DK944540
Clone id YMU02A01NGRL0006_G13
Library
Length 359
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_G13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GTATCTTCTCTCCTGCTGCTGTTCAAATGGTGGAGGGCAGGTGGCTTAAATTAGTCCAAA
ATAAAGGGTAACGCTTCGTTGCAACCTTGTATTTGCTGGAAGTACTGCCAACCAGCTGAG
GAAACGACATTTTGTCTGCGAAAGCGCTCAAACTCTCTTGTCCATAGTTATCATGGGGAT
GGGATCATACATTGTTAAGAATACTCGAGGACTCAACTGCTTTCAAGTGAGTGTGGAAGC
TTGCAACTGTACAGAAAGCTACAAGTTCTATGAGAGGAAGGTTGATTAATTCTGACNAAN
AAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A5WUN7
Definition sp|A5WUN7|CAMP1_DANRE Calmodulin-regulated spectrin-associated protein 1 OS=Danio rerio
Align length 30
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944540|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_G13, 5'
(297 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A5WUN7|CAMP1_DANRE Calmodulin-regulated spectrin-associated p... 30 3.8
sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus ... 29 8.5

>sp|A5WUN7|CAMP1_DANRE Calmodulin-regulated spectrin-associated
protein 1 OS=Danio rerio GN=camsap1 PE=3 SV=1
Length = 1558

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +1

Query: 100 KYCQPAEETTFCLRKRSNSLVHSYHGDGII 189
K QPAEE+T C R RSNSL H G +
Sbjct: 430 KKAQPAEESTAC-RNRSNSLTQEGHPRGSV 458


>sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus
brevis GN=xylT PE=3 SV=1
Length = 457

Score = 28.9 bits (63), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2

Query: 164 WTREFERFRRQNVVSSAGWQYFQQIQGCNEAL 69
W+ F + R +++ G FQQ+ GCN L
Sbjct: 232 WSELFGKMVRPSLIIGIGLAIFQQVMGCNTVL 263


tr_hit_id A0CPE4
Definition tr|A0CPE4|A0CPE4_PARTE Chromosome undetermined scaffold_23, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 58
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944540|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_G13, 5'
(297 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0CPE4|A0CPE4_PARTE Chromosome undetermined scaffold_23, whol... 35 2.4

>tr|A0CPE4|A0CPE4_PARTE Chromosome undetermined scaffold_23, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00009052001 PE=4 SV=1
Length = 2387

Score = 34.7 bits (78), Expect = 2.4
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2

Query: 98 GSTANQLRKRHFVCESAQTLLSIVIMGMGSYIVKNTRGLNCFQVSVEACNCTESYKFY 271
G NQ+ + +C S + + +V + + + + + G NCF V V+ NC+++Y Y
Sbjct: 546 GGKCNQVTQFRELCTSYRNVSKLVCTSLETQLCQYSNG-NCFLVDVQPTNCSDTYNRY 602