DK944601
Clone id YMU02A01NGRL0006_J13
Library
Length 327
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GCATTGTATACTTGCTCTTATTTTATTCGCACTTTTATGAATATCATTAAACATACATGA
TGACGCCTCTTCATGCTGTGTGTCTCGTCAGCCCTCAAAATGAAGGGACTGGAGTGGATG
TAGATAAGCCTACCCTGATGTACACCACTCTGGATTTGTTAACAACTATAAAGGCACCAC
AATCTAAGATGGACGTAGCTGTCAGTCTTTTGCTTCTACAATTGTTTTCTATTTCTGTTT
TGGATCTCAGGCCACAGTGTATATTGAAACTGGCAATGTTATTTCCTAGTGAATCCTGGT
CATGACTAGTGCTTGGATTCTCACCTG
■■Homology search results ■■ -
sp_hit_id Q6IRN0
Definition sp|Q6IRN0|S11IP_XENLA Serine/threonine kinase 11-interacting protein OS=Xenopus laevis
Align length 56
Score (bit) 29.6
E-value 4.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944601|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J13, 5'
(292 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6IRN0|S11IP_XENLA Serine/threonine kinase 11-interacting pro... 30 4.8
sp|A8YTH9|MUTS_LACH4 DNA mismatch repair protein mutS OS=Lactoba... 29 6.3

>sp|Q6IRN0|S11IP_XENLA Serine/threonine kinase 11-interacting
protein OS=Xenopus laevis GN=stk11ip PE=2 SV=1
Length = 1137

Score = 29.6 bits (65), Expect = 4.8
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1

Query: 271 SFNIHCGLRSKTEIENNCRSKRLTATSILDCGAFIVVNKSRVVYIRVGLSTSTPVP 104
S+N L S E+ N+ + L+ I +CG+++ V S + Y+ +G + T VP
Sbjct: 174 SYNTLKDLDSSLELLNSLKISDLSHNQITECGSYLKV-LSELQYLNLGYNYLTAVP 228


>sp|A8YTH9|MUTS_LACH4 DNA mismatch repair protein mutS
OS=Lactobacillus helveticus (strain DPC 4571) GN=mutS
PE=3 SV=1
Length = 858

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1

Query: 289 LGNNIASFNIHCGLRSKTEIENNCRSKRLTATSILD 182
LGN +A+ +++CG + E N CR T + +D
Sbjct: 529 LGNQLAALDVYCGFATVAEQNNYCRPSFHTDSQDID 564


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944601|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J13, 5'
(292 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******