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NBDC - LSDB Archive
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DK944557
Clone id YMU02A01NGRL0006_H06
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_H06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTGTGTAATTTCAAAGCCCTAGCTTGCAGCTCTTCGTCCCCCTCACTTGACAGCGCAGG
GAGAACGTCTTCTGGTGGCTATGGCGGACGGCTTTGTAAAATCGATTCCGAAGGAAAGGC
CCGGAAGGTTGTTGGTTGCTCCTGCGTTGTTGTGAAGGACTATGGAGAAGAAACGGAGGG
CTTGAATGTTGTGCAGGAGTACCTCAAAAGTCAATGAACACTTTCAATTTCGCTTGTCGG
CTTATCACTTTTGAGGCTCCAATGCTCCATGGATGTAGAGGGAATTAACTCACAGGAAAA
AAGAAGTTTTTGTCCAATTTTTGTAGAACTGATTTTTACATCAGAATATGGGCGAAGCTT
TATGGTTTTCTTTGTGAAAAGCCTGATTTTTTTTGCTGGAATTATAGAATTTTCATATGA
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9XHS0
Definition sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12 OS=Hordeum vulgare
Align length 41
Score (bit) 80.9
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944557|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H06, 5'
         (422 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12 OS=Hordeum vulgar...    81   2e-15
sp|O13019|RS12_ORENI 40S ribosomal protein S12 OS=Oreochromis ni...    67   2e-11
sp|Q9SKZ3|RS122_ARATH 40S ribosomal protein S12-2 OS=Arabidopsis...    67   2e-11
sp|Q9S9P1|RS121_ARATH 40S ribosomal protein S12-1 OS=Arabidopsis...    67   4e-11
sp|P47840|RS12_XENLA 40S ribosomal protein S12 OS=Xenopus laevis...    65   8e-11
sp|P63324|RS12_RAT 40S ribosomal protein S12 OS=Rattus norvegicu...    65   8e-11
sp|P46405|RS12_PIG 40S ribosomal protein S12 OS=Sus scrofa GN=RP...    65   8e-11
sp|P63323|RS12_MOUSE 40S ribosomal protein S12 OS=Mus musculus G...    65   8e-11
sp|P25398|RS12_HUMAN 40S ribosomal protein S12 OS=Homo sapiens G...    65   8e-11
sp|P84175|RS12_CHICK 40S ribosomal protein S12 OS=Gallus gallus ...    65   8e-11
sp|Q76I81|RS12_BOVIN 40S ribosomal protein S12 OS=Bos taurus GN=...    65   8e-11
sp|Q9SMI3|RS12_CYAPA 40S ribosomal protein S12 OS=Cyanophora par...    62   9e-10
sp|P80455|RS12_DROME 40S ribosomal protein S12 OS=Drosophila mel...    60   5e-09
sp|P49196|RS12_CAEEL 40S ribosomal protein S12 OS=Caenorhabditis...    51   2e-06
sp|O59936|RS12_ERYGR 40S ribosomal protein S12 OS=Erysiphe grami...    49   8e-06
sp|O14062|RS12A_SCHPO 40S ribosomal protein S12-A OS=Schizosacch...    49   8e-06
sp|P48589|RS12_YEAST 40S ribosomal protein S12 OS=Saccharomyces ...    48   1e-05
sp|O74322|RS12B_SCHPO 40S ribosomal protein S12-B OS=Schizosacch...    48   1e-05
sp|Q54PX9|RS12_DICDI 40S ribosomal protein S12 OS=Dictyostelium ...    46   7e-05
sp|O97249|RS12_PLAF7 40S ribosomal protein S12 OS=Plasmodium fal...    39   0.008
sp|Q03253|RS12_TRYBB 40S ribosomal protein S12 OS=Trypanosoma br...    38   0.019
sp|Q8TR73|COOS2_METAC Carbon monoxide dehydrogenase 2 OS=Methano...    34   0.20 
sp|Q8PUN1|COOS2_METMA Carbon monoxide dehydrogenase 2 OS=Methano...    33   0.35 
sp|P55988|ATPB_HELPY ATP synthase subunit beta OS=Helicobacter p...    31   2.3  
sp|Q9ZK81|ATPB_HELPJ ATP synthase subunit beta OS=Helicobacter p...    30   3.0  
sp|Q3ASW4|NUOH_CHLCH NADH-quinone oxidoreductase subunit H OS=Ch...    30   5.0  
sp|Q1CSD5|ATPB_HELPH ATP synthase subunit beta OS=Helicobacter p...    30   5.0  
sp|Q17Y78|ATPB_HELAH ATP synthase subunit beta OS=Helicobacter a...    29   6.6  
sp|Q90773|CEPU1_CHICK Protein CEPU-1 OS=Gallus gallus PE=1 SV=1        29   8.6  

>sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12 OS=Hordeum vulgare
           GN=RPS12 PE=2 SV=1
          Length = 143

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 35/41 (85%), Positives = 41/41 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSQ 214
           LCKID+EGKARKVVGCSC+VVKDYGEE+EGLN+VQ+Y+KSQ
Sbjct: 103 LCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKSQ 143


>sp|O13019|RS12_ORENI 40S ribosomal protein S12 OS=Oreochromis
           niloticus GN=rps12 PE=2 SV=3
          Length = 132

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSQ 214
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY KS+
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKSK 131


>sp|Q9SKZ3|RS122_ARATH 40S ribosomal protein S12-2 OS=Arabidopsis
           thaliana GN=RPS12C PE=2 SV=1
          Length = 144

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 29/40 (72%), Positives = 36/40 (90%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEG ARKVVGCSC+V+KD+GEET  LN+V+++L S
Sbjct: 104 LCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDS 143


>sp|Q9S9P1|RS121_ARATH 40S ribosomal protein S12-1 OS=Arabidopsis
           thaliana GN=RPS12A PE=2 SV=1
          Length = 144

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSQ 214
           LCKIDSEG ARKVVGCSC+VVKD+GEET  L++V +++ SQ
Sbjct: 104 LCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIASQ 144


>sp|P47840|RS12_XENLA 40S ribosomal protein S12 OS=Xenopus laevis
           GN=rps12 PE=2 SV=2
          Length = 132

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 208
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P63324|RS12_RAT 40S ribosomal protein S12 OS=Rattus norvegicus
           GN=Rps12 PE=1 SV=2
          Length = 132

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 208
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P46405|RS12_PIG 40S ribosomal protein S12 OS=Sus scrofa GN=RPS12
           PE=2 SV=2
          Length = 132

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 208
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P63323|RS12_MOUSE 40S ribosomal protein S12 OS=Mus musculus
           GN=Rps12 PE=1 SV=2
          Length = 132

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 208
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P25398|RS12_HUMAN 40S ribosomal protein S12 OS=Homo sapiens
           GN=RPS12 PE=1 SV=3
          Length = 132

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 208
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P84175|RS12_CHICK 40S ribosomal protein S12 OS=Gallus gallus
           GN=RPS12 PE=1 SV=2
          Length = 132

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 208
           LCKID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
tr_hit_id A9TAH6
Definition tr|A9TAH6|A9TAH6_PHYPA 40S ribosomal protein S12 OS=Physcomitrella patens subsp. patens
Align length 41
Score (bit) 83.6
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944557|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H06, 5'
         (422 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TAH6|A9TAH6_PHYPA 40S ribosomal protein S12 OS=Physcomitrel...    84   5e-15
tr|A9U0N3|A9U0N3_PHYPA 40S ribosomal protein S12 OS=Physcomitrel...    82   1e-14
tr|A9NQ79|A9NQ79_PICSI 40S ribosomal protein S12 OS=Picea sitche...    82   1e-14
tr|B6SKZ9|B6SKZ9_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    82   2e-14
tr|B6SHY8|B6SHY8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    82   2e-14
tr|B6SGF1|B6SGF1_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    82   2e-14
tr|B4FGC8|B4FGC8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    82   2e-14
tr|A9RT00|A9RT00_PHYPA 40S ribosomal protein S12 (Fragment) OS=P...    81   2e-14
tr|A9NPA9|A9NPA9_PICSI 40S ribosomal protein S12 OS=Picea sitche...    81   3e-14
tr|Q6ZLP8|Q6ZLP8_ORYSJ 40S ribosomal protein S12 OS=Oryza sativa...    80   4e-14
tr|B8B7B6|B8B7B6_ORYSI Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|B6TCB8|B6TCB8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    80   4e-14
tr|B8LNN0|B8LNN0_PICSI Putative uncharacterized protein OS=Picea...    80   5e-14
tr|Q8H2J8|Q8H2J8_ORYSJ 40S ribosomal protein S12 OS=Oryza sativa...    79   1e-13
tr|A2YJM2|A2YJM2_ORYSI 40S ribosomal protein S12 OS=Oryza sativa...    79   1e-13
tr|A7PFT0|A7PFT0_VITVI 40S ribosomal protein S12 OS=Vitis vinife...    77   4e-13
tr|A9P9K3|A9P9K3_POPTR 40S ribosomal protein S12 OS=Populus tric...    74   4e-12
tr|A9P9I0|A9P9I0_POPTR 40S ribosomal protein S12 OS=Populus tric...    74   4e-12
tr|A9QW59|A9QW59_PANQU Putative uncharacterized protein (Fragmen...    74   5e-12
tr|A9PJY6|A9PJY6_POPJC 40S ribosomal protein S12 OS=Populus jack...    73   6e-12
tr|A9PDC2|A9PDC2_POPTR 40S ribosomal protein S12 OS=Populus tric...    73   6e-12
tr|Q4PEZ5|Q4PEZ5_USTMA 40S ribosomal protein S12 OS=Ustilago may...    72   1e-11
tr|A8UFV4|A8UFV4_9ANNE 40S ribosomal protein S12 OS=Eurythoe com...    72   2e-11
tr|Q86PL3|Q86PL3_PERAI 40S ribosomal protein S12 OS=Perinereis a...    71   3e-11
tr|A8J9T0|A8J9T0_CHLRE 40S ribosomal protein S12 OS=Chlamydomona...    70   7e-11
tr|Q8T9N6|Q8T9N6_BRABE 40S ribosomal protein S12 OS=Branchiostom...    70   7e-11
tr|Q8ISP4|Q8ISP4_BRABE 40S ribosomal protein S12 OS=Branchiostom...    70   7e-11
tr|B6PNC4|B6PNC4_BRAFL Putative uncharacterized protein OS=Branc...    70   7e-11
tr|Q962R7|Q962R7_SPOFR 40S ribosomal protein S12 OS=Spodoptera f...    69   9e-11
tr|Q6F464|Q6F464_PLUXY 40S ribosomal protein S12 OS=Plutella xyl...    69   9e-11

>tr|A9TAH6|A9TAH6_PHYPA 40S ribosomal protein S12 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_142612 PE=3 SV=1
          Length = 139

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 38/41 (92%), Positives = 41/41 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSQ 214
           LCKIDSEGKARKVVGCSCVVVKDYGEETEGLN+V+EY+KSQ
Sbjct: 99  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNIVREYVKSQ 139


>tr|A9U0N3|A9U0N3_PHYPA 40S ribosomal protein S12 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_109134 PE=3 SV=1
          Length = 143

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 38/41 (92%), Positives = 40/41 (97%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSQ 214
           LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVV+EY K+Q
Sbjct: 103 LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVREYFKNQ 143


>tr|A9NQ79|A9NQ79_PICSI 40S ribosomal protein S12 OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNV+QEY+K+
Sbjct: 101 LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVIQEYVKT 140


>tr|B6SKZ9|B6SKZ9_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KS
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKS 139


>tr|B6SHY8|B6SHY8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KS
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKS 139


>tr|B6SGF1|B6SGF1_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KS
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKS 139


>tr|B4FGC8|B4FGC8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KS
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKS 139


>tr|A9RT00|A9RT00_PHYPA 40S ribosomal protein S12 (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_49325 PE=3 SV=1
          Length = 132

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVV+EY+K+
Sbjct: 93  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVREYIKN 132


>tr|A9NPA9|A9NPA9_PICSI 40S ribosomal protein S12 OS=Picea
           sitchensis PE=3 SV=1
          Length = 120

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/40 (90%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSC+VVKDYGEETEGLNV+QEY+K+
Sbjct: 80  LCKIDSEGKARKVVGCSCLVVKDYGEETEGLNVIQEYVKT 119


>tr|Q6ZLP8|Q6ZLP8_ORYSJ 40S ribosomal protein S12 OS=Oryza sativa
           subsp. japonica GN=OJ1027_G06.23 PE=2 SV=1
          Length = 138

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 36/40 (90%), Positives = 40/40 (100%)
 Frame = +2

Query: 92  LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 211
           LCKIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQ+Y+KS
Sbjct: 98  LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYVKS 137