGTAATGTCTTGTACTTAAATCTAT GTGCTATGTTGATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P73127 |
Definition |
sp|P73127|MIAB_SYNY3 (Dimethylallyl)adenosine tRNA methylthiotransferase miaB OS=Synechocystis sp. (strain PCC 6803) |
Align length |
33 |
Score (bit) |
44.7 |
E-value |
0.0001 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8JA29 |
Definition |
tr|A8JA29|A8JA29_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii |
Align length |
33 |
Score (bit) |
57.8 |
E-value |
3.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944368|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_N11, 5' (198 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8JA29|A8JA29_CHLRE Predicted protein (Fragment) OS=Chlamydom... 58 3e-07 tr|B4WLS1|B4WLS1_9SYNE tRNA-i(6)A37 thiotransferase enzyme MiaB ... 54 5e-06 tr|B0JVM6|B0JVM6_MICAN tRNA-i(6)A37 modification enzyme OS=Micro... 53 7e-06 tr|Q7U5R0|Q7U5R0_SYNPX 2-methylthioadenine synthetase OS=Synecho... 53 9e-06 tr|Q7NE65|Q7NE65_GLOVI Glr4015 protein OS=Gloeobacter violaceus ... 53 9e-06 tr|B0C0E2|B0C0E2_ACAM1 tRNA-I(6)A37 thiotransferase enzyme MiaB ... 53 9e-06 tr|A4CW90|A4CW90_SYNPV Putative uncharacterized protein OS=Synec... 53 9e-06 tr|B7K993|B7K993_9CHRO RNA modification enzyme, MiaB family OS=C... 52 1e-05 tr|B4VNR0|B4VNR0_9CYAN tRNA-i(6)A37 thiotransferase enzyme MiaB ... 52 1e-05 tr|A8YF84|A8YF84_MICAE Similar to tr|Q4C4D1|Q4C4D1_CROWT Hypothe... 52 1e-05 tr|B1XQK7|B1XQK7_SYNP2 tRNA-i(6)A37 thiotransferase enzyme OS=Sy... 52 1e-05 tr|A5GML6|A5GML6_SYNPW 2-methylthioadenine synthetase OS=Synecho... 52 2e-05 tr|A0YTT7|A0YTT7_9CYAN TRNA-i(6)A37 modification enzyme MiaB OS=... 52 2e-05 tr|A5GRJ8|A5GRJ8_SYNR3 2-methylthioadenine synthetase OS=Synecho... 51 3e-05 tr|Q3ALB4|Q3ALB4_SYNSC Putative uncharacterized protein OS=Synec... 51 3e-05 tr|Q119H9|Q119H9_TRIEI tRNA-i(6)A37 thiotransferase enzyme MiaB ... 51 3e-05 tr|B5W2N4|B5W2N4_SPIMA RNA modification enzyme, MiaB family OS=A... 51 3e-05 tr|A0ZDG5|A0ZDG5_NODSP TRNA-i(6)A37 modification enzyme MiaB OS=... 51 3e-05 tr|Q46JG6|Q46JG6_PROMT tRNA-i(6)A37 thiotransferase enzyme MiaB ... 50 4e-05 tr|Q3M8N9|Q3M8N9_ANAVT tRNA-i(6)A37 modification enzyme MiaB OS=... 50 4e-05 tr|A2C471|A2C471_PROM1 2-methylthioadenine synthetase OS=Prochlo... 50 4e-05 tr|A3Z0E5|A3Z0E5_9SYNE Putative uncharacterized protein OS=Synec... 50 6e-05 tr|B7G524|B7G524_PHATR Predicted protein OS=Phaeodactylum tricor... 50 6e-05 tr|Q8DJB2|Q8DJB2_THEEB Tlr1315 protein OS=Thermosynechococcus el... 50 7e-05 tr|B2IT24|B2IT24_NOSP7 RNA modification enzyme, MiaB family OS=N... 50 7e-05 tr|B5INW4|B5INW4_9CHRO tRNA-i(6)A37 thiotransferase enzyme MiaB ... 50 7e-05 tr|A3ZA88|A3ZA88_9SYNE Putative uncharacterized protein OS=Synec... 50 7e-05 tr|Q05X18|Q05X18_9SYNE Putative uncharacterized protein OS=Synec... 49 1e-04 tr|Q8YXA3|Q8YXA3_ANASP Alr1312 protein OS=Anabaena sp. (strain P... 49 1e-04 tr|B1X3M0|B1X3M0_PAUCH Putative uncharacterized protein OS=Pauli... 49 1e-04
>tr|A8JA29|A8JA29_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_81764 PE=4 SV=1 Length = 542
Score = 57.8 bits (138), Expect = 3e-07 Identities = 26/33 (78%), Positives = 28/33 (84%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVP TRG EQSR P+ IR EM+ALGEAGY Sbjct: 252 CTYCVVPYTRGAEQSRRPEDIRREMMALGEAGY 284
>tr|B4WLS1|B4WLS1_9SYNE tRNA-i(6)A37 thiotransferase enzyme MiaB OS=Synechococcus sp. PCC 7335 GN=S7335_5144 PE=4 SV=1 Length = 453
Score = 53.5 bits (127), Expect = 5e-06 Identities = 24/33 (72%), Positives = 26/33 (78%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVPG RG EQSR +AIR EM ALG+ GY Sbjct: 160 CTYCVVPGVRGLEQSRTKEAIRAEMAALGDQGY 192
>tr|B0JVM6|B0JVM6_MICAN tRNA-i(6)A37 modification enzyme OS=Microcystis aeruginosa (strain NIES-843) GN=miaB PE=4 SV=1 Length = 446
Score = 53.1 bits (126), Expect = 7e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVPG RG EQSR P AIR EM LG+ GY Sbjct: 161 CTYCVVPGVRGVEQSRTPAAIRAEMAQLGQQGY 193
>tr|Q7U5R0|Q7U5R0_SYNPX 2-methylthioadenine synthetase OS=Synechococcus sp. (strain WH8102) GN=miaB PE=4 SV=1 Length = 460
Score = 52.8 bits (125), Expect = 9e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVP RGKEQSRLP+AIR EM L GY Sbjct: 165 CTYCVVPSVRGKEQSRLPEAIRLEMEGLAAQGY 197
>tr|Q7NE65|Q7NE65_GLOVI Glr4015 protein OS=Gloeobacter violaceus GN=glr4015 PE=4 SV=1 Length = 441
Score = 52.8 bits (125), Expect = 9e-06 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +1
Query: 1 GCTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 GCTYC+VP RG+EQSR P+AI+ E+ LG +GY Sbjct: 164 GCTYCIVPSVRGREQSRTPEAIKAEICELGASGY 197
>tr|B0C0E2|B0C0E2_ACAM1 tRNA-I(6)A37 thiotransferase enzyme MiaB OS=Acaryochloris marina (strain MBIC 11017) GN=miaB PE=4 SV=1 Length = 454
Score = 52.8 bits (125), Expect = 9e-06 Identities = 23/33 (69%), Positives = 26/33 (78%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVP RG EQSR P+AIR EM+ LGE G+ Sbjct: 161 CTYCVVPNVRGVEQSRTPEAIRAEMVQLGEQGF 193
>tr|A4CW90|A4CW90_SYNPV Putative uncharacterized protein OS=Synechococcus sp. (strain WH7805) GN=WH7805_05696 PE=4 SV=1 Length = 497
Score = 52.8 bits (125), Expect = 9e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVP RGKEQSRLPDAIR EM L G+ Sbjct: 206 CTYCVVPSVRGKEQSRLPDAIRLEMEGLAAQGF 238
>tr|B7K993|B7K993_9CHRO RNA modification enzyme, MiaB family OS=Cyanothece sp. PCC 7424 GN=PCC7424_0106 PE=4 SV=1 Length = 454
Score = 52.4 bits (124), Expect = 1e-05 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVP RG EQSR P AIR EM+ LG+ GY Sbjct: 161 CTYCVVPNVRGVEQSRTPQAIRAEMVELGQQGY 193
>tr|B4VNR0|B4VNR0_9CYAN tRNA-i(6)A37 thiotransferase enzyme MiaB OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_4863 PE=4 SV=1 Length = 451
Score = 52.4 bits (124), Expect = 1e-05 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVP RG EQSR P+AIR EM LG+ GY Sbjct: 161 CTYCVVPNVRGVEQSRTPEAIRAEMAELGQQGY 193
>tr|A8YF84|A8YF84_MICAE Similar to tr|Q4C4D1|Q4C4D1_CROWT Hypothetical protein OS=Microcystis aeruginosa PCC 7806 GN=IPF_5491 PE=4 SV=1 Length = 446
Score = 52.4 bits (124), Expect = 1e-05 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = +1
Query: 4 CTYCVVPGTRGKEQSRLPDAIRNEMLALGEAGY 102 CTYCVVPG RG EQSR P AIR EM LG+ GY Sbjct: 161 CTYCVVPGVRGVEQSRTPAAIRAEMEQLGQQGY 193
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