DK944463
Clone id YMU02A01NGRL0006_C09
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_C09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
ATGTCTGCCGTGCCTACGAAGGTTGTCCTACCCTACATGCTGGGCTCCTTCGCCCTCGCT
TACGTTTTCTGGGATGTTACCCGGCACAAGAAGATCTTTGGAGGTACTGTTCCGCGTACC
CTCACAAAAGAATGGGAAGAAGCGACAGCAAGGAAGTTTGATGAAGGCTGGCCCCGGGTT
GCTGGTCCACCAGTGGTCATGAATCCCCTGACTCGACAGAACTACAGACTCGTTGAGGCA
GAGGAGGAGTGAGGCAGAGGGGGGTAGAGAAAAAACATCTTCTTCTTTTTAAGTGCCACG
AGCAGAAGTTTCTAGTAACGACATATCTGATTGGTGTACACTCTGGTCGACAGAATAAAT
GCTTTTTATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P06810
Definition sp|P06810|COX5_NEUCR Cytochrome c oxidase polypeptide 5, mitochondrial OS=Neurospora crassa
Align length 43
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944463|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_C09, 5'
(372 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P06810|COX5_NEUCR Cytochrome c oxidase polypeptide 5, mitocho... 32 1.3
sp|Q7PQ25|CCDCX_ANOGA Coiled-coil domain-containing protein AGAP... 31 2.2
sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Sc... 30 2.9
sp|Q6CKE2|ATG5_KLULA Autophagy protein 5 OS=Kluyveromyces lactis... 30 4.9
sp|P27955|POLG_HCVH7 Genome polyprotein (Fragment) OS=Hepatitis ... 30 4.9
sp|Q9H0W5|CCDC8_HUMAN Coiled-coil domain-containing protein 8 OS... 30 4.9
sp|Q8TCT7|PSL1_HUMAN Signal peptide peptidase-like 2B OS=Homo sa... 29 6.4

>sp|P06810|COX5_NEUCR Cytochrome c oxidase polypeptide 5,
mitochondrial OS=Neurospora crassa GN=cya-4 PE=3 SV=2
Length = 171

Score = 31.6 bits (70), Expect = 1.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1

Query: 19 KVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLTKEWEEAT 147
K VL Y + L++V + R F P T+TKEW+EAT
Sbjct: 99 KKVLAYTVAGVFLSFVIFATMR---AFAKPPPATMTKEWQEAT 138


>sp|Q7PQ25|CCDCX_ANOGA Coiled-coil domain-containing protein
AGAP005037 OS=Anopheles gambiae GN=AGAP005037 PE=4 SV=4
Length = 1102

Score = 30.8 bits (68), Expect = 2.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Frame = -3

Query: 334 PIRYVVTRNFCSWHLK-------RRRCFFSTPLCLTPPLPQ-----RVCSSVESGDS*PL 191
P R+ + + WH + R +F +P CL P LPQ RV + G PL
Sbjct: 63 PRRHTLGGDMLQWHKECPHALTIARLSYFHSPFCLYPLLPQQTPQMRVYTPTNQG---PL 119

Query: 190 VDQQPG 173
D PG
Sbjct: 120 FDDDPG 125


>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit
OS=Schizosaccharomyces pombe GN=rev3 PE=2 SV=1
Length = 1480

Score = 30.4 bits (67), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2

Query: 50 SPSLTFSGMLPGTRRSLEVLFRVPSQKNGKKRQQGSLMKAGPGL 181
SPSL G P T+R +E +P++ + QG KAG L
Sbjct: 445 SPSLRLKGGSPITKREIEFCRDLPNRPTSSEPNQGDTRKAGKRL 488


>sp|Q6CKE2|ATG5_KLULA Autophagy protein 5 OS=Kluyveromyces lactis
GN=ATG5 PE=3 SV=1
Length = 271

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1

Query: 228 SVVLSSQGIHDHWWTSNPG-PAFIKLPCCRFFPFFCEGTRNSTSKD 94
+V+++ + + WW G P + PC F F C + ST K+
Sbjct: 59 NVIVTYENPYKQWWFEYDGVPVPWEYPCGVLFDFLCNSSTTSTGKE 104


>sp|P27955|POLG_HCVH7 Genome polyprotein (Fragment) OS=Hepatitis C
virus (isolate HCT27) PE=3 SV=1
Length = 309

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +2

Query: 2 CLPCLRRLSYPTCWAP-SPSL-TFSGMLPGT--RRSLEVL 109
C+PC+R + CW P +P++ T G LP T RR +++L
Sbjct: 98 CVPCVREGNASKCWVPVAPTVATRDGNLPATQLRRHIDLL 137


>sp|Q9H0W5|CCDC8_HUMAN Coiled-coil domain-containing protein 8
OS=Homo sapiens GN=CCDC8 PE=1 SV=2
Length = 538

Score = 29.6 bits (65), Expect = 4.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3

Query: 349 RPECTPIRYVVTRNFCSWHLKRRRCFFSTPLCLTPPLPQRV 227
R + +R+ F SW KRRR F+ TP P LP+RV
Sbjct: 472 RKQVKTVRFQTPGRF-SWFCKRRRAFWHTP--RLPTLPKRV 509


>sp|Q8TCT7|PSL1_HUMAN Signal peptide peptidase-like 2B OS=Homo
sapiens GN=SPPL2B PE=1 SV=2
Length = 592

Score = 29.3 bits (64), Expect = 6.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2

Query: 2 CL-PCLRRLSYPTCWAPSPSLTFSGMLPGTRRSLEVLFRV 118
CL PC+RRL + C P+ SL + P R L LF V
Sbjct: 266 CLAPCVRRLPFGKCRIPNNSLPYFHKRPQARMLLLALFCV 305


tr_hit_id A9P9Z0
Definition tr|A9P9Z0|A9P9Z0_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 71
Score (bit) 85.5
E-value 1.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944463|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_C09, 5'
(372 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9P9Z0|A9P9Z0_POPTR Putative uncharacterized protein OS=Popul... 86 1e-15
tr|A9TZZ1|A9TZZ1_PHYPA Predicted protein OS=Physcomitrella paten... 84 3e-15
tr|A9PAX5|A9PAX5_POPTR Putative uncharacterized protein OS=Popul... 84 5e-15
tr|A9NLC3|A9NLC3_PICSI Putative uncharacterized protein OS=Picea... 83 6e-15
tr|Q9LWT2|Q9LWT2_ORYSJ Os06g0114500 protein OS=Oryza sativa subs... 79 1e-13
tr|B4YYB3|B4YYB3_THEHA ST103-2 OS=Thellungiella halophila PE=4 SV=1 79 1e-13
tr|A2Y8J3|A2Y8J3_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13
tr|Q2HIQ2|Q2HIQ2_ARATH At1g01170 OS=Arabidopsis thaliana PE=4 SV=1 79 1e-13
tr|Q8GXJ9|Q8GXJ9_ARATH Putative uncharacterized protein At1g0117... 77 3e-13
tr|Q01IC8|Q01IC8_ORYSA OSIGBa0092E01.7 protein (H0306B06.11 prot... 76 9e-13
tr|A6N1R6|A6N1R6_ORYSI Atozi1 (Fragment) OS=Oryza sativa subsp. ... 76 9e-13
tr|A2XV48|A2XV48_ORYSI Putative uncharacterized protein OS=Oryza... 76 9e-13
tr|Q9M4S0|Q9M4S0_ORYSA Stress-inducible protein OS=Oryza sativa ... 75 2e-12
tr|Q9LWS6|Q9LWS6_ORYSJ Os06g0115100 protein OS=Oryza sativa subs... 75 2e-12
tr|Q7XQH9|Q7XQH9_ORYSJ OSJNBa0067K08.15 protein (Putative unchar... 75 2e-12
tr|Q0JC18|Q0JC18_ORYSJ Os04g0497300 protein OS=Oryza sativa subs... 75 2e-12
tr|A2Y8J7|A2Y8J7_ORYSI Putative uncharacterized protein OS=Oryza... 75 2e-12
tr|B6SHY0|B6SHY0_MAIZE ATOZI1 OS=Zea mays PE=4 SV=1 74 4e-12
tr|Q53PM1|Q53PM1_ORYSJ Ozone-responsive stress-related protein, ... 73 6e-12
tr|Q0IUE8|Q0IUE8_ORYSJ Os11g0161200 protein OS=Oryza sativa subs... 73 6e-12
tr|A2ZBR8|A2ZBR8_ORYSI Putative uncharacterized protein OS=Oryza... 73 6e-12
tr|A2ZBS0|A2ZBS0_ORYSI Putative uncharacterized protein OS=Oryza... 72 2e-11
tr|Q38842|Q38842_ARATH ATOZI1 protein (Stress-induced protein OZ... 70 4e-11
tr|Q9MAL8|Q9MAL8_ARATH T25K16.16 OS=Arabidopsis thaliana PE=4 SV=1 69 1e-10
tr|Q6K1X2|Q6K1X2_ORYSJ Os02g0609200 protein OS=Oryza sativa subs... 68 2e-10
tr|A2X725|A2X725_ORYSI Putative uncharacterized protein OS=Oryza... 68 2e-10
tr|A7QBK1|A7QBK1_VITVI Chromosome chr13 scaffold_74, whole genom... 66 8e-10
tr|A4S3B7|A4S3B7_OSTLU Predicted protein OS=Ostreococcus lucimar... 41 0.034
tr|B4V3K4|B4V3K4_9ACTO Putative uncharacterized protein OS=Strep... 35 1.9
tr|B2CNB2|B2CNB2_9HEPC Polyprotein OS=Hepatitis C virus subtype ... 34 3.2

>tr|A9P9Z0|A9P9Z0_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 79

Score = 85.5 bits (210), Expect = 1e-15
Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +1

Query: 16 TKVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPP 192
TK ++ ++GSFA+AYV V KKIFGGT PRT++ KEW E T +KF + WPR GPP
Sbjct: 3 TKYIVSALVGSFAIAYVCDYVVSDKKIFGGTTPRTVSNKEWWEETDKKF-QAWPRTGGPP 61

Query: 193 VVMNPLTRQNY 225
VVMNP+TRQN+
Sbjct: 62 VVMNPITRQNF 72


>tr|A9TZZ1|A9TZZ1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_199922 PE=4 SV=1
Length = 79

Score = 84.3 bits (207), Expect = 3e-15
Identities = 37/71 (52%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +1

Query: 16 TKVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTL-TKEWEEATARKFDEGWPRVAGPP 192
+KV++P + G+ ++Y FWD++R++K+FGGTVP T EWE+ T +K D WPR A P
Sbjct: 7 SKVIMPALAGTCVVSYAFWDLSRNRKLFGGTVPITAQNSEWEKETGKKLD-AWPREAAGP 65

Query: 193 VVMNPLTRQNY 225
VVMNP++RQNY
Sbjct: 66 VVMNPISRQNY 76


>tr|A9PAX5|A9PAX5_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 79

Score = 83.6 bits (205), Expect = 5e-15
Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = +1

Query: 16 TKVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPP 192
T + ++GSFALAYV + KKIFGGT PRT++ KEW E T RKF + WPR GPP
Sbjct: 3 TTYIASAIVGSFALAYVCDHLVSDKKIFGGTTPRTVSNKEWWEETDRKF-QAWPRTGGPP 61

Query: 193 VVMNPLTRQNY 225
VVMNP+TRQN+
Sbjct: 62 VVMNPITRQNF 72


>tr|A9NLC3|A9NLC3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 81

Score = 83.2 bits (204), Expect = 6e-15
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +1

Query: 19 KVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPPV 195
KVV+ ++GS +YV +DV HK IFGG+VPRT+ K W E T +KF + WPR AGPPV
Sbjct: 4 KVVISSLVGSLVASYVVYDVISHKMIFGGSVPRTVADKGWWEETDKKF-QAWPREAGPPV 62

Query: 196 VMNPLTRQNY 225
VMNP++RQN+
Sbjct: 63 VMNPISRQNF 72


>tr|Q9LWT2|Q9LWT2_ORYSJ Os06g0114500 protein OS=Oryza sativa subsp.
japonica GN=P0541H01.27 PE=4 SV=1
Length = 79

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +1

Query: 19 KVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPPV 195
K + ++GSFA++YV KKIFGGT P T++ KEW +AT +KF + WPR AGPPV
Sbjct: 4 KYIAAGLVGSFAISYVCDHFIAEKKIFGGTTPHTVSDKEWWQATDKKF-QAWPRTAGPPV 62

Query: 196 VMNPLTRQNY 225
VMNP++RQN+
Sbjct: 63 VMNPISRQNF 72


>tr|B4YYB3|B4YYB3_THEHA ST103-2 OS=Thellungiella halophila PE=4 SV=1
Length = 85

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +1

Query: 4 SAVPTKVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRV 180
+A K ++ ++GSF ++YVF + KIFGGT P T++ KEW +AT KF + WPR
Sbjct: 5 AAGQAKYIIGALIGSFGISYVFDKLISDNKIFGGTTPGTVSNKEWWKATDEKF-QAWPRT 63

Query: 181 AGPPVVMNPLTRQNY 225
AGPPVVMNP++RQN+
Sbjct: 64 AGPPVVMNPISRQNF 78


>tr|A2Y8J3|A2Y8J3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21374 PE=4 SV=1
Length = 79

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +1

Query: 19 KVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPPV 195
K + ++GSFA++YV KKIFGGT P T++ KEW +AT +KF + WPR AGPPV
Sbjct: 4 KYIAAGLVGSFAISYVCDHFIAEKKIFGGTTPHTVSDKEWWQATDKKF-QAWPRTAGPPV 62

Query: 196 VMNPLTRQNY 225
VMNP++RQN+
Sbjct: 63 VMNPISRQNF 72


>tr|Q2HIQ2|Q2HIQ2_ARATH At1g01170 OS=Arabidopsis thaliana PE=4 SV=1
Length = 83

Score = 78.6 bits (192), Expect = 1e-13
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +1

Query: 19 KVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPPV 195
K ++ ++GSF ++Y+F V KIFGGT P T++ KEW AT KF + WPR AGPPV
Sbjct: 8 KYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKF-QAWPRTAGPPV 66

Query: 196 VMNPLTRQNY 225
VMNP++RQN+
Sbjct: 67 VMNPISRQNF 76


>tr|Q8GXJ9|Q8GXJ9_ARATH Putative uncharacterized protein
At1g01170/F6F3_5 OS=Arabidopsis thaliana
GN=At1g01170/F6F3_5 PE=4 SV=1
Length = 83

Score = 77.4 bits (189), Expect = 3e-13
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +1

Query: 19 KVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPPV 195
K ++ ++GS+ ++Y+F V KIFGGT P T++ KEW AT KF + WPR AGPPV
Sbjct: 8 KYIIGALIGSYGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKF-QAWPRTAGPPV 66

Query: 196 VMNPLTRQNY 225
VMNP++RQN+
Sbjct: 67 VMNPISRQNF 76


>tr|Q01IC8|Q01IC8_ORYSA OSIGBa0092E01.7 protein (H0306B06.11
protein) OS=Oryza sativa GN=OSIGBa0092E01.7 PE=4 SV=1
Length = 89

Score = 75.9 bits (185), Expect = 9e-13
Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +1

Query: 16 TKVVLPYMLGSFALAYVFWDVTRHKKIFGGTVPRTLT-KEWEEATARKFDEGWPRVAGPP 192
TK ++ + SFA AYV KK+ GGT PRT+ KEW + T K D WPRVAG P
Sbjct: 3 TKYIVGSVTASFAFAYVCGVYFADKKVLGGTTPRTVADKEWGKVTEEKLD-AWPRVAGKP 61

Query: 193 VVMNPLTRQNYRLVE 237
V MNP+TRQNY LV+
Sbjct: 62 VAMNPVTRQNYVLVK 76